Merge pull request #43 from BackofenLab/input

added 3 to python and setup.py

bin/cherri

@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python3
 import pandas as pd
 import argparse
 import os
@@ -8,11 +8,11 @@ import sys
 import rrieval.lib as rl
 from scipy.sparse import csr_matrix, vstack, hstack, load_npz, save_npz
 from ubergauss.tools import loadfile, dumpfile
-import subprocess
+# import subprocess
 
 
 
-__version__ = "0.3"
+__version__ = "0.4"
 
 """
 

bin/find_occupied_regions.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python3
 import pandas as pd
 from collections import defaultdict
 import argparse

bin/find_trusted_RRI.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python3
 import pandas as pd
 import math
 import numpy as np

bin/generate_pos_neg_with_context.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python3
 import pandas as pd
 import math
 import numpy as np

bin/get_features.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python3
 import pandas as pd
 import math
 import matplotlib as mpl

rrieval/lib.py

@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python3
 
 #general imports
 

setup.py

@@ -1,4 +1,4 @@
-# -*- coding: utf-8 -*-
+#!/usr/bin/env python3
 
 from setuptools import setup, find_packages
 
@@ -11,21 +11,19 @@
 
 setup(
     name='cherri',
-    version='0.3',
+    version='0.4',
     description='Cherri is a tool for classification of RNA-RNA interactions.',
     long_description=readme,
     long_description_content_type='text/markdown',
     author='Teresa Mueller',
     author_email='[email protected]',
-    url='https://github.com/teresa-m/Cherri',
+    url='https://github.com/BackofenLab/Cherri',
     license=license,
     scripts=['bin/cherri', 'bin/find_occupied_regions.py',
              'bin/find_trusted_RRI.py', 'bin/generate_pos_neg_with_context.py',
              'bin/get_features.py'],
     packages=find_packages(exclude=('tests', 'docs')),
-    package_data={'': ['IntaRNA_param/*']},
+    package_data={'rrieval': ['IntaRNA_param/*']},
     include_package_data=True,
-    #packages=['rrieval'],
-    # package_data={'rrieval': ['lib.py','IntaRNA_param/IntaRNA_param.txt']},
-    zip_safe=False
+    zip_safe=False,
 )