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Merge changes from main into hotfix #347

Merged
merged 20 commits into from
Oct 1, 2024
Merged

Merge changes from main into hotfix #347

merged 20 commits into from
Oct 1, 2024

Commits on Sep 12, 2024

  1. Merge changes from main into hotfix (#195) (#337) 

    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Sara Monzón <[email protected]>
Co-authored-by: Pablo Mata <[email protected]>
Co-authored-by: Víctor López <[email protected]>
    @github-actions @saramonzon
    @Shettland @victor5lm
    4 people authored Sep 12, 2024
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  2. fixed path database and update emmtyper params

    @Daniel-VM
    Daniel-VM committed Sep 12, 2024
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  3. update changelog #339

    @Daniel-VM
    Daniel-VM committed Sep 12, 2024
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Commits on Sep 19, 2024

  1. update sarek version in exomeeb (#341) 

    * update sarek version in exomeeb

* Updated sarek version (v3.4.4) in ExomeEB-ExomeTrio-WGSTrio templates

* Current version Nextflow
    @OPSergio
    OPSergio authored Sep 19, 2024
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  2. Created code to generate amended consensus without ambiguities but ma… 

    …sked
    @svarona
    svarona committed Sep 19, 2024
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  3. Updated changelog

    @svarona
    svarona committed Sep 19, 2024
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  4. Fixd changelog

    @svarona
    svarona committed Sep 19, 2024
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  5. Created postprocessing script for amended files

    @svarona
    svarona committed Sep 19, 2024
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  6. included postprocessing script in lablog

    @svarona
    svarona committed Sep 19, 2024
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  7. Shortened code to look better

    @svarona
    svarona committed Sep 19, 2024
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Commits on Oct 1, 2024

  1. Updated the 03-annotation/lablogs in exomeeb, exometrio and wgstrio s… 

    …ervices to have all the necessary -bind routes
    @victor5lm
    victor5lm committed Oct 1, 2024
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  2. Updated bioinfo_doc.py to allow more options when creating the delive… 

    …ry email
    @victor5lm
    victor5lm committed Oct 1, 2024
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  3. Updated excel_generator.py to be more informative

    @victor5lm
    victor5lm committed Oct 1, 2024
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  4. Updated sftp_user.json

    @victor5lm
    victor5lm committed Oct 1, 2024
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  5. Updated 03-MTBSeq/lablog to handle the first sample name appropriately

    @victor5lm
    victor5lm committed Oct 1, 2024
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  6. Fixed linting mistakes

    @victor5lm
    victor5lm committed Oct 1, 2024
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  7. Updated CHANGELOG.md

    @victor5lm
    victor5lm committed Oct 1, 2024
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  8. Updated setup.py

    @victor5lm
    victor5lm committed Oct 1, 2024
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  9. Updated __main__.py

    @victor5lm
    victor5lm committed Oct 1, 2024
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  10. Merge pull request #345 from BU-ISCIII/develop 

    Develop merge for 2.2.1 release
    @victor5lm
    victor5lm authored Oct 1, 2024
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