ADD: measure time taken to run argnorm on example inputs in integrati…

…on_tests/run_argnorm.py (#91)

integration_tests/run_argnorm.py

@@ -1,6 +1,7 @@
 import subprocess
 import pandas as pd
 import os
+import time
 
 os.makedirs('integration_tests/outputs/raw', exist_ok=True)
 os.makedirs('integration_tests/outputs/hamronized', exist_ok=True)
@@ -18,8 +19,11 @@ def run_cli_test(tool, file, folder, db=None):
 
     if tool in  ['abricate', 'groot']:
         command += ['--db', db]
-
+
+    start = time.time()
     subprocess.check_call(command)
+    end = time.time()
+    print(f'{tool} {file} {folder} : {end-start:.2f}s')
 
     output = pd.read_csv(f'integration_tests/outputs/{folder}/{file}', sep='\t')
     golden_file = pd.read_csv(f'outputs/{folder}/{file}', sep='\t')