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DOC add descriptions for new manual curation files
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Vedanth-Ramji committed Jun 7, 2024
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4 changes: 2 additions & 2 deletions argnorm/data/manual_curation/argannot_curation.tsv
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Original ID ARO Gene Name in CARD
(Phe)cpt_strepv:U09991:AAB36569:1412-1948:537 3000249 chloramphenicol phosphotransferase
Original ID ARO Gene Name in CARD Description
(Phe)cpt_strepv:U09991:AAB36569:1412-1948:537 3000249 chloramphenicol phosphotransferase Parent ARO mapping
176 changes: 88 additions & 88 deletions argnorm/data/manual_curation/megares_curation.tsv
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Original ID ARO
MEG_8443|Drugs|Pleuromutilin|Pleuromutilin-resistant_23S_rRNA_mutation|P23S|RequiresSNPConfirmation 3005083
MEG_4060|Metals|Multi-metal_resistance|Multi-metal_resistance_protein|MREA
MEG_2865|Drugs|Phenicol|Chloramphenicol_hydrolase|ESTD 3000387
MEG_1732|Drugs|Lipopeptides|Daptomycin-resistant_mutant|CLS|RequiresSNPConfirmation 3003092
MEG_2933|Drugs|Mycobacterium_tuberculosis-specific_Drug|Para-aminosalicylic_acid_resistant_mutant|FOLC|RequiresSNPConfirmation 3004157
MEG_8700|Multi-compound|Biocide_and_metal_resistance|Biocide_and_metal_ABC_efflux_pumps|SITABCD
MEG_8447|Drugs|Fluoroquinolones|Fluoroquinolone-resistant_DNA_topoisomerases|PARC|RequiresSNPConfirmation 3000274
MEG_6241|Drugs|betalactams|Class_A_betalactamases|SHV 3001059
MEG_7974|Drugs|betalactams|Class_C_betalactamase_regulator|AMPCR|RequiresSNPConfirmation 3000076
MEG_3987|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004546
MEG_6055|Drugs|Mycobacterium_tuberculosis-specific_Drug|Para-aminosalicylic_acid_resistant_mutant|RIBD|RequiresSNPConfirmation 3004184
MEG_6144|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|RPSL|RequiresSNPConfirmation 3003395
MEG_3745|Multi-compound|Drug_and_biocide_and_metal_resistance|Drug_and_biocide_and_metal_RND_efflux_pumps|MDTA
MEG_8140|Drugs|Aminoglycosides|Gentamicin-resistant_ATP-binding_protein|GRDA 3003949
MEG_5285|Drugs|betalactams|Class_A_betalactamases|OXY 3002390
MEG_8643|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_MFS_efflux_pumps|QACAB
MEG_8644|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_MFS_efflux_pumps|QACAB
MEG_3071|Drugs|Fusidic_acid|Fusidic_acid-resistant_mutation|FUSE|RequiresSNPConfirmation 3003737
MEG_3986|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004174
MEG_2062|Metals|Copper_resistance|Copper_resistance_protein|COPL
MEG_8646|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACD
MEG_6137|Drugs|Lipopeptides|Daptomycin-resistant_beta-subunit_of_RNA_polymerase_RpoB|RPOBL|RequiresSNPConfirmation 3003287
MEG_6136|Drugs|Lipopeptides|Daptomycin-resistant_beta-subunit_of_RNA_polymerase_RpoB|RPOBL|RequiresSNPConfirmation 3003285
MEG_1180|Drugs|Multi-drug_resistance|Multi-drug_RND_efflux_regulator|ASMA
MEG_1179|Drugs|Multi-drug_resistance|Multi-drug_RND_efflux_regulator|ASMA
MEG_8642|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_MFS_efflux_pumps|QACAB
MEG_497|Drugs|betalactams|Class_C_betalactamases|ACT 3000072
MEG_8087|Biocides|Aldehyde_resistance|Aldehyde_degradation|FORMA
MEG_2114|Drugs|Phenicol|Chloramphenicol_phosphotransferase|CPT 3000249
MEG_8651|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACL
MEG_5337|Drugs|Fluoroquinolones|Fluoroquinolone-resistant_DNA_topoisomerases|PARC|RequiresSNPConfirmation 3000274
MEG_7344|Drugs|Glycopeptides|VanA-type_resistance_protein|VANA 3000010
MEG_5780|Drugs|Lipopeptides|Daptomycin-resistant_mutant|PGSA|RequiresSNPConfirmation 3003323
MEG_8647|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACF
MEG_4033|Drugs|MLS|Macrolide_phosphotransferases|MPHB 3000318
MEG_8645|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACC
MEG_3980|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004165
MEG_1|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|A16S|RequiresSNPConfirmation 3003485
MEG_6963|Drugs|Tetracyclines|Tetracycline-resistant_16S_ribosomal_subunit_protein|TET16S|RequiresSNPConfirmation 3003510
MEG_3588|Drugs|Lipopeptides|Daptomycin-resistant_mutant|LIAFSR|RequiresSNPConfirmation 3003077
MEG_5781|Drugs|Phenicol|Phenicol-resistant_23S_rRNA_mutation|PH23S|RequiresSNPConfirmation 3004180
MEG_3857|Metals|Mercury_resistance|Mercury_resistance_protein|MERC
MEG_3982|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004163
MEG_2430|Drugs|betalactams|Class_A_betalactamases|CTX 3000016
MEG_8648|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACG
MEG_8650|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACH
MEG_3445|Drugs|Mycobacterium_tuberculosis-specific_Drug|Isoniazid-resistant_mutant|KASA|RequiresSNPConfirmation 3003463
MEG_7259|Drugs|Aminoglycosides|Aminoglycoside-resistant_arabinosyltransferase|TLYA|RequiresSNPConfirmation 3003465
MEG_1983|Drugs|betalactams|Class_C_betalactamases|CMY 3002095
MEG_7075|Drugs|Tetracyclines|Tetracycline_resistance_MFS_efflux_pumps|TETE 3000173
MEG_3983|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004177
MEG_6147|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|RRSH|RequiresSNPConfirmation 3003372
MEG_8254|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004836
MEG_6493|Drugs|betalactams|Class_A_betalactamases|SHV 3001139
MEG_3993|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004168
MEG_1319|Drugs|betalactams|Class_A_betalactamases|BLASME 3002379
MEG_5208|Drugs|betalactams|Class_D_betalactamases|OXA 3001410
MEG_2414|Drugs|betalactams|Class_A_betalactamases|CTX 3001904
MEG_2421|Drugs|betalactams|Class_A_betalactamases|CTX 3001927
MEG_3976|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004134
MEG_6875|Drugs|betalactams|Class_A_betalactamases|TEM 3000884
MEG_3989|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004179
MEG_6964|Drugs|Tetracyclines|Tetracycline-resistant_16S_ribosomal_subunit_protein|TET16S|RequiresSNPConfirmation 3003499
MEG_2|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|A16S|RequiresSNPConfirmation 3003512
MEG_3975|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004169
MEG_2423|Drugs|betalactams|Class_A_betalactamases|CTX 3001932
MEG_8263|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_RND_efflux_pumps|MTRC|RequiresSNPConfirmation
MEG_985|Drugs|Aminoglycosides|Aminoglycoside_O-nucleotidyltransferases|ANT4-PRIME 3000229
MEG_3979|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004176
MEG_3990|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004171
MEG_2425|Drugs|betalactams|Class_A_betalactamases|CTX 3002002
MEG_3129|Drugs|betalactams|Class_A_betalactamases|GES 3002337
MEG_3131|Drugs|betalactams|Class_A_betalactamases|GES 3002350
MEG_6146|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|RRSC|RequiresSNPConfirmation 3003333
MEG_3393|Drugs|betalactams|Class_B_betalactamases|IMP 3002223
MEG_3991|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004133
MEG_8679|Drugs|Oxazolidinone|Oxazolidinone-resistant_23S_rRNA_mutation|RRL|RequiresSNPConfirmation 3004937
MEG_2427|Drugs|betalactams|Class_A_betalactamases|CTX 3001982
MEG_1490|Drugs|Cationic_antimicrobial_peptides|Cationic_peptide-resistant_16S_ribosomal_subunit_protein|CAP16S|RequiresSNPConfirmation 3003223
MEG_2393|Drugs|betalactams|Class_A_betalactamases|CTX 3001960
MEG_333|Drugs|Aminoglycosides|Aminoglycoside_N-acetyltransferases|AAC6-PRIME 3002578
MEG_3396|Drugs|betalactams|Class_B_betalactamases|IMP 3002205
MEG_1544|Drugs|betalactams|Class_A_betalactamases|CARB 3002243
MEG_2429|Drugs|betalactams|Class_A_betalactamases|CTX 3001943
MEG_5148|Drugs|betalactams|Class_D_betalactamases|OXA 3001555
MEG_7604|Drugs|Glycopeptides|VanD-type_accessory_protein|VANYD 3002957
MEG_8253|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004836
Original ID ARO Description
MEG_8443|Drugs|Pleuromutilin|Pleuromutilin-resistant_23S_rRNA_mutation|P23S|RequiresSNPConfirmation 3005083
MEG_4060|Metals|Multi-metal_resistance|Multi-metal_resistance_protein|MREA Metal resistance. No mapping
MEG_2865|Drugs|Phenicol|Chloramphenicol_hydrolase|ESTD 3000387
MEG_1732|Drugs|Lipopeptides|Daptomycin-resistant_mutant|CLS|RequiresSNPConfirmation 3003092
MEG_2933|Drugs|Mycobacterium_tuberculosis-specific_Drug|Para-aminosalicylic_acid_resistant_mutant|FOLC|RequiresSNPConfirmation 3004157
MEG_8700|Multi-compound|Biocide_and_metal_resistance|Biocide_and_metal_ABC_efflux_pumps|SITABCD Metal + Biocide resistance. No mapping
MEG_8447|Drugs|Fluoroquinolones|Fluoroquinolone-resistant_DNA_topoisomerases|PARC|RequiresSNPConfirmation 3000274
MEG_6241|Drugs|betalactams|Class_A_betalactamases|SHV 3001059
MEG_7974|Drugs|betalactams|Class_C_betalactamase_regulator|AMPCR|RequiresSNPConfirmation 3000076
MEG_3987|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004546
MEG_6055|Drugs|Mycobacterium_tuberculosis-specific_Drug|Para-aminosalicylic_acid_resistant_mutant|RIBD|RequiresSNPConfirmation 3004184
MEG_6144|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|RPSL|RequiresSNPConfirmation 3003395
MEG_3745|Multi-compound|Drug_and_biocide_and_metal_resistance|Drug_and_biocide_and_metal_RND_efflux_pumps|MDTA Metal + Biocide resistance. No mapping
MEG_8140|Drugs|Aminoglycosides|Gentamicin-resistant_ATP-binding_protein|GRDA 3003949
MEG_5285|Drugs|betalactams|Class_A_betalactamases|OXY 3002390
MEG_8643|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_MFS_efflux_pumps|QACAB Biocide resistance. No mapping
MEG_8644|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_MFS_efflux_pumps|QACAB Biocide resistance. No mapping
MEG_3071|Drugs|Fusidic_acid|Fusidic_acid-resistant_mutation|FUSE|RequiresSNPConfirmation 3003737
MEG_3986|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004174
MEG_2062|Metals|Copper_resistance|Copper_resistance_protein|COPL Metal resistance. No mapping
MEG_8646|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACD Biocide resistance. No mapping
MEG_6137|Drugs|Lipopeptides|Daptomycin-resistant_beta-subunit_of_RNA_polymerase_RpoB|RPOBL|RequiresSNPConfirmation 3003287
MEG_6136|Drugs|Lipopeptides|Daptomycin-resistant_beta-subunit_of_RNA_polymerase_RpoB|RPOBL|RequiresSNPConfirmation 3003285
MEG_1180|Drugs|Multi-drug_resistance|Multi-drug_RND_efflux_regulator|ASMA Muti-drug resistance. No mapping
MEG_1179|Drugs|Multi-drug_resistance|Multi-drug_RND_efflux_regulator|ASMA Muti-drug resistance. No mapping
MEG_8642|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_MFS_efflux_pumps|QACAB Biocide resistance. No mapping
MEG_497|Drugs|betalactams|Class_C_betalactamases|ACT 3000072
MEG_8087|Biocides|Aldehyde_resistance|Aldehyde_degradation|FORMA Biocide resistance. No mapping
MEG_2114|Drugs|Phenicol|Chloramphenicol_phosphotransferase|CPT 3000249
MEG_8651|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACL Biocide resistance. No mapping
MEG_5337|Drugs|Fluoroquinolones|Fluoroquinolone-resistant_DNA_topoisomerases|PARC|RequiresSNPConfirmation 3000274
MEG_7344|Drugs|Glycopeptides|VanA-type_resistance_protein|VANA 3000010
MEG_5780|Drugs|Lipopeptides|Daptomycin-resistant_mutant|PGSA|RequiresSNPConfirmation 3003323
MEG_8647|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACF Biocide resistance. No mapping
MEG_4033|Drugs|MLS|Macrolide_phosphotransferases|MPHB 3000318
MEG_8645|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACC Biocide resistance. No mapping
MEG_3980|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004165
MEG_1|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|A16S|RequiresSNPConfirmation 3003485
MEG_6963|Drugs|Tetracyclines|Tetracycline-resistant_16S_ribosomal_subunit_protein|TET16S|RequiresSNPConfirmation 3003510
MEG_3588|Drugs|Lipopeptides|Daptomycin-resistant_mutant|LIAFSR|RequiresSNPConfirmation 3003077
MEG_5781|Drugs|Phenicol|Phenicol-resistant_23S_rRNA_mutation|PH23S|RequiresSNPConfirmation 3004180
MEG_3857|Metals|Mercury_resistance|Mercury_resistance_protein|MERC Metal resistance. No mapping
MEG_3982|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004163
MEG_2430|Drugs|betalactams|Class_A_betalactamases|CTX 3000016
MEG_8648|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACG Biocide resistance. No mapping
MEG_8650|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_SMR_efflux_pumps|QACH Biocide resistance. No mapping
MEG_3445|Drugs|Mycobacterium_tuberculosis-specific_Drug|Isoniazid-resistant_mutant|KASA|RequiresSNPConfirmation 3003463
MEG_7259|Drugs|Aminoglycosides|Aminoglycoside-resistant_arabinosyltransferase|TLYA|RequiresSNPConfirmation 3003465
MEG_1983|Drugs|betalactams|Class_C_betalactamases|CMY 3002095
MEG_7075|Drugs|Tetracyclines|Tetracycline_resistance_MFS_efflux_pumps|TETE 3000173
MEG_3983|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004177
MEG_6147|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|RRSH|RequiresSNPConfirmation 3003372
MEG_8254|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004836
MEG_6493|Drugs|betalactams|Class_A_betalactamases|SHV 3001139
MEG_3993|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004168
MEG_1319|Drugs|betalactams|Class_A_betalactamases|BLASME 3002379
MEG_5208|Drugs|betalactams|Class_D_betalactamases|OXA 3001410
MEG_2414|Drugs|betalactams|Class_A_betalactamases|CTX 3001904
MEG_2421|Drugs|betalactams|Class_A_betalactamases|CTX 3001927
MEG_3976|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004134
MEG_6875|Drugs|betalactams|Class_A_betalactamases|TEM 3000884
MEG_3989|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004179
MEG_6964|Drugs|Tetracyclines|Tetracycline-resistant_16S_ribosomal_subunit_protein|TET16S|RequiresSNPConfirmation 3003499
MEG_2|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|A16S|RequiresSNPConfirmation 3003512
MEG_3975|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004169
MEG_2423|Drugs|betalactams|Class_A_betalactamases|CTX 3001932
MEG_8263|Multi-compound|Drug_and_biocide_resistance|Drug_and_biocide_RND_efflux_pumps|MTRC|RequiresSNPConfirmation Biocide resistance. No mapping
MEG_985|Drugs|Aminoglycosides|Aminoglycoside_O-nucleotidyltransferases|ANT4-PRIME 3000229
MEG_3979|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004176
MEG_3990|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004171
MEG_2425|Drugs|betalactams|Class_A_betalactamases|CTX 3002002
MEG_3129|Drugs|betalactams|Class_A_betalactamases|GES 3002337
MEG_3131|Drugs|betalactams|Class_A_betalactamases|GES 3002350
MEG_6146|Drugs|Aminoglycosides|Aminoglycoside-resistant_16S_ribosomal_subunit_protein|RRSC|RequiresSNPConfirmation 3003333
MEG_3393|Drugs|betalactams|Class_B_betalactamases|IMP 3002223
MEG_3991|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004133
MEG_8679|Drugs|Oxazolidinone|Oxazolidinone-resistant_23S_rRNA_mutation|RRL|RequiresSNPConfirmation 3004937
MEG_2427|Drugs|betalactams|Class_A_betalactamases|CTX 3001982
MEG_1490|Drugs|Cationic_antimicrobial_peptides|Cationic_peptide-resistant_16S_ribosomal_subunit_protein|CAP16S|RequiresSNPConfirmation 3003223
MEG_2393|Drugs|betalactams|Class_A_betalactamases|CTX 3001960
MEG_333|Drugs|Aminoglycosides|Aminoglycoside_N-acetyltransferases|AAC6-PRIME 3002578
MEG_3396|Drugs|betalactams|Class_B_betalactamases|IMP 3002205
MEG_1544|Drugs|betalactams|Class_A_betalactamases|CARB 3002243
MEG_2429|Drugs|betalactams|Class_A_betalactamases|CTX 3001943
MEG_5148|Drugs|betalactams|Class_D_betalactamases|OXA 3001555
MEG_7604|Drugs|Glycopeptides|VanD-type_accessory_protein|VANYD 3002957
MEG_8253|Drugs|MLS|Macrolide-resistant_23S_rRNA_mutation|MLS23S|RequiresSNPConfirmation 3004836
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