test3

.github/workflows/workflows.yml

@@ -1,7 +1,7 @@
 name: publish
 on: [push]
 jobs:
-publish-hello-docker-image:
+publish-test-docker-image:
 runs-on: ubuntu-latest
 steps:
 - uses: actions/checkout@v2
@@ -11,8 +11,8 @@ with:
 registry: ghcr.io
 username: ${{ github.actor }}
 password: ${{ secrets.GITHUB_TOKEN }}
-- name: Build the hello-docker Docker image
+- name: Build the test-docker Docker image
 run: |
-       docker build . --tag ghcr.io/jarochi/docker_test:latest
-       docker run ghcr.io/jarochi/docker_test:latest
-       docker push ghcr.io/jarochi/docker_test:latest
+       docker build . --tag ghcr.io/BioGenies/imputomics:docker_test
+       docker run ghcr.io/BioGenies/imputomics:docker_test
+       docker push ghcr.io/BioGenies/imputomics:docker_test

Dockerfile

@@ -9,8 +9,9 @@ RUN [ $(which google-chrome) ] || curl -fsSL -o /tmp/google-chrome.deb https://d
 RUN [ $(which google-chrome) ] || DEBIAN_FRONTEND='noninteractive' apt-get install -y /tmp/google-chrome.deb
 RUN apt-get install -y libcurl4-openssl-dev libssl-dev libicu-dev && rm -rf /var/lib/apt/lists/*
 RUN mkdir -p /usr/local/lib/R/etc/ /usr/lib/R/etc/
-RUN echo "options(renv.config.pak.enabled = FALSE, repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl', Ncpus = 4)" | tee /usr/local/lib/R/etc/Rprofile.site | tee /usr/lib/R/etc/Rprofile.site
+RUN echo "options(renv.config.pak.enabled = FALSE, repos = c(CRAN = 'https://cloud.r-project.org'), download.file.method = 'libcurl', Ncpus = 4)" | tee /usr/local/lib/R/etc/Rprofile.site | tee /usr/lib/R/etc/Rprofile.site
 RUN R -e 'install.packages("remotes")'
 RUN R -e 'remotes::install_version("renv", version = "0.17.0")'
+RUN R -e 'remotes::install_version("BiocManager", version = "1.30.20")'
 COPY renv.lock renv.lock
 RUN R -e 'renv::restore()'