Skip to content

Commit

Permalink
Reimport workflows
Browse files Browse the repository at this point in the history
  • Loading branch information
@mmiladi
mmiladi committed Jan 22, 2017
1 parent ec3b8d3 commit c48de73
Show file tree
Hide file tree
Showing 2 changed files with 133 additions and 106 deletions.
95 changes: 52 additions & 43 deletions workflows/GraphClust_one.ga
View file
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@
"a_galaxy_workflow": "true",
"annotation": "",
"format-version": "0.1",
"name": "GraphClust-1-round",
"name": "GraphClust-1-round (imported from API)",
"steps": {
"0": {
"annotation": "",
Expand All @@ -19,8 +19,8 @@
"name": "Input dataset",
"outputs": [],
"position": {
"left": 200,
"top": 200
"left": 199.96875,
"top": 204
},
"tool_errors": null,
"tool_id": null,
Expand Down Expand Up @@ -77,8 +77,8 @@
}
],
"position": {
"left": 191.984375,
"top": 290.984375
"left": 438.890625,
"top": 329.90625
},
"post_job_actions": {
"HideDatasetActionFASTA": {
Expand Down Expand Up @@ -110,7 +110,7 @@
"tool_errors": null,
"tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_preprocessing/preproc/0.1",
"tool_shed_repository": {
"changeset_revision": "3eb088816194",
"changeset_revision": "cf2673f7eb44",
"name": "graphclust_preprocessing",
"owner": "rnateam",
"tool_shed": "toolshed.g2.bx.psu.edu"
Expand Down Expand Up @@ -146,8 +146,8 @@
}
],
"position": {
"left": 389.96875,
"top": 155
"left": 676.921875,
"top": 199.96875
},
"post_job_actions": {
"HideDatasetActiongspan.zip": {
Expand All @@ -159,7 +159,7 @@
"tool_errors": null,
"tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_fasta_to_gspan/gspan/0.1",
"tool_shed_repository": {
"changeset_revision": "b6e6830ff06b",
"changeset_revision": "358c52752305",
"name": "graphclust_fasta_to_gspan",
"owner": "rnateam",
"tool_shed": "toolshed.g2.bx.psu.edu"
Expand Down Expand Up @@ -203,8 +203,8 @@
}
],
"position": {
"left": 407.984375,
"top": 262.984375
"left": 932.90625,
"top": 223.921875
},
"post_job_actions": {
"HideDatasetActiondata_svector": {
Expand All @@ -216,7 +216,7 @@
"tool_errors": null,
"tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/nspdk_sparse/9.2",
"tool_shed_repository": {
"changeset_revision": "165fe96228be",
"changeset_revision": "90a4a2e7d876",
"name": "graphclust_nspdk",
"owner": "rnateam",
"tool_shed": "toolshed.g2.bx.psu.edu"
Expand Down Expand Up @@ -288,8 +288,8 @@
}
],
"position": {
"left": 420.984375,
"top": 440.984375
"left": 1149.890625,
"top": 279.9375
},
"post_job_actions": {
"HideDatasetActionblack_list": {
Expand Down Expand Up @@ -326,7 +326,7 @@
"tool_errors": null,
"tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_nspdk/NSPDK_candidateClust/9.2",
"tool_shed_repository": {
"changeset_revision": "165fe96228be",
"changeset_revision": "90a4a2e7d876",
"name": "graphclust_nspdk",
"owner": "rnateam",
"tool_shed": "toolshed.g2.bx.psu.edu"
Expand Down Expand Up @@ -402,8 +402,8 @@
}
],
"position": {
"left": 660.984375,
"top": 338.984375
"left": 1512.890625,
"top": 390.9375
},
"post_job_actions": {
"HideDatasetActioncenters": {
Expand Down Expand Up @@ -435,7 +435,7 @@
"tool_errors": null,
"tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_prepocessing_for_mlocarna/preMloc/0.1.0",
"tool_shed_repository": {
"changeset_revision": "8ad3e79255c1",
"changeset_revision": "8d3222b4b96b",
"name": "graphclust_prepocessing_for_mlocarna",
"owner": "rnateam",
"tool_shed": "toolshed.g2.bx.psu.edu"
Expand Down Expand Up @@ -495,8 +495,8 @@
}
],
"position": {
"left": 847.46875,
"top": 405.984375
"left": 1788.375,
"top": 507.9375
},
"post_job_actions": {
"HideDatasetActionmodel_tree_stk": {
Expand All @@ -508,12 +508,12 @@
"tool_errors": null,
"tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_mlocarna/locarna_best_subtree/0.1.0",
"tool_shed_repository": {
"changeset_revision": "15bd4fb05e5c",
"changeset_revision": "c6c4a7adb099",
"name": "graphclust_mlocarna",
"owner": "rnateam",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"tau\": \"\\\"50\\\"\", \"max_diff_am\": \"\\\"50\\\"\", \"center_fa_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"tree_matrix\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"p\": \"\\\"0.001\\\"\", \"data_map\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"max_diff\": \"\\\"100\\\"\", \"tree_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"plfold_minlen\": \"\\\"210\\\"\"}",
"tool_state": "{\"tau\": \"\\\"50\\\"\", \"max_diff_am\": \"\\\"50\\\"\", \"center_fa_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"__page__\": 0, \"__rerun_remap_job_id__\": null, \"tree_matrix\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"p\": \"\\\"0.001\\\"\", \"data_map\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"param_type\": \"{\\\"tau\\\": \\\"50\\\", \\\"max_diff_am\\\": \\\"50\\\", \\\"struct_weight\\\": \\\"180\\\", \\\"p\\\": \\\"0.001\\\", \\\"plfold_winsize\\\": \\\"300\\\", \\\"alifold_consensus_dp\\\": \\\"true\\\", \\\"param_type_selector\\\": \\\"gclust\\\", \\\"indel\\\": \\\"-200\\\", \\\"__current_case__\\\": 0, \\\"max_diff\\\": \\\"100\\\", \\\"indel_opening\\\": \\\"-400\\\", \\\"plfold_minlen\\\": \\\"210\\\", \\\"plfold_span\\\": \\\"150\\\"}\", \"max_diff\": \"\\\"100\\\"\", \"tree_file\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"plfold_minlen\": \"\\\"210\\\"\"}",
"tool_version": "0.1.0",
"type": "tool",
"uuid": "8febdf67-f1ae-42c0-89e4-baabaf4e2e1b",
Expand Down Expand Up @@ -552,8 +552,8 @@
}
],
"position": {
"left": 837.984375,
"top": 642.984375
"left": 2048.90625,
"top": 855.9375
},
"post_job_actions": {
"HideDatasetActionmodel_cmfinder_stk": {
Expand All @@ -565,7 +565,7 @@
"tool_errors": null,
"tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_cmfinder/cmFinder/0.1.0",
"tool_shed_repository": {
"changeset_revision": "78772eedd780",
"changeset_revision": "a4b009876214",
"name": "graphclust_cmfinder",
"owner": "rnateam",
"tool_shed": "toolshed.g2.bx.psu.edu"
Expand Down Expand Up @@ -609,8 +609,8 @@
}
],
"position": {
"left": 1100,
"top": 655.984375
"left": 2360.953125,
"top": 927.9375
},
"post_job_actions": {
"HideDatasetActioncmfile_outfile": {
Expand Down Expand Up @@ -680,8 +680,8 @@
}
],
"position": {
"left": 833.484375,
"top": 822.984375
"left": 2732.390625,
"top": 952.921875
},
"post_job_actions": {
"HideDatasetActionmultiple_alignment_output": {
Expand Down Expand Up @@ -783,11 +783,15 @@
{
"name": "evaluation",
"type": "txt"
},
{
"name": "RESULTS_zip",
"type": "zip"
}
],
"position": {
"left": 1172.984375,
"top": 937.984375
"left": 3097.890625,
"top": 999.921875
},
"post_job_actions": {
"HideDatasetActionfinal_soft": {
Expand All @@ -814,30 +818,30 @@
"tool_errors": null,
"tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/graphclust_postprocessing/glob_report/0.1",
"tool_shed_repository": {
"changeset_revision": "4a9754d476fe",
"changeset_revision": "4310ac018d05",
"name": "graphclust_postprocessing",
"owner": "rnateam",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"__page__\": 0, \"model_tree_files\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"cm_max_eval\": \"\\\"0.001\\\"\", \"min_cluster_size\": \"\\\"3\\\"\", \"__rerun_remap_job_id__\": null, \"merge_cluster_ol\": \"\\\"0.66\\\"\", \"iteration_num\": \"{\\\"iteration_num_selector\\\": \\\"false\\\", \\\"__current_case__\\\": 1}\", \"cm_min_bitscore\": \"\\\"20\\\"\", \"cmsearch_results\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"results_top_num\": \"\\\"5\\\"\", \"merge_overlap\": \"\\\"0.51\\\"\", \"cm_bitscore_sig\": \"\\\"1\\\"\", \"FASTA\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"cut_type\": \"\\\"true\\\"\", \"cdhit\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"partition_type\": \"\\\"true\\\"\"}",
"tool_state": "{\"__page__\": 0, \"model_tree_files\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"cm_max_eval\": \"\\\"0.001\\\"\", \"min_cluster_size\": \"\\\"3\\\"\", \"advanced_opts\": \"{\\\"__current_case__\\\": 0, \\\"advanced_opts_selector\\\": \\\"hide\\\"}\", \"merge_cluster_ol\": \"\\\"0.66\\\"\", \"iteration_num\": \"{\\\"iteration_num_selector\\\": \\\"false\\\", \\\"__current_case__\\\": 1}\", \"cm_min_bitscore\": \"\\\"20\\\"\", \"cmsearch_results\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"results_top_num\": \"\\\"5\\\"\", \"merge_overlap\": \"\\\"0.51\\\"\", \"cm_bitscore_sig\": \"\\\"1\\\"\", \"__rerun_remap_job_id__\": null, \"FASTA\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"cut_type\": \"\\\"true\\\"\", \"cdhit\": \"{\\\"__class__\\\": \\\"RuntimeValue\\\"}\", \"partition_type\": \"\\\"true\\\"\"}",
"tool_version": "0.1",
"type": "tool",
"uuid": "2cf68268-36ab-4b5c-a0be-5bbe149970f4",
"workflow_outputs": [
{
"label": null,
"output_name": "topSecondaryStruct",
"uuid": "e73c4935-1b80-4c65-aa9a-43e8a8159d23"
"output_name": "topDot",
"uuid": "14959ce4-9e2c-4174-8952-ed1dc12bd395"
},
{
"label": null,
"output_name": "evaluation",
"uuid": "51dc83c0-5c56-48e8-91ee-e4b3fac56602"
"output_name": "final_stats",
"uuid": "38bc3ed1-1dba-4665-b2bc-88698f5875aa"
},
{
"label": null,
"output_name": "topDot",
"uuid": "14959ce4-9e2c-4174-8952-ed1dc12bd395"
"output_name": "topSecondaryStruct",
"uuid": "e73c4935-1b80-4c65-aa9a-43e8a8159d23"
},
{
"label": null,
Expand All @@ -846,11 +850,16 @@
},
{
"label": null,
"output_name": "final_stats",
"uuid": "38bc3ed1-1dba-4665-b2bc-88698f5875aa"
"output_name": "evaluation",
"uuid": "51dc83c0-5c56-48e8-91ee-e4b3fac56602"
},
{
"label": null,
"output_name": "RESULTS_zip",
"uuid": "9d09a53f-abb6-42e5-af3e-169cd92d922a"
}
]
}
},
"uuid": "afdc2ffd-c454-42bb-9e5c-0295e558cfd4"
}
"uuid": "4c871c34-4d82-40b0-ab6c-e22cdf62330c"
}
Loading

0 comments on commit c48de73

Please sign in to comment.