ADD Cut_Off column to argNorm outputs
#90
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RGI Cut_Off scores for all ARO mappings are now added to argNorm outputs. These Cut_Off scores are stored with ARO mappings in ARO mapping tables. Manually curated genes are assigned 'Manual Curation' as the cut-off score. All other genes use RGI's standard 'Perfect', 'Strict', and 'Loose' cut-offs.
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Thanks. Two related requests:
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…f in get_aro_mapping_table() rather than storing it in manual curation tables.
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Done! There's still a diff for groot curation. I looked into it, and this is once again the same case of manual curation files initially being saved as CRLF and now changing to LF, so I committed the change |
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RGI Cut_Off scores for all ARO mappings are now added to argNorm outputs. These Cut_Off scores are stored with ARO mappings in ARO mapping tables. Manually curated genes are assigned 'Manual Curation' as the cut-off score. All other genes use RGI's standard 'Perfect', 'Strict', and 'Loose' cut-offs.