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namefix update javadoc
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@lacan
lacan committed Nov 8, 2022
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4 changes: 2 additions & 2 deletions docs/index-all.html
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Expand Up @@ -389,6 +389,8 @@ <h2 class="title">M</h2>
</dd>
<dt><span class="memberNameLink"><a href="qupath/ext/biop/cellpose/Cellpose2D.html#minTrainMasks">minTrainMasks</a></span> - Variable in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/Cellpose2D.html" title="class in qupath.ext.biop.cellpose">Cellpose2D</a></dt>
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="qupath/ext/biop/cellpose/CellposeBuilder.html#minTrainMasks(java.lang.Integer)">minTrainMasks(Integer)</a></span> - Method in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></dt>
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="qupath/ext/biop/cellpose/Cellpose2D.html#model">model</a></span> - Variable in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/Cellpose2D.html" title="class in qupath.ext.biop.cellpose">Cellpose2D</a></dt>
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="qupath/ext/biop/cellpose/Cellpose2D.html#modelDirectory">modelDirectory</a></span> - Variable in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/Cellpose2D.html" title="class in qupath.ext.biop.cellpose">Cellpose2D</a></dt>
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<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="qupath/ext/biop/cellpose/CellposeSetup.html#setEnvironmentType(qupath.ext.biop.cmd.VirtualEnvironmentRunner.EnvType)">setEnvironmentType(VirtualEnvironmentRunner.EnvType)</a></span> - Method in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/CellposeSetup.html" title="class in qupath.ext.biop.cellpose">CellposeSetup</a></dt>
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="qupath/ext/biop/cellpose/CellposeBuilder.html#setMinTrainMasks(java.lang.Integer)">setMinTrainMasks(Integer)</a></span> - Method in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></dt>
<dd>&nbsp;</dd>
<dt><span class="memberNameLink"><a href="qupath/ext/biop/cellpose/CellposeBuilder.html#setOverlap(int)">setOverlap(int)</a></span> - Method in class qupath.ext.biop.cellpose.<a href="qupath/ext/biop/cellpose/CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></dt>
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<div class="block">Set the overlap (in pixels) between tiles.</div>
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2 changes: 1 addition & 1 deletion docs/member-search-index.js
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2 changes: 1 addition & 1 deletion docs/overview-summary.html
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<!-- NewPage -->
<html lang="en">
<head>
<!-- Generated by javadoc (11.0.12) on Tue Nov 08 10:04:19 CET 2022 -->
<!-- Generated by javadoc (11.0.12) on Tue Nov 08 10:12:14 CET 2022 -->
<title>qupath-extension-cellpose 0.5.1 API</title>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<script type="text/javascript">window.location.replace('index.html')</script>
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24 changes: 12 additions & 12 deletions docs/qupath/ext/biop/cellpose/CellposeBuilder.html
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Expand Up @@ -353,45 +353,45 @@ <h3>Method Summary</h3>
</tr>
<tr id="i28" class="altColor">
<td class="colFirst"><code><a href="CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></code></td>
<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#minTrainMasks(java.lang.Integer)">minTrainMasks</a></span>&#8203;(java.lang.Integer&nbsp;n)</code></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr id="i29" class="rowColor">
<td class="colFirst"><code><a href="CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></code></td>
<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#modelDirectory(java.io.File)">modelDirectory</a></span>&#8203;(java.io.File&nbsp;modelDir)</code></th>
<td class="colLast">
<div class="block">Define the directory where the newly trained model should be saved</div>
</td>
</tr>
<tr id="i29" class="rowColor">
<tr id="i30" class="altColor">
<td class="colFirst"><code><a href="CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></code></td>
<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#normalizePercentiles(double,double)">normalizePercentiles</a></span>&#8203;(double&nbsp;min,
double&nbsp;max)</code></th>
<td class="colLast">
<div class="block">Apply percentile normalization to the input image channels.</div>
</td>
</tr>
<tr id="i30" class="altColor">
<tr id="i31" class="rowColor">
<td class="colFirst"><code><a href="CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></code></td>
<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#pixelSize(double)">pixelSize</a></span>&#8203;(double&nbsp;pixelSize)</code></th>
<td class="colLast">
<div class="block">Resolution at which the cell detection should be run.</div>
</td>
</tr>
<tr id="i31" class="rowColor">
<tr id="i32" class="altColor">
<td class="colFirst"><code><a href="CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></code></td>
<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#preprocess(qupath.opencv.ops.ImageOp...)">preprocess</a></span>&#8203;(qupath.opencv.ops.ImageOp...&nbsp;ops)</code></th>
<td class="colLast">
<div class="block">Add preprocessing operations, if required.</div>
</td>
</tr>
<tr id="i32" class="altColor">
<tr id="i33" class="rowColor">
<td class="colFirst"><code><a href="CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></code></td>
<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#saveBuilder(java.lang.String)">saveBuilder</a></span>&#8203;(java.lang.String&nbsp;name)</code></th>
<td class="colLast">
<div class="block">Save this builder as a JSON file in order to be able to reuse it in place</div>
</td>
</tr>
<tr id="i33" class="rowColor">
<td class="colFirst"><code><a href="CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></code></td>
<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#setMinTrainMasks(java.lang.Integer)">setMinTrainMasks</a></span>&#8203;(java.lang.Integer&nbsp;n)</code></th>
<td class="colLast">&nbsp;</td>
</tr>
<tr id="i34" class="altColor">
<td class="colFirst"><code><a href="CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a></code></td>
<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#setOverlap(int)">setOverlap</a></span>&#8203;(int&nbsp;overlap)</code></th>
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</dl>
</li>
</ul>
<a id="setMinTrainMasks(java.lang.Integer)">
<a id="minTrainMasks(java.lang.Integer)">
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<h4>setMinTrainMasks</h4>
<pre class="methodSignature">public&nbsp;<a href="CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a>&nbsp;setMinTrainMasks&#8203;(java.lang.Integer&nbsp;n)</pre>
<h4>minTrainMasks</h4>
<pre class="methodSignature">public&nbsp;<a href="CellposeBuilder.html" title="class in qupath.ext.biop.cellpose">CellposeBuilder</a>&nbsp;minTrainMasks&#8203;(java.lang.Integer&nbsp;n)</pre>
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