fix pytest expected failures

BioPandas · Jul 8, 2024 · 77cc989 · 77cc989
1 parent 5a4bee3
commit 77cc989
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Showing 5 changed files with 13 additions and 13 deletions.
diff --git a/biopandas/mmcif/tests/test_read_mmcif.py b/biopandas/mmcif/tests/test_read_mmcif.py
@@ -280,7 +280,7 @@ def test_read_pdb_with_pathlib():
 #    assert ppdb.code == "4eiy", ppdb.code
 
 
-@pytest.mark.xfail(AttributeError)
+@pytest.mark.xfail(raises=AttributeError)
 def test_get_exceptions():
     ppdb = PandasMmcif()
     ppdb.read_mmcif(TESTDATA_FILENAME)

diff --git a/biopandas/mmcif/tests/test_rmsd.py b/biopandas/mmcif/tests/test_rmsd.py
@@ -32,17 +32,17 @@ def test_equal():
     assert r == 0.000, r
 
 
-@pytest.mark.xfail(AttributeError)
+@pytest.mark.xfail(raises=AttributeError)
 def test_wrong_arg():
     PandasMmcif.rmsd(p1t48.df["ATOM"].loc[1:, :], p1t48.df["ATOM"], s="bla")
 
 
-@pytest.mark.xfail(AttributeError)
+@pytest.mark.xfail(raises=AttributeError)
 def test_incompatible():
     PandasMmcif.rmsd(p1t48.df["ATOM"].loc[1:, :], p1t48.df["ATOM"], s=None)
 
 
-@pytest.mark.xfail(AttributeError)
+@pytest.mark.xfail(raises=AttributeError)
 def test_invalid_query():
     PandasMmcif.rmsd(p1t48.df["ATOM"].loc[1:, :], p1t48.df["ATOM"], s="bla")
 

diff --git a/biopandas/mmtf/tests/test_rmsd.py b/biopandas/mmtf/tests/test_rmsd.py
@@ -36,17 +36,17 @@ def test_equal():
     assert r == 0.000, r
 
 
-@pytest.mark.xfail(AttributeError)
+@pytest.mark.xfail(raises=AttributeError)
 def test_wrong_arg():
     PandasMmtf.rmsd(p1t48.df["ATOM"].loc[1:, :], p1t48.df["ATOM"], s="bla")
 
 
-@pytest.mark.xfail(AttributeError)
+@pytest.mark.xfail(raises=AttributeError)
 def test_incompatible():
     PandasMmtf.rmsd(p1t48.df["ATOM"].loc[1:, :], p1t48.df["ATOM"], s=None)
 
 
-@pytest.mark.xfail(AttributeError)
+@pytest.mark.xfail(raises=AttributeError)
 def test_invalid_query():
     PandasMmtf.rmsd(p1t48.df["ATOM"].loc[1:, :], p1t48.df["ATOM"], s="bla")
 

diff --git a/biopandas/pdb/tests/test_gyradius.py b/biopandas/pdb/tests/test_gyradius.py
@@ -38,12 +38,12 @@ def test_atom_and_hetatm():
     assert rg == expected_rg, f"Expected {expected_rg}, got {rg} instead"
 
 
-@pytest.mark.xfail(KeyError)
+@pytest.mark.xfail(raises=KeyError)
 def test_wrong_record_name():
     p1t48.gyradius(("Wrong",))
 
 
-@pytest.mark.xfail(TypeError)
+@pytest.mark.xfail(raises=TypeError)
 def test_wrong_arg_type():
     p1t48.gyradius(5)
 
@@ -60,7 +60,7 @@ def test_negative_decimals():
     assert rg == expected_rg, f"Expected {expected_rg}, got {rg} instead"
 
 
-@pytest.mark.xfail(TypeError)
+@pytest.mark.xfail(raises=TypeError)
 def test_wrong_decimals_arg():
     p1t48.gyradius(decimals='five')
 

diff --git a/biopandas/pdb/tests/test_rmsd.py b/biopandas/pdb/tests/test_rmsd.py
@@ -31,17 +31,17 @@ def test_equal():
     assert r == 0.000, r
 
 
-@pytest.mark.xfail(AttributeError)
+@pytest.mark.xfail(raises=AttributeError)
 def test_wrong_arg():
     PandasPdb.rmsd(p1t48.df["ATOM"].loc[1:, :], p1t48.df["ATOM"], s="bla")
 
 
-@pytest.mark.xfail(AttributeError)
+@pytest.mark.xfail(raises=AttributeError)
 def test_incompatible():
     PandasPdb.rmsd(p1t48.df["ATOM"].loc[1:, :], p1t48.df["ATOM"], s=None)
 
 
-@pytest.mark.xfail(AttributeError)
+@pytest.mark.xfail(raises=AttributeError)
 def test_invalid_query():
     PandasPdb.rmsd(p1t48.df["ATOM"].loc[1:, :], p1t48.df["ATOM"], s="bla")