biocdeps.json

{
    "a4": [
        "a4Base",
        "a4Preproc",
        "a4Classif",
        "a4Core",
        "a4Reporting",
        "Biobase",
        "annaffy",
        "genefilter",
        "limma",
        "multtest",
        "BiocGenerics",
        "AnnotationDbi",
        "MatrixGenerics",
        "annotate",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "a4Base": [
        "a4Preproc",
        "a4Core",
        "Biobase",
        "annaffy",
        "genefilter",
        "limma",
        "multtest",
        "BiocGenerics",
        "AnnotationDbi",
        "MatrixGenerics",
        "annotate",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "a4Classif": [
        "a4Core",
        "a4Preproc",
        "Biobase",
        "BiocGenerics"
    ],
    "a4Core": [
        "Biobase",
        "BiocGenerics"
    ],
    "a4Preproc": [
        "BiocGenerics",
        "Biobase"
    ],
    "a4Reporting": [

    ],
    "ABarray": [
        "Biobase",
        "multtest",
        "BiocGenerics"
    ],
    "abseqR": [
        "BiocParallel",
        "BiocStyle"
    ],
    "ABSSeq": [
        "limma"
    ],
    "acde": [

    ],
    "ACE": [
        "Biobase",
        "QDNAseq",
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "CGHbase",
        "CGHcall",
        "DNAcopy",
        "Rsamtools",
        "marray",
        "impute",
        "UCSC.utils",
        "Biostrings",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "limma"
    ],
    "aCGH": [
        "multtest",
        "Biobase",
        "BiocGenerics"
    ],
    "ACME": [
        "Biobase",
        "BiocGenerics"
    ],
    "ADaCGH2": [
        "GLAD",
        "DNAcopy",
        "tilingArray",
        "aCGH",
        "multtest",
        "Biobase",
        "affy",
        "vsn",
        "genefilter",
        "BiocGenerics",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "MatrixGenerics",
        "AnnotationDbi",
        "annotate",
        "limma",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils"
    ],
    "ADAM": [
        "KEGGREST",
        "SummarizedExperiment",
        "AnnotationDbi",
        "Biostrings",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "XVector",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ADAMgui": [
        "ADAM",
        "KEGGREST",
        "SummarizedExperiment",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "Biostrings",
        "MatrixGenerics",
        "GenomicRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "XVector",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ADAPT": [
        "phyloseq",
        "Biobase",
        "BiocGenerics",
        "biomformat",
        "Biostrings",
        "multtest",
        "rhdf5",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc"
    ],
    "adductomicsR": [
        "ExperimentHub",
        "AnnotationHub",
        "mzR",
        "BiocGenerics",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "S4Vectors",
        "Biobase",
        "ProtGenerics",
        "Rhdf5lib",
        "IRanges",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ADImpute": [
        "BiocParallel",
        "S4Vectors",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "adSplit": [
        "AnnotationDbi",
        "Biobase",
        "KEGGREST",
        "multtest",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "adverSCarial": [
        "S4Vectors",
        "DelayedArray",
        "BiocGenerics",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "XVector",
        "zlibbioc"
    ],
    "AffiXcan": [
        "SummarizedExperiment",
        "MultiAssayExperiment",
        "BiocParallel",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "affxparser": [

    ],
    "affy": [
        "BiocGenerics",
        "Biobase",
        "affyio",
        "preprocessCore",
        "zlibbioc"
    ],
    "affycomp": [
        "Biobase",
        "BiocGenerics"
    ],
    "affyContam": [
        "Biobase",
        "affy",
        "BiocGenerics",
        "affyio",
        "preprocessCore",
        "zlibbioc"
    ],
    "affycoretools": [
        "Biobase",
        "affy",
        "limma",
        "GOstats",
        "gcrma",
        "AnnotationDbi",
        "oligoClasses",
        "ReportingTools",
        "S4Vectors",
        "edgeR",
        "BiocGenerics",
        "Glimma",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "IRanges",
        "KEGGREST",
        "XVector",
        "Biostrings",
        "DESeq2",
        "SummarizedExperiment",
        "Category",
        "graph",
        "RBGL",
        "annotate",
        "AnnotationForge",
        "Rgraphviz",
        "GenomicRanges",
        "GSEABase",
        "ggbio",
        "GenomeInfoDb",
        "genefilter",
        "BiocParallel",
        "MatrixGenerics",
        "biovizBase",
        "Rsamtools",
        "GenomicAlignments",
        "BSgenome",
        "VariantAnnotation",
        "rtracklayer",
        "GenomicFeatures",
        "OrganismDbi",
        "ensembldb",
        "AnnotationFilter",
        "S4Arrays",
        "DelayedArray",
        "BiocIO",
        "SparseArray",
        "ProtGenerics",
        "UCSC.utils",
        "txdbmaker",
        "Rhtslib",
        "biomaRt",
        "BiocFileCache"
    ],
    "affyILM": [
        "gcrma",
        "affxparser",
        "affy",
        "Biobase",
        "BiocGenerics",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "XVector",
        "Biostrings",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "UCSC.utils"
    ],
    "affyio": [
        "zlibbioc"
    ],
    "affylmGUI": [
        "limma",
        "affy",
        "affyio",
        "affyPLM",
        "gcrma",
        "BiocGenerics",
        "AnnotationDbi",
        "Biobase",
        "preprocessCore",
        "zlibbioc",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "XVector",
        "Biostrings",
        "GenomeInfoDb",
        "UCSC.utils"
    ],
    "affyPLM": [
        "BiocGenerics",
        "affy",
        "Biobase",
        "gcrma",
        "preprocessCore",
        "zlibbioc",
        "affyio",
        "XVector",
        "Biostrings",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "UCSC.utils"
    ],
    "AffyRNADegradation": [
        "affy",
        "BiocGenerics",
        "Biobase",
        "affyio",
        "preprocessCore",
        "zlibbioc"
    ],
    "AGDEX": [
        "Biobase",
        "GSEABase",
        "BiocGenerics",
        "annotate",
        "graph",
        "AnnotationDbi",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "aggregateBioVar": [
        "S4Vectors",
        "SummarizedExperiment",
        "SingleCellExperiment",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "agilp": [

    ],
    "AgiMicroRna": [
        "Biobase",
        "limma",
        "affy",
        "preprocessCore",
        "affycoretools",
        "BiocGenerics",
        "affyio",
        "zlibbioc",
        "GOstats",
        "gcrma",
        "AnnotationDbi",
        "oligoClasses",
        "ReportingTools",
        "S4Vectors",
        "edgeR",
        "Glimma",
        "IRanges",
        "KEGGREST",
        "XVector",
        "Biostrings",
        "DESeq2",
        "SummarizedExperiment",
        "Category",
        "graph",
        "RBGL",
        "annotate",
        "AnnotationForge",
        "Rgraphviz",
        "GenomicRanges",
        "GSEABase",
        "ggbio",
        "GenomeInfoDb",
        "genefilter",
        "BiocParallel",
        "MatrixGenerics",
        "biovizBase",
        "Rsamtools",
        "GenomicAlignments",
        "BSgenome",
        "VariantAnnotation",
        "rtracklayer",
        "GenomicFeatures",
        "OrganismDbi",
        "ensembldb",
        "AnnotationFilter",
        "S4Arrays",
        "DelayedArray",
        "BiocIO",
        "SparseArray",
        "ProtGenerics",
        "UCSC.utils",
        "txdbmaker",
        "Rhtslib",
        "biomaRt",
        "BiocFileCache"
    ],
    "AHMassBank": [
        "AnnotationHubData",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "AnnotationHub",
        "GenomicFeatures",
        "Rsamtools",
        "rtracklayer",
        "BiocGenerics",
        "biocViews",
        "BiocCheck",
        "graph",
        "AnnotationDbi",
        "Biobase",
        "Biostrings",
        "GenomeInfoDb",
        "OrganismDbi",
        "AnnotationForge",
        "KEGGREST",
        "BiocFileCache",
        "BiocVersion",
        "BiocBaseUtils",
        "RBGL",
        "XVector",
        "UCSC.utils",
        "txdbmaker",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "biomaRt",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "AIMS": [
        "Biobase",
        "BiocGenerics"
    ],
    "airpart": [
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "scater",
        "apeglm",
        "ComplexHeatmap",
        "GenomicRanges",
        "IRanges",
        "BiocGenerics",
        "scuttle",
        "MatrixGenerics",
        "SparseArray",
        "DelayedArray",
        "beachmat",
        "BiocNeighbors",
        "BiocSingular",
        "BiocParallel",
        "Biobase",
        "GenomeInfoDb",
        "S4Arrays",
        "assorthead",
        "ScaledMatrix",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "alabaster": [
        "alabaster.base",
        "alabaster.matrix",
        "alabaster.ranges",
        "alabaster.se",
        "alabaster.sce",
        "alabaster.spatial",
        "alabaster.string",
        "alabaster.vcf",
        "alabaster.bumpy",
        "alabaster.mae",
        "alabaster.schemas",
        "S4Vectors",
        "rhdf5",
        "Rhdf5lib",
        "BumpyMatrix",
        "BiocGenerics",
        "IRanges",
        "MultiAssayExperiment",
        "DelayedArray",
        "S4Arrays",
        "SparseArray",
        "HDF5Array",
        "GenomicRanges",
        "GenomeInfoDb",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "SpatialExperiment",
        "Biostrings",
        "VariantAnnotation",
        "Rsamtools",
        "XVector",
        "MatrixGenerics",
        "UCSC.utils",
        "rhdf5filters",
        "Biobase",
        "BiocBaseUtils",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "BiocFileCache",
        "AnnotationDbi",
        "rtracklayer",
        "BSgenome",
        "GenomicFeatures",
        "KEGGREST",
        "BiocIO",
        "GenomicAlignments"
    ],
    "alabaster.base": [
        "alabaster.schemas",
        "S4Vectors",
        "rhdf5",
        "Rhdf5lib",
        "rhdf5filters",
        "BiocGenerics"
    ],
    "alabaster.bumpy": [
        "BumpyMatrix",
        "alabaster.base",
        "rhdf5",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "alabaster.schemas",
        "Rhdf5lib",
        "rhdf5filters"
    ],
    "alabaster.files": [
        "alabaster.base",
        "S4Vectors",
        "BiocGenerics",
        "Rsamtools",
        "alabaster.schemas",
        "rhdf5",
        "Rhdf5lib",
        "GenomeInfoDb",
        "GenomicRanges",
        "Biostrings",
        "IRanges",
        "XVector",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "UCSC.utils",
        "rhdf5filters"
    ],
    "alabaster.mae": [
        "MultiAssayExperiment",
        "alabaster.base",
        "alabaster.se",
        "S4Vectors",
        "rhdf5",
        "alabaster.schemas",
        "Rhdf5lib",
        "SummarizedExperiment",
        "alabaster.ranges",
        "alabaster.matrix",
        "BiocGenerics",
        "IRanges",
        "GenomicRanges",
        "Biobase",
        "BiocBaseUtils",
        "DelayedArray",
        "rhdf5filters",
        "S4Arrays",
        "SparseArray",
        "HDF5Array",
        "GenomeInfoDb",
        "MatrixGenerics",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "alabaster.matrix": [
        "alabaster.base",
        "BiocGenerics",
        "S4Vectors",
        "DelayedArray",
        "S4Arrays",
        "SparseArray",
        "rhdf5",
        "HDF5Array",
        "alabaster.schemas",
        "Rhdf5lib",
        "MatrixGenerics",
        "IRanges",
        "rhdf5filters",
        "XVector",
        "zlibbioc"
    ],
    "alabaster.ranges": [
        "GenomicRanges",
        "alabaster.base",
        "S4Vectors",
        "BiocGenerics",
        "IRanges",
        "GenomeInfoDb",
        "rhdf5",
        "alabaster.schemas",
        "Rhdf5lib",
        "UCSC.utils",
        "XVector",
        "rhdf5filters",
        "zlibbioc"
    ],
    "alabaster.sce": [
        "SingleCellExperiment",
        "alabaster.base",
        "alabaster.se",
        "alabaster.schemas",
        "S4Vectors",
        "rhdf5",
        "Rhdf5lib",
        "SummarizedExperiment",
        "alabaster.ranges",
        "alabaster.matrix",
        "BiocGenerics",
        "IRanges",
        "GenomicRanges",
        "DelayedArray",
        "S4Arrays",
        "SparseArray",
        "HDF5Array",
        "GenomeInfoDb",
        "MatrixGenerics",
        "XVector",
        "rhdf5filters",
        "Biobase",
        "UCSC.utils",
        "zlibbioc"
    ],
    "alabaster.schemas": [

    ],
    "alabaster.se": [
        "SummarizedExperiment",
        "alabaster.base",
        "alabaster.ranges",
        "alabaster.matrix",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "alabaster.schemas",
        "rhdf5",
        "Rhdf5lib",
        "DelayedArray",
        "S4Arrays",
        "SparseArray",
        "HDF5Array",
        "GenomeInfoDb",
        "XVector",
        "MatrixGenerics",
        "Biobase",
        "UCSC.utils",
        "rhdf5filters",
        "zlibbioc"
    ],
    "alabaster.spatial": [
        "SpatialExperiment",
        "alabaster.base",
        "S4Vectors",
        "alabaster.sce",
        "rhdf5",
        "alabaster.schemas",
        "Rhdf5lib",
        "SingleCellExperiment",
        "alabaster.se",
        "rhdf5filters",
        "BiocGenerics",
        "SummarizedExperiment",
        "BiocFileCache",
        "alabaster.ranges",
        "alabaster.matrix",
        "IRanges",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "HDF5Array",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "alabaster.string": [
        "Biostrings",
        "alabaster.base",
        "S4Vectors",
        "alabaster.schemas",
        "rhdf5",
        "Rhdf5lib",
        "BiocGenerics",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "rhdf5filters",
        "zlibbioc"
    ],
    "alabaster.vcf": [
        "alabaster.base",
        "VariantAnnotation",
        "S4Vectors",
        "alabaster.se",
        "alabaster.string",
        "Rsamtools",
        "alabaster.schemas",
        "rhdf5",
        "Rhdf5lib",
        "SummarizedExperiment",
        "alabaster.ranges",
        "alabaster.matrix",
        "BiocGenerics",
        "IRanges",
        "GenomicRanges",
        "Biostrings",
        "GenomeInfoDb",
        "XVector",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "AnnotationDbi",
        "rtracklayer",
        "BSgenome",
        "GenomicFeatures",
        "DelayedArray",
        "S4Arrays",
        "SparseArray",
        "HDF5Array",
        "KEGGREST",
        "BiocIO",
        "UCSC.utils",
        "rhdf5filters",
        "GenomicAlignments"
    ],
    "ALDEx2": [
        "BiocParallel",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "SummarizedExperiment",
        "multtest",
        "BiocGenerics",
        "GenomeInfoDb",
        "XVector",
        "Biobase",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "alevinQC": [
        "tximport"
    ],
    "AllelicImbalance": [
        "GenomicRanges",
        "SummarizedExperiment",
        "GenomicAlignments",
        "BiocGenerics",
        "AnnotationDbi",
        "BSgenome",
        "VariantAnnotation",
        "Biostrings",
        "S4Vectors",
        "IRanges",
        "Rsamtools",
        "GenomicFeatures",
        "Gviz",
        "GenomeInfoDb",
        "Biobase",
        "KEGGREST",
        "XVector",
        "BiocIO",
        "rtracklayer",
        "UCSC.utils",
        "BiocParallel",
        "biomaRt",
        "ensembldb",
        "biovizBase",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "BiocFileCache",
        "AnnotationFilter",
        "SparseArray",
        "ProtGenerics"
    ],
    "AlphaBeta": [
        "BiocParallel"
    ],
    "AlphaMissenseR": [
        "BiocFileCache",
        "BiocBaseUtils"
    ],
    "AlpsNMR": [
        "mixOmics",
        "BiocParallel",
        "MassSpecWavelet",
        "impute"
    ],
    "altcdfenvs": [
        "BiocGenerics",
        "S4Vectors",
        "Biobase",
        "affy",
        "makecdfenv",
        "Biostrings",
        "hypergraph",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "graph",
        "UCSC.utils"
    ],
    "AMARETTO": [
        "impute",
        "ComplexHeatmap",
        "BiocFileCache",
        "MultiAssayExperiment",
        "limma",
        "IRanges",
        "AnnotationHub",
        "ExperimentHub",
        "HDF5Array",
        "S4Vectors",
        "SummarizedExperiment",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "BiocVersion",
        "AnnotationDbi",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "KEGGREST",
        "UCSC.utils",
        "zlibbioc",
        "Biostrings"
    ],
    "AMOUNTAIN": [

    ],
    "amplican": [
        "BiocGenerics",
        "Biostrings",
        "pwalign",
        "S4Vectors",
        "ShortRead",
        "IRanges",
        "GenomicRanges",
        "GenomeInfoDb",
        "BiocParallel",
        "XVector",
        "UCSC.utils",
        "Rsamtools",
        "GenomicAlignments",
        "Biobase",
        "Rhtslib",
        "SummarizedExperiment",
        "zlibbioc",
        "MatrixGenerics",
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    "atena": [
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        "BiocIO"
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    "attract": [
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        "zlibbioc"
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        "edgeR",
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        "SummarizedExperiment",
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    "BADER": [

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        "DelayedArray",
        "SparseArray"
    ],
    "bambu": [
        "SummarizedExperiment",
        "S4Vectors",
        "BSgenome",
        "IRanges",
        "BiocGenerics",
        "BiocParallel",
        "GenomeInfoDb",
        "GenomicAlignments",
        "GenomicFeatures",
        "GenomicRanges",
        "Rsamtools",
        "Biostrings",
        "BiocIO",
        "rtracklayer",
        "XVector",
        "UCSC.utils",
        "AnnotationDbi",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray"
    ],
    "bamsignals": [
        "BiocGenerics",
        "IRanges",
        "GenomicRanges",
        "zlibbioc",
        "Rhtslib",
        "S4Vectors",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils"
    ],
    "BANDITS": [
        "DRIMSeq",
        "BiocParallel",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "BiocGenerics",
        "limma",
        "edgeR",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "bandle": [
        "S4Vectors",
        "Biobase",
        "MSnbase",
        "pRoloc",
        "BiocParallel",
        "BiocStyle",
        "BiocGenerics",
        "mzR",
        "ProtGenerics",
        "MsCoreUtils",
        "PSMatch",
        "IRanges",
        "vsn",
        "affy",
        "impute",
        "pcaMethods",
        "mzID",
        "MLInterfaces",
        "biomaRt",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "AnnotationDbi",
        "BiocFileCache",
        "annotate",
        "genefilter",
        "SummarizedExperiment",
        "Rhdf5lib",
        "QFeatures",
        "limma",
        "KEGGREST",
        "MatrixGenerics",
        "MultiAssayExperiment",
        "AnnotationFilter",
        "GenomicRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "BiocBaseUtils"
    ],
    "Banksy": [
        "SpatialExperiment",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "BiocFileCache",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "banocc": [

    ],
    "barcodetrackR": [
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "basecallQC": [
        "ShortRead",
        "BiocGenerics",
        "BiocParallel",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "Biobase",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "pwalign",
        "XVector",
        "Rhtslib",
        "UCSC.utils",
        "SummarizedExperiment",
        "zlibbioc",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "BaseSpaceR": [

    ],
    "Basic4Cseq": [
        "Biostrings",
        "GenomicAlignments",
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "BSgenome",
        "SummarizedExperiment",
        "Rsamtools",
        "BiocParallel",
        "BiocIO",
        "rtracklayer",
        "UCSC.utils",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "BASiCS": [
        "SingleCellExperiment",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "scran",
        "scuttle",
        "SummarizedExperiment",
        "BiocParallel",
        "edgeR",
        "limma",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "BiocSingular",
        "bluster",
        "metapod",
        "beachmat",
        "GenomicRanges",
        "SparseArray",
        "IRanges",
        "GenomeInfoDb",
        "assorthead",
        "ScaledMatrix",
        "BiocNeighbors",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "BASiCStan": [
        "BASiCS",
        "glmGamPoi",
        "scran",
        "scuttle",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "BiocParallel",
        "DelayedMatrixStats",
        "MatrixGenerics",
        "SparseArray",
        "DelayedArray",
        "HDF5Array",
        "beachmat",
        "edgeR",
        "limma",
        "S4Arrays",
        "BiocSingular",
        "bluster",
        "metapod",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "assorthead",
        "ScaledMatrix",
        "BiocNeighbors",
        "sparseMatrixStats",
        "UCSC.utils",
        "XVector",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "zlibbioc"
    ],
    "BasicSTARRseq": [
        "GenomicRanges",
        "GenomicAlignments",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "BiocGenerics",
        "UCSC.utils",
        "SummarizedExperiment",
        "Biostrings",
        "Rsamtools",
        "BiocParallel",
        "XVector",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "basilisk": [
        "dir.expiry",
        "basilisk.utils"
    ],
    "basilisk.utils": [
        "dir.expiry"
    ],
    "batchelor": [
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "BiocNeighbors",
        "BiocSingular",
        "SparseArray",
        "DelayedArray",
        "DelayedMatrixStats",
        "BiocParallel",
        "scuttle",
        "ResidualMatrix",
        "ScaledMatrix",
        "beachmat",
        "assorthead",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "sparseMatrixStats",
        "GenomicRanges",
        "XVector",
        "Biobase",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BatchQC": [
        "DESeq2",
        "EBSeq",
        "limma",
        "scran",
        "SummarizedExperiment",
        "sva",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "BiocParallel",
        "MatrixGenerics",
        "SingleCellExperiment",
        "scuttle",
        "edgeR",
        "S4Arrays",
        "DelayedArray",
        "BiocSingular",
        "bluster",
        "metapod",
        "beachmat",
        "GenomeInfoDb",
        "genefilter",
        "SparseArray",
        "assorthead",
        "ScaledMatrix",
        "BiocNeighbors",
        "AnnotationDbi",
        "annotate",
        "UCSC.utils",
        "XVector",
        "KEGGREST",
        "zlibbioc",
        "Biostrings"
    ],
    "BayesKnockdown": [
        "Biobase",
        "BiocGenerics"
    ],
    "BayesSpace": [
        "SingleCellExperiment",
        "scater",
        "scran",
        "SummarizedExperiment",
        "rhdf5",
        "S4Vectors",
        "BiocFileCache",
        "BiocSingular",
        "BiocParallel",
        "BiocGenerics",
        "DelayedArray",
        "ScaledMatrix",
        "beachmat",
        "assorthead",
        "Rhdf5lib",
        "rhdf5filters",
        "scuttle",
        "MatrixGenerics",
        "SparseArray",
        "BiocNeighbors",
        "edgeR",
        "limma",
        "S4Arrays",
        "bluster",
        "metapod",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "bayNorm": [
        "SingleCellExperiment",
        "SummarizedExperiment",
        "BiocParallel",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "baySeq": [
        "edgeR",
        "GenomicRanges",
        "limma",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BBCAnalyzer": [
        "SummarizedExperiment",
        "VariantAnnotation",
        "Rsamtools",
        "GenomicRanges",
        "IRanges",
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "AnnotationDbi",
        "rtracklayer",
        "BSgenome",
        "GenomicFeatures",
        "KEGGREST",
        "BiocIO",
        "SparseArray",
        "UCSC.utils",
        "GenomicAlignments"
    ],
    "BCRANK": [
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "bcSeq": [
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "beachmat": [
        "DelayedArray",
        "SparseArray",
        "BiocGenerics",
        "assorthead",
        "MatrixGenerics",
        "S4Vectors",
        "IRanges",
        "S4Arrays",
        "XVector",
        "zlibbioc"
    ],
    "beachmat.hdf5": [
        "beachmat",
        "HDF5Array",
        "DelayedArray",
        "assorthead",
        "Rhdf5lib",
        "SparseArray",
        "BiocGenerics",
        "MatrixGenerics",
        "S4Vectors",
        "IRanges",
        "S4Arrays",
        "rhdf5",
        "rhdf5filters",
        "XVector",
        "zlibbioc"
    ],
    "beadarray": [
        "BiocGenerics",
        "Biobase",
        "BeadDataPackR",
        "limma",
        "AnnotationDbi",
        "GenomicRanges",
        "IRanges",
        "illuminaio",
        "S4Vectors",
        "KEGGREST",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "Biostrings",
        "zlibbioc"
    ],
    "BeadDataPackR": [

    ],
    "BEAT": [
        "GenomicRanges",
        "ShortRead",
        "Biostrings",
        "BSgenome",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "BiocParallel",
        "GenomicAlignments",
        "Biobase",
        "pwalign",
        "Rhtslib",
        "UCSC.utils",
        "SummarizedExperiment",
        "zlibbioc",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "BEclear": [
        "BiocParallel"
    ],
    "beer": [
        "PhIPData",
        "edgeR",
        "BiocParallel",
        "SummarizedExperiment",
        "limma",
        "BiocFileCache",
        "BiocGenerics",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "MatrixGenerics",
        "Biobase",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "benchdamic": [
        "phyloseq",
        "TreeSummarizedExperiment",
        "BiocParallel",
        "zinbwave",
        "edgeR",
        "DESeq2",
        "limma",
        "ALDEx2",
        "SummarizedExperiment",
        "MAST",
        "ANCOMBC",
        "microbiome",
        "mixOmics",
        "NOISeq",
        "dearseq",
        "Maaslin2",
        "metagenomeSeq",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "multtest",
        "BiocGenerics",
        "Biobase",
        "MatrixGenerics",
        "SingleCellExperiment",
        "Wrench",
        "Biostrings",
        "biomformat",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "treeio",
        "genefilter",
        "rhdf5",
        "XVector",
        "SparseArray",
        "AnnotationDbi",
        "annotate",
        "UCSC.utils",
        "KEGGREST",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc"
    ],
    "BERT": [
        "limma",
        "sva",
        "SummarizedExperiment",
        "BiocParallel",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "genefilter",
        "edgeR",
        "SparseArray",
        "AnnotationDbi",
        "annotate",
        "UCSC.utils",
        "XVector",
        "KEGGREST",
        "zlibbioc",
        "Biostrings"
    ],
    "betaHMM": [
        "SummarizedExperiment",
        "S4Vectors",
        "GenomicRanges",
        "BiocGenerics",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "bettr": [
        "ComplexHeatmap",
        "SummarizedExperiment",
        "S4Vectors",
        "IRanges",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "BG2": [

    ],
    "BgeeCall": [
        "GenomicFeatures",
        "tximport",
        "Biostrings",
        "rtracklayer",
        "biomaRt",
        "rhdf5",
        "txdbmaker",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "GenomicRanges",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "UCSC.utils",
        "Biobase",
        "KEGGREST",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "BgeeDB": [
        "topGO",
        "graph",
        "Biobase",
        "zellkonverter",
        "HDF5Array",
        "BiocGenerics",
        "SparseArray",
        "DelayedArray",
        "rhdf5",
        "rhdf5filters",
        "S4Vectors",
        "IRanges",
        "S4Arrays",
        "Rhdf5lib",
        "AnnotationDbi",
        "basilisk",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "KEGGREST",
        "dir.expiry",
        "basilisk.utils",
        "MatrixGenerics",
        "GenomicRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "Biostrings",
        "zlibbioc"
    ],
    "BicARE": [
        "Biobase",
        "multtest",
        "GSEABase",
        "BiocGenerics",
        "AnnotationDbi",
        "annotate",
        "graph",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BiFET": [
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BiGGR": [
        "rsbml",
        "hyperdraw",
        "hypergraph",
        "graph",
        "Rgraphviz",
        "BiocGenerics"
    ],
    "bigmelon": [
        "wateRmelon",
        "gdsfmt",
        "minfi",
        "Biobase",
        "methylumi",
        "GEOquery",
        "BiocGenerics",
        "illuminaio",
        "limma",
        "SummarizedExperiment",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "annotate",
        "genefilter",
        "AnnotationDbi",
        "GenomicFeatures",
        "Biostrings",
        "bumphunter",
        "siggenes",
        "preprocessCore",
        "DelayedMatrixStats",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "lumi",
        "ROC",
        "KEGGREST",
        "XVector",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "UCSC.utils",
        "rtracklayer",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "affy",
        "multtest",
        "affyio",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
    "BindingSiteFinder": [
        "GenomicRanges",
        "rtracklayer",
        "S4Vectors",
        "GenomeInfoDb",
        "ComplexHeatmap",
        "GenomicFeatures",
        "IRanges",
        "BiocGenerics",
        "UCSC.utils",
        "AnnotationDbi",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Biobase",
        "KEGGREST",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "bioassayR": [
        "BiocGenerics",
        "ChemmineR"
    ],
    "Biobase": [
        "BiocGenerics"
    ],
    "biobroom": [
        "Biobase",
        "BiocGenerics"
    ],
    "biobtreeR": [

    ],
    "bioCancer": [
        "cBioPortalData",
        "AnnotationDbi",
        "Biobase",
        "geNetClassifier",
        "DOSE",
        "clusterProfiler",
        "ReactomePA",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "AnVIL",
        "MultiAssayExperiment",
        "BiocFileCache",
        "GenomeInfoDb",
        "GenomicRanges",
        "RaggedExperiment",
        "RTCGAToolbox",
        "SummarizedExperiment",
        "TCGAutils",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "BiocParallel",
        "fgsea",
        "EBarrays",
        "minet",
        "graphite",
        "AnVILBase",
        "BiocBaseUtils",
        "ggtree",
        "UCSC.utils",
        "XVector",
        "graph",
        "Biostrings",
        "DelayedArray",
        "MatrixGenerics",
        "S4Arrays",
        "GenomicFeatures",
        "GenomicDataCommons",
        "SparseArray",
        "rtracklayer",
        "treeio",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
    "BioCartaImage": [

    ],
    "BiocBaseUtils": [

    ],
    "BiocBook": [
        "BiocGenerics"
    ],
    "BiocCheck": [
        "BiocBaseUtils",
        "BiocFileCache",
        "biocViews",
        "graph",
        "Biobase",
        "RBGL",
        "BiocGenerics"
    ],
    "BiocFHIR": [
        "graph",
        "BiocBaseUtils",
        "BiocGenerics"
    ],
    "BiocFileCache": [

    ],
    "BiocGenerics": [

    ],
    "biocGraph": [
        "Rgraphviz",
        "graph",
        "geneplotter",
        "BiocGenerics",
        "Biobase",
        "annotate",
        "AnnotationDbi",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BiocHubsShiny": [
        "AnnotationHub",
        "ExperimentHub",
        "S4Vectors",
        "BiocGenerics",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "Biobase",
        "IRanges",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BiocIO": [
        "BiocGenerics",
        "S4Vectors"
    ],
    "BiocNeighbors": [
        "assorthead"
    ],
    "BioCor": [
        "BiocParallel",
        "GSEABase",
        "BiocGenerics",
        "Biobase",
        "annotate",
        "graph",
        "AnnotationDbi",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BiocParallel": [

    ],
    "BiocPkgTools": [
        "BiocFileCache",
        "biocViews",
        "RBGL",
        "graph",
        "Biobase",
        "BiocGenerics"
    ],
    "biocroxytest": [

    ],
    "BiocSet": [
        "S4Vectors",
        "BiocIO",
        "AnnotationDbi",
        "KEGGREST",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BiocSingular": [
        "BiocGenerics",
        "S4Vectors",
        "DelayedArray",
        "BiocParallel",
        "ScaledMatrix",
        "beachmat",
        "assorthead",
        "SparseArray",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "XVector",
        "zlibbioc"
    ],
    "BiocSklearn": [
        "SummarizedExperiment",
        "basilisk",
        "dir.expiry",
        "basilisk.utils",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "BiocStyle": [

    ],
    "biocthis": [

    ],
    "BiocVersion": [

    ],
    "biocViews": [
        "Biobase",
        "graph",
        "RBGL",
        "BiocGenerics"
    ],
    "BiocWorkflowTools": [
        "BiocStyle"
    ],
    "biodb": [
        "BiocFileCache"
    ],
    "biodbChebi": [
        "biodb",
        "BiocFileCache"
    ],
    "biodbHmdb": [
        "biodb",
        "BiocFileCache"
    ],
    "biodbNcbi": [
        "biodb",
        "BiocFileCache"
    ],
    "biodbNci": [
        "biodb",
        "BiocFileCache"
    ],
    "biodbUniprot": [
        "biodb",
        "BiocFileCache"
    ],
    "bioDist": [
        "Biobase",
        "BiocGenerics"
    ],
    "BioGA": [
        "SummarizedExperiment",
        "biocViews",
        "BiocStyle",
        "Biobase",
        "graph",
        "RBGL",
        "MatrixGenerics",
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "biomaRt": [
        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "biomformat": [
        "rhdf5",
        "Rhdf5lib",
        "rhdf5filters"
    ],
    "BioMVCClass": [
        "MVCClass",
        "Biobase",
        "graph",
        "Rgraphviz",
        "BiocGenerics"
    ],
    "biomvRCNS": [
        "IRanges",
        "GenomicRanges",
        "Gviz",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "XVector",
        "rtracklayer",
        "biomaRt",
        "AnnotationDbi",
        "Biobase",
        "GenomicFeatures",
        "ensembldb",
        "BSgenome",
        "Biostrings",
        "biovizBase",
        "Rsamtools",
        "GenomicAlignments",
        "KEGGREST",
        "BiocFileCache",
        "SummarizedExperiment",
        "VariantAnnotation",
        "AnnotationFilter",
        "BiocIO",
        "ProtGenerics",
        "UCSC.utils",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "BioNAR": [
        "fgsea",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocParallel",
        "graph",
        "impute",
        "preprocessCore",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BioNERO": [
        "sva",
        "ComplexHeatmap",
        "BiocParallel",
        "minet",
        "GENIE3",
        "SummarizedExperiment",
        "IRanges",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "genefilter",
        "limma",
        "edgeR",
        "impute",
        "preprocessCore",
        "AnnotationDbi",
        "KEGGREST",
        "SparseArray",
        "annotate",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "BioNet": [
        "graph",
        "RBGL",
        "AnnotationDbi",
        "Biobase",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BioQC": [
        "Biobase",
        "edgeR",
        "BiocGenerics",
        "limma"
    ],
    "biosigner": [
        "Biobase",
        "MultiAssayExperiment",
        "MultiDataSet",
        "ropls",
        "SummarizedExperiment",
        "BiocGenerics",
        "BiocBaseUtils",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "limma",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "Biostrings": [
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BioTIP": [
        "GenomicRanges",
        "scran",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "SingleCellExperiment",
        "scuttle",
        "SummarizedExperiment",
        "BiocParallel",
        "edgeR",
        "limma",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "BiocSingular",
        "bluster",
        "metapod",
        "beachmat",
        "SparseArray",
        "assorthead",
        "ScaledMatrix",
        "BiocNeighbors",
        "UCSC.utils",
        "Biobase",
        "zlibbioc"
    ],
    "biotmle": [
        "S4Vectors",
        "BiocGenerics",
        "BiocParallel",
        "SummarizedExperiment",
        "limma",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "biovizBase": [
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "SummarizedExperiment",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "GenomicFeatures",
        "AnnotationDbi",
        "VariantAnnotation",
        "ensembldb",
        "AnnotationFilter",
        "Biobase",
        "KEGGREST",
        "XVector",
        "rtracklayer",
        "ProtGenerics",
        "UCSC.utils",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "BSgenome",
        "BiocIO",
        "SparseArray"
    ],
    "BiRewire": [

    ],
    "biscuiteer": [
        "bsseq",
        "impute",
        "HDF5Array",
        "S4Vectors",
        "Rsamtools",
        "Biobase",
        "GenomicRanges",
        "IRanges",
        "BiocGenerics",
        "VariantAnnotation",
        "DelayedMatrixStats",
        "SummarizedExperiment",
        "GenomeInfoDb",
        "rtracklayer",
        "QDNAseq",
        "dmrseq",
        "BiocParallel",
        "ExperimentHub",
        "AnnotationHub",
        "limma",
        "DelayedArray",
        "BSgenome",
        "Biostrings",
        "rhdf5",
        "beachmat",
        "MatrixGenerics",
        "sparseMatrixStats",
        "SparseArray",
        "bumphunter",
        "annotatr",
        "UCSC.utils",
        "XVector",
        "rhdf5filters",
        "S4Arrays",
        "Rhdf5lib",
        "AnnotationDbi",
        "OrganismDbi",
        "GenomicFeatures",
        "CGHbase",
        "CGHcall",
        "DNAcopy",
        "zlibbioc",
        "Rhtslib",
        "GenomicAlignments",
        "BiocIO",
        "KEGGREST",
        "BiocFileCache",
        "BiocVersion",
        "regioneR",
        "assorthead",
        "marray",
        "graph",
        "RBGL",
        "txdbmaker",
        "biomaRt"
    ],
    "BiSeq": [
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "BiocGenerics",
        "Biobase",
        "GenomeInfoDb",
        "rtracklayer",
        "globaltest",
        "UCSC.utils",
        "XVector",
        "AnnotationDbi",
        "annotate",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "BiocParallel",
        "Rhtslib"
    ],
    "blacksheepr": [
        "ComplexHeatmap",
        "SummarizedExperiment",
        "IRanges",
        "DEXSeq",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "BiocParallel",
        "DESeq2",
        "AnnotationDbi",
        "biomaRt",
        "Rsamtools",
        "geneplotter",
        "genefilter",
        "UCSC.utils",
        "XVector",
        "KEGGREST",
        "BiocFileCache",
        "annotate",
        "Biostrings",
        "zlibbioc",
        "Rhtslib"
    ],
    "blima": [
        "beadarray",
        "Biobase",
        "BiocGenerics",
        "BeadDataPackR",
        "limma",
        "AnnotationDbi",
        "GenomicRanges",
        "IRanges",
        "illuminaio",
        "S4Vectors",
        "KEGGREST",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "Biostrings",
        "zlibbioc"
    ],
    "BLMA": [
        "ROntoTools",
        "PADOG",
        "limma",
        "graph",
        "Biobase",
        "BiocGenerics",
        "AnnotationDbi",
        "KEGGREST",
        "KEGGgraph",
        "Rgraphviz",
        "IRanges",
        "S4Vectors",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BloodGen3Module": [
        "SummarizedExperiment",
        "ExperimentHub",
        "ComplexHeatmap",
        "preprocessCore",
        "limma",
        "IRanges",
        "BiocGenerics",
        "AnnotationHub",
        "BiocFileCache",
        "S4Vectors",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "BiocVersion",
        "AnnotationDbi",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "KEGGREST",
        "zlibbioc",
        "Biostrings"
    ],
    "bluster": [
        "S4Vectors",
        "BiocParallel",
        "BiocNeighbors",
        "assorthead",
        "BiocGenerics"
    ],
    "bnbc": [
        "BiocGenerics",
        "SummarizedExperiment",
        "GenomicRanges",
        "IRanges",
        "rhdf5",
        "GenomeInfoDb",
        "S4Vectors",
        "preprocessCore",
        "sva",
        "EBImage",
        "HiCBricks",
        "UCSC.utils",
        "XVector",
        "BiocParallel",
        "Rhdf5lib",
        "rhdf5filters",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "genefilter",
        "limma",
        "edgeR",
        "SparseArray",
        "AnnotationDbi",
        "annotate",
        "zlibbioc",
        "KEGGREST",
        "Biostrings"
    ],
    "bnem": [
        "CellNOptR",
        "Rgraphviz",
        "epiNEM",
        "mnem",
        "Biobase",
        "graph",
        "affy",
        "limma",
        "sva",
        "vsn",
        "BiocGenerics",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "RBGL",
        "minet",
        "Linnorm",
        "genefilter",
        "BiocParallel",
        "edgeR",
        "MatrixGenerics",
        "AnnotationDbi",
        "annotate",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils"
    ],
    "BOBaFIT": [
        "ggbio",
        "GenomicRanges",
        "plyranges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "biovizBase",
        "Biobase",
        "SummarizedExperiment",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "BSgenome",
        "VariantAnnotation",
        "rtracklayer",
        "GenomicFeatures",
        "OrganismDbi",
        "ensembldb",
        "AnnotationDbi",
        "AnnotationFilter",
        "KEGGREST",
        "BiocIO",
        "ProtGenerics",
        "UCSC.utils",
        "BiocParallel",
        "graph",
        "RBGL",
        "txdbmaker",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "biomaRt",
        "BiocFileCache"
    ],
    "borealis": [
        "Biobase",
        "bsseq",
        "DSS",
        "GenomicRanges",
        "BiocGenerics",
        "SummarizedExperiment",
        "IRanges",
        "GenomeInfoDb",
        "S4Vectors",
        "DelayedMatrixStats",
        "limma",
        "DelayedArray",
        "BiocParallel",
        "BSgenome",
        "Biostrings",
        "HDF5Array",
        "rhdf5",
        "beachmat",
        "XVector",
        "SparseArray",
        "assorthead",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "MatrixGenerics",
        "S4Arrays",
        "sparseMatrixStats",
        "UCSC.utils",
        "rhdf5filters",
        "Rhdf5lib",
        "zlibbioc",
        "Rhtslib",
        "GenomicAlignments"
    ],
    "BPRMeth": [
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "BiocStyle",
        "BiocGenerics",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BRAIN": [
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "branchpointer": [
        "biomaRt",
        "Biostrings",
        "rtracklayer",
        "GenomicRanges",
        "GenomeInfoDb",
        "IRanges",
        "S4Vectors",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "XVector",
        "BSgenome",
        "UCSC.utils",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Biobase",
        "KEGGREST",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "breakpointR": [
        "GenomicRanges",
        "S4Vectors",
        "GenomeInfoDb",
        "IRanges",
        "Rsamtools",
        "GenomicAlignments",
        "BiocGenerics",
        "UCSC.utils",
        "SummarizedExperiment",
        "Biostrings",
        "BiocParallel",
        "XVector",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "brendaDb": [
        "BiocParallel",
        "BiocFileCache"
    ],
    "BREW3R.r": [
        "GenomicRanges",
        "S4Vectors",
        "BiocGenerics",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "BridgeDbR": [

    ],
    "broadSeq": [
        "SummarizedExperiment",
        "BiocStyle",
        "DELocal",
        "EBSeq",
        "DESeq2",
        "NOISeq",
        "genefilter",
        "clusterProfiler",
        "sechm",
        "edgeR",
        "AnnotationDbi",
        "DOSE",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "limma",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "BiocParallel",
        "MatrixGenerics",
        "annotate",
        "ComplexHeatmap",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "fgsea",
        "ggtree",
        "UCSC.utils",
        "XVector",
        "treeio",
        "Biostrings",
        "zlibbioc"
    ],
    "BrowserViz": [
        "BiocGenerics"
    ],
    "BSgenome": [
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "Biostrings",
        "BiocIO",
        "rtracklayer",
        "XVector",
        "Rsamtools",
        "UCSC.utils",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "SummarizedExperiment",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "BSgenomeForge": [
        "BiocGenerics",
        "IRanges",
        "GenomeInfoDb",
        "Biostrings",
        "BSgenome",
        "Biobase",
        "S4Vectors",
        "GenomicRanges",
        "BiocIO",
        "rtracklayer",
        "XVector",
        "Rsamtools",
        "UCSC.utils",
        "zlibbioc",
        "GenomicAlignments",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "bsseq": [
        "BiocGenerics",
        "GenomicRanges",
        "SummarizedExperiment",
        "IRanges",
        "GenomeInfoDb",
        "Biobase",
        "S4Vectors",
        "DelayedMatrixStats",
        "limma",
        "DelayedArray",
        "BiocParallel",
        "BSgenome",
        "Biostrings",
        "HDF5Array",
        "rhdf5",
        "beachmat",
        "SparseArray",
        "assorthead",
        "XVector",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "MatrixGenerics",
        "S4Arrays",
        "sparseMatrixStats",
        "UCSC.utils",
        "rhdf5filters",
        "Rhdf5lib",
        "zlibbioc",
        "Rhtslib",
        "GenomicAlignments"
    ],
    "BubbleTree": [
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "BiocStyle",
        "Biobase",
        "limma",
        "biovizBase",
        "S4Vectors",
        "GenomeInfoDb",
        "SummarizedExperiment",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "GenomicFeatures",
        "AnnotationDbi",
        "VariantAnnotation",
        "ensembldb",
        "AnnotationFilter",
        "XVector",
        "KEGGREST",
        "rtracklayer",
        "ProtGenerics",
        "UCSC.utils",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "BSgenome",
        "BiocIO",
        "SparseArray"
    ],
    "BufferedMatrix": [

    ],
    "BufferedMatrixMethods": [
        "BufferedMatrix"
    ],
    "bugsigdbr": [
        "BiocFileCache"
    ],
    "BUMHMM": [
        "SummarizedExperiment",
        "Biostrings",
        "IRanges",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "bumphunter": [
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "limma",
        "BiocGenerics",
        "GenomicFeatures",
        "AnnotationDbi",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "BumpyMatrix": [
        "S4Vectors",
        "IRanges",
        "BiocGenerics"
    ],
    "BUS": [
        "minet"
    ],
    "BUScorrect": [
        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "BUSpaRse": [
        "AnnotationDbi",
        "AnnotationFilter",
        "biomaRt",
        "BiocGenerics",
        "Biostrings",
        "BSgenome",
        "ensembldb",
        "GenomeInfoDb",
        "GenomicFeatures",
        "GenomicRanges",
        "IRanges",
        "plyranges",
        "S4Vectors",
        "Biobase",
        "KEGGREST",
        "BiocFileCache",
        "XVector",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "ProtGenerics",
        "UCSC.utils",
        "GenomicAlignments",
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        "impute",
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        "BiocGenerics",
        "BiocParallel",
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        "RBGL",
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        "SummarizedExperiment",
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        "MetaboCoreUtils",
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        "PSMatch",
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        "impute",
        "pcaMethods",
        "mzID",
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        "MatrixGenerics",
        "GenomicRanges",
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        "UCSC.utils",
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        "AnnotationFilter",
        "limma",
        "BiocBaseUtils"
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        "GenomeInfoDb",
        "BiocParallel",
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        "ggtree",
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        "treeio"
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        "geNetClassifier",
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        "SparseArray",
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        "GenomicAlignments",
        "BiocIO",
        "BiocParallel",
        "Rhtslib"
    ],
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        "BiocGenerics"
    ],
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        "GenomicRanges",
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        "snpStats",
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        "VariantAnnotation",
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        "SparseArray"
    ],
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        "BiocParallel",
        "BiocGenerics",
        "ProtGenerics",
        "S4Vectors",
        "CardinalIO",
        "Biobase",
        "EBImage",
        "matter"
    ],
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        "BiocParallel",
        "matter",
        "S4Vectors",
        "BiocGenerics",
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    ],
    "CARNIVAL": [

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        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "EBarrays",
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        "Rsamtools",
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        "KEGGREST",
        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "CATALYST": [
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        "ComplexHeatmap",
        "ConsensusClusterPlus",
        "flowCore",
        "FlowSOM",
        "SummarizedExperiment",
        "S4Vectors",
        "scater",
        "IRanges",
        "Biobase",
        "BiocGenerics",
        "cytolib",
        "RProtoBufLib",
        "scuttle",
        "MatrixGenerics",
        "SparseArray",
        "DelayedArray",
        "beachmat",
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        "BiocSingular",
        "BiocParallel",
        "GenomicRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "assorthead",
        "ScaledMatrix",
        "Rhdf5lib",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "AnnotationDbi",
        "Biobase",
        "graph",
        "RBGL",
        "GSEABase",
        "genefilter",
        "annotate",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "MatrixGenerics",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "BiocGenerics",
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        "GSEABase",
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        "GOstats",
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        "RCy3",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
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        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "S4Vectors",
        "SingleCellExperiment",
        "SpatialExperiment",
        "SummarizedExperiment",
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        "GenomicRanges",
        "DelayedArray",
        "BiocFileCache",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "CausalR": [

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    "cbaf": [
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        "cBioPortalData",
        "genefilter",
        "AnVIL",
        "MultiAssayExperiment",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "RaggedExperiment",
        "RTCGAToolbox",
        "S4Vectors",
        "SummarizedExperiment",
        "TCGAutils",
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        "annotate",
        "Biobase",
        "BiocGenerics",
        "KEGGREST",
        "AnVILBase",
        "BiocBaseUtils",
        "UCSC.utils",
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        "S4Arrays",
        "GenomicFeatures",
        "GenomicDataCommons",
        "SparseArray",
        "Biostrings",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "BiocParallel",
        "Rhtslib"
    ],
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        "BiocSet",
        "SummarizedExperiment",
        "TreeSummarizedExperiment",
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        "KEGGREST",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "IRanges",
        "GenomeInfoDb",
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        "SingleCellExperiment",
        "Biostrings",
        "treeio",
        "XVector",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "AnVIL",
        "MultiAssayExperiment",
        "BiocFileCache",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "RaggedExperiment",
        "RTCGAToolbox",
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        "SummarizedExperiment",
        "TCGAutils",
        "AnVILBase",
        "BiocBaseUtils",
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        "UCSC.utils",
        "XVector",
        "Biobase",
        "DelayedArray",
        "MatrixGenerics",
        "S4Arrays",
        "AnnotationDbi",
        "GenomicFeatures",
        "GenomicDataCommons",
        "KEGGREST",
        "SparseArray",
        "Biostrings",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "BiocParallel",
        "Rhtslib"
    ],
    "CBNplot": [
        "graphite",
        "clusterProfiler",
        "enrichplot",
        "ExperimentHub",
        "BiocFileCache",
        "AnnotationDbi",
        "DOSE",
        "GOSemSim",
        "qvalue",
        "AnnotationHub",
        "ggtree",
        "BiocGenerics",
        "S4Vectors",
        "graph",
        "Biobase",
        "IRanges",
        "KEGGREST",
        "BiocVersion",
        "BiocParallel",
        "fgsea",
        "treeio",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "cbpManager": [
        "basilisk",
        "dir.expiry",
        "basilisk.utils"
    ],
    "ccfindR": [
        "S4Vectors",
        "SummarizedExperiment",
        "SingleCellExperiment",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "ccImpute": [
        "sparseMatrixStats",
        "BiocParallel",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "ccmap": [
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "CCPlotR": [
        "ComplexHeatmap",
        "IRanges",
        "BiocGenerics",
        "S4Vectors"
    ],
    "CCPROMISE": [
        "PROMISE",
        "Biobase",
        "GSEABase",
        "BiocGenerics",
        "annotate",
        "graph",
        "AnnotationDbi",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ccrepe": [

    ],
    "CDI": [
        "BiocParallel",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "celaref": [
        "SummarizedExperiment",
        "MAST",
        "BiocGenerics",
        "S4Vectors",
        "DelayedArray",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "SingleCellExperiment",
        "Biobase",
        "GenomicRanges",
        "GenomeInfoDb",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "celda": [
        "SingleCellExperiment",
        "S4Vectors",
        "SummarizedExperiment",
        "scater",
        "scran",
        "DelayedArray",
        "ComplexHeatmap",
        "IRanges",
        "BiocGenerics",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "scuttle",
        "beachmat",
        "BiocNeighbors",
        "BiocSingular",
        "BiocParallel",
        "edgeR",
        "limma",
        "bluster",
        "metapod",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "assorthead",
        "ScaledMatrix",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "CellBarcode": [
        "ShortRead",
        "Biostrings",
        "S4Vectors",
        "zlibbioc",
        "Rsamtools",
        "BiocGenerics",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "GenomicRanges",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "Biobase",
        "pwalign",
        "UCSC.utils",
        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "cellbaseR": [
        "Rsamtools",
        "BiocParallel",
        "GenomeInfoDb",
        "GenomicRanges",
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "zlibbioc",
        "Rhtslib",
        "UCSC.utils"
    ],
    "CellBench": [
        "SingleCellExperiment",
        "BiocGenerics",
        "BiocFileCache",
        "BiocParallel",
        "SummarizedExperiment",
        "S4Vectors",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "Biobase",
        "UCSC.utils",
        "zlibbioc"
    ],
    "CelliD": [
        "SingleCellExperiment",
        "scater",
        "BiocParallel",
        "SummarizedExperiment",
        "fgsea",
        "scuttle",
        "BiocGenerics",
        "S4Vectors",
        "MatrixGenerics",
        "SparseArray",
        "DelayedArray",
        "beachmat",
        "BiocNeighbors",
        "BiocSingular",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "assorthead",
        "ScaledMatrix",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "cellity": [
        "AnnotationDbi",
        "topGO",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "graph",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "CellMapper": [
        "S4Vectors",
        "BiocGenerics"
    ],
    "cellmigRation": [

    ],
    "CellMixS": [
        "BiocNeighbors",
        "scater",
        "SummarizedExperiment",
        "SingleCellExperiment",
        "BiocParallel",
        "BiocGenerics",
        "assorthead",
        "scuttle",
        "S4Vectors",
        "MatrixGenerics",
        "SparseArray",
        "DelayedArray",
        "beachmat",
        "BiocSingular",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "ScaledMatrix",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "CellNOptR": [
        "RBGL",
        "graph",
        "Rgraphviz",
        "BiocGenerics"
    ],
    "cellscape": [

    ],
    "CellScore": [
        "Biobase",
        "SummarizedExperiment",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "CellTrails": [
        "SingleCellExperiment",
        "BiocGenerics",
        "Biobase",
        "SummarizedExperiment",
        "S4Vectors",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "cellxgenedp": [

    ],
    "CEMiTool": [
        "clusterProfiler",
        "fgsea",
        "AnnotationDbi",
        "DOSE",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "BiocParallel",
        "impute",
        "preprocessCore",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "ggtree",
        "treeio",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "censcyt": [
        "diffcyt",
        "BiocParallel",
        "edgeR",
        "S4Vectors",
        "SummarizedExperiment",
        "flowCore",
        "FlowSOM",
        "limma",
        "ComplexHeatmap",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "cytolib",
        "RProtoBufLib",
        "ConsensusClusterPlus",
        "UCSC.utils",
        "XVector",
        "Rhdf5lib",
        "zlibbioc"
    ],
    "Cepo": [
        "GSEABase",
        "DelayedMatrixStats",
        "DelayedArray",
        "HDF5Array",
        "S4Vectors",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "BiocParallel",
        "BiocGenerics",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "Biobase",
        "annotate",
        "graph",
        "AnnotationDbi",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "GenomicRanges",
        "GenomeInfoDb",
        "KEGGREST",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "ceRNAnetsim": [

    ],
    "CeTF": [
        "ComplexHeatmap",
        "clusterProfiler",
        "DESeq2",
        "RCy3",
        "SummarizedExperiment",
        "S4Vectors",
        "AnnotationDbi",
        "DOSE",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "BiocParallel",
        "MatrixGenerics",
        "snpStats",
        "graph",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "fgsea",
        "ggtree",
        "UCSC.utils",
        "XVector",
        "zlibbioc",
        "treeio",
        "Biostrings"
    ],
    "CexoR": [
        "S4Vectors",
        "IRanges",
        "Rsamtools",
        "GenomeInfoDb",
        "GenomicRanges",
        "rtracklayer",
        "genomation",
        "Biostrings",
        "BSgenome",
        "GenomicAlignments",
        "impute",
        "seqPattern",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "BiocIO",
        "SummarizedExperiment",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "CFAssay": [

    ],
    "cfdnakit": [
        "Biobase",
        "GenomicRanges",
        "GenomeInfoDb",
        "IRanges",
        "QDNAseq",
        "Rsamtools",
        "S4Vectors",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "aroma.light",
        "DNAcopy",
        "CGHbase",
        "CGHcall",
        "Biostrings",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "marray",
        "impute",
        "limma"
    ],
    "cfDNAPro": [
        "GenomicAlignments",
        "IRanges",
        "plyranges",
        "GenomeInfoDb",
        "GenomicRanges",
        "BiocGenerics",
        "Rsamtools",
        "BSgenome",
        "S4Vectors",
        "UCSC.utils",
        "SummarizedExperiment",
        "Biostrings",
        "BiocParallel",
        "XVector",
        "rtracklayer",
        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "cfTools": [
        "GenomicRanges",
        "basilisk",
        "dir.expiry",
        "basilisk.utils",
        "ExperimentHub",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "AnnotationHub",
        "BiocFileCache",
        "UCSC.utils",
        "zlibbioc",
        "BiocVersion",
        "AnnotationDbi",
        "Biobase",
        "KEGGREST",
        "Biostrings"
    ],
    "CGEN": [

    ],
    "CGHbase": [
        "Biobase",
        "marray",
        "BiocGenerics",
        "limma"
    ],
    "CGHcall": [
        "impute",
        "DNAcopy",
        "Biobase",
        "CGHbase",
        "BiocGenerics",
        "marray",
        "limma"
    ],
    "cghMCR": [
        "DNAcopy",
        "CNTools",
        "limma",
        "BiocGenerics",
        "genefilter",
        "MatrixGenerics",
        "AnnotationDbi",
        "annotate",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "CGHnormaliter": [
        "CGHcall",
        "CGHbase",
        "Biobase",
        "BiocGenerics",
        "marray",
        "impute",
        "DNAcopy",
        "limma"
    ],
    "CGHregions": [
        "Biobase",
        "CGHbase",
        "BiocGenerics",
        "marray",
        "limma"
    ],
    "ChAMP": [
        "minfi",
        "DMRcate",
        "globaltest",
        "sva",
        "illuminaio",
        "limma",
        "DNAcopy",
        "preprocessCore",
        "impute",
        "marray",
        "wateRmelon",
        "goseq",
        "missMethyl",
        "GenomicRanges",
        "qvalue",
        "bumphunter",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "BiocGenerics",
        "GenomicFeatures",
        "AnnotationDbi",
        "AnnotationHub",
        "ExperimentHub",
        "bsseq",
        "edgeR",
        "Gviz",
        "SummarizedExperiment",
        "biomaRt",
        "XVector",
        "Biobase",
        "annotate",
        "rtracklayer",
        "Biostrings",
        "siggenes",
        "DelayedMatrixStats",
        "genefilter",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "methylumi",
        "lumi",
        "ROC",
        "KEGGREST",
        "BiocFileCache",
        "BiocVersion",
        "BSgenome",
        "rhdf5",
        "beachmat",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "txdbmaker",
        "UCSC.utils",
        "ensembldb",
        "biovizBase",
        "Rsamtools",
        "GenomicAlignments",
        "rhdf5filters",
        "Rhdf5lib",
        "affy",
        "zlibbioc",
        "BiocIO",
        "multtest",
        "affyio",
        "assorthead",
        "VariantAnnotation",
        "AnnotationFilter",
        "ProtGenerics",
        "Rhtslib"
    ],
    "ChemmineOB": [
        "BiocGenerics",
        "zlibbioc"
    ],
    "ChemmineR": [
        "BiocGenerics"
    ],
    "CHETAH": [
        "SingleCellExperiment",
        "bioDist",
        "S4Vectors",
        "SummarizedExperiment",
        "Biobase",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "Chicago": [

    ],
    "chihaya": [
        "DelayedArray",
        "rhdf5",
        "HDF5Array",
        "Rhdf5lib",
        "BiocGenerics",
        "MatrixGenerics",
        "S4Vectors",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "rhdf5filters",
        "XVector",
        "zlibbioc"
    ],
    "chimeraviz": [
        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "Gviz",
        "S4Vectors",
        "ensembldb",
        "AnnotationFilter",
        "Rsamtools",
        "GenomeInfoDb",
        "GenomicAlignments",
        "AnnotationDbi",
        "graph",
        "Rgraphviz",
        "BiocStyle",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "XVector",
        "GenomicFeatures",
        "rtracklayer",
        "ProtGenerics",
        "UCSC.utils",
        "SummarizedExperiment",
        "BiocParallel",
        "biomaRt",
        "BSgenome",
        "biovizBase",
        "zlibbioc",
        "Rhtslib",
        "BiocFileCache",
        "VariantAnnotation",
        "BiocIO",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "ChIPanalyser": [
        "GenomicRanges",
        "Biostrings",
        "BSgenome",
        "IRanges",
        "S4Vectors",
        "rtracklayer",
        "GenomeInfoDb",
        "BiocGenerics",
        "XVector",
        "BiocIO",
        "Rsamtools",
        "UCSC.utils",
        "zlibbioc",
        "GenomicAlignments",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "ChIPComp": [
        "GenomicRanges",
        "IRanges",
        "rtracklayer",
        "GenomeInfoDb",
        "S4Vectors",
        "Rsamtools",
        "limma",
        "BiocGenerics",
        "BSgenome",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "chipenrich": [
        "AnnotationDbi",
        "BiocGenerics",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "rtracklayer",
        "S4Vectors",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "ChIPexoQual": [
        "GenomicAlignments",
        "GenomeInfoDb",
        "BiocParallel",
        "GenomicRanges",
        "Rsamtools",
        "IRanges",
        "S4Vectors",
        "biovizBase",
        "BiocGenerics",
        "SummarizedExperiment",
        "Biostrings",
        "GenomicFeatures",
        "AnnotationDbi",
        "VariantAnnotation",
        "ensembldb",
        "AnnotationFilter",
        "UCSC.utils",
        "XVector",
        "zlibbioc",
        "Rhtslib",
        "Biobase",
        "KEGGREST",
        "rtracklayer",
        "ProtGenerics",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "BSgenome",
        "BiocIO",
        "SparseArray"
    ],
    "ChIPpeakAnno": [
        "IRanges",
        "GenomicRanges",
        "S4Vectors",
        "AnnotationDbi",
        "BiocGenerics",
        "Biostrings",
        "pwalign",
        "GenomeInfoDb",
        "GenomicAlignments",
        "GenomicFeatures",
        "RBGL",
        "Rsamtools",
        "SummarizedExperiment",
        "biomaRt",
        "graph",
        "InteractionSet",
        "KEGGREST",
        "multtest",
        "regioneR",
        "rtracklayer",
        "universalmotif",
        "ensembldb",
        "Biobase",
        "BiocFileCache",
        "XVector",
        "AnnotationFilter",
        "ProtGenerics",
        "UCSC.utils",
        "BiocParallel",
        "BSgenome",
        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "ChIPQC": [
        "DiffBind",
        "GenomicRanges",
        "BiocParallel",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "Rsamtools",
        "GenomicAlignments",
        "chipseq",
        "Biobase",
        "GenomicFeatures",
        "ShortRead",
        "SummarizedExperiment",
        "limma",
        "systemPipeR",
        "DESeq2",
        "apeglm",
        "GreyListChIP",
        "Rhtslib",
        "GenomeInfoDb",
        "Biostrings",
        "AnnotationDbi",
        "XVector",
        "rtracklayer",
        "zlibbioc",
        "KEGGREST",
        "MatrixGenerics",
        "UCSC.utils",
        "BSgenome",
        "BiocIO",
        "pwalign",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "ChIPseeker": [
        "AnnotationDbi",
        "BiocGenerics",
        "enrichplot",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "GenomicFeatures",
        "rtracklayer",
        "S4Vectors",
        "Biobase",
        "KEGGREST",
        "DOSE",
        "GOSemSim",
        "ggtree",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "BiocParallel",
        "fgsea",
        "qvalue",
        "SummarizedExperiment",
        "treeio",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "chipseq": [
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "ShortRead",
        "GenomeInfoDb",
        "XVector",
        "BiocParallel",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "Biobase",
        "pwalign",
        "Rhtslib",
        "UCSC.utils",
        "SummarizedExperiment",
        "zlibbioc",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "ChIPseqR": [
        "BiocGenerics",
        "S4Vectors",
        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "HilbertVis",
        "ShortRead",
        "XVector",
        "GenomeInfoDb",
        "BiocParallel",
        "Rsamtools",
        "GenomicAlignments",
        "Biobase",
        "pwalign",
        "Rhtslib",
        "UCSC.utils",
        "SummarizedExperiment",
        "zlibbioc",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "ChIPsim": [
        "Biostrings",
        "IRanges",
        "XVector",
        "ShortRead",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "BiocParallel",
        "Rsamtools",
        "GenomicAlignments",
        "Biobase",
        "GenomicRanges",
        "pwalign",
        "Rhtslib",
        "zlibbioc",
        "UCSC.utils",
        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "ChIPXpress": [
        "Biobase",
        "GEOquery",
        "frma",
        "affy",
        "BiocGenerics",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "oligo",
        "oligoClasses",
        "limma",
        "SummarizedExperiment",
        "S4Vectors",
        "Biostrings",
        "affxparser",
        "IRanges",
        "GenomicRanges",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "XVector",
        "SparseArray",
        "UCSC.utils"
    ],
    "chopsticks": [

    ],
    "chromDraw": [
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ChromHeatMap": [
        "BiocGenerics",
        "annotate",
        "AnnotationDbi",
        "Biobase",
        "IRanges",
        "rtracklayer",
        "GenomicRanges",
        "S4Vectors",
        "KEGGREST",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "UCSC.utils",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "chromPlot": [
        "biomaRt",
        "GenomicRanges",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "zlibbioc",
        "Biostrings"
    ],
    "ChromSCape": [
        "rtracklayer",
        "batchelor",
        "BiocParallel",
        "Rsamtools",
        "scran",
        "scater",
        "ConsensusClusterPlus",
        "GenomicRanges",
        "IRanges",
        "edgeR",
        "S4Vectors",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "DelayedArray",
        "BiocGenerics",
        "BiocNeighbors",
        "BiocSingular",
        "SparseArray",
        "DelayedMatrixStats",
        "scuttle",
        "ResidualMatrix",
        "ScaledMatrix",
        "beachmat",
        "Biobase",
        "MatrixGenerics",
        "S4Arrays",
        "limma",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rhtslib",
        "GenomicAlignments",
        "BiocIO",
        "bluster",
        "metapod",
        "assorthead",
        "sparseMatrixStats",
        "UCSC.utils"
    ],
    "chromstaR": [
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "IRanges",
        "Rsamtools",
        "GenomicAlignments",
        "bamsignals",
        "zlibbioc",
        "Rhtslib",
        "UCSC.utils",
        "SummarizedExperiment",
        "Biostrings",
        "BiocParallel",
        "XVector",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "chromVAR": [
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "BiocParallel",
        "BiocGenerics",
        "Biostrings",
        "TFBSTools",
        "Rsamtools",
        "S4Vectors",
        "SummarizedExperiment",
        "BSgenome",
        "XVector",
        "BiocIO",
        "rtracklayer",
        "UCSC.utils",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "pwalign",
        "CNEr",
        "DirichletMultinomial",
        "seqLogo",
        "GenomicAlignments",
        "annotate",
        "KEGGREST",
        "SparseArray",
        "AnnotationDbi"
    ],
    "CHRONOS": [
        "RBGL",
        "graph",
        "biomaRt",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "cicero": [
        "monocle",
        "Gviz",
        "Biobase",
        "BiocGenerics",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "GenomeInfoDb",
        "XVector",
        "rtracklayer",
        "biomaRt",
        "AnnotationDbi",
        "GenomicFeatures",
        "ensembldb",
        "BSgenome",
        "Biostrings",
        "biovizBase",
        "Rsamtools",
        "GenomicAlignments",
        "limma",
        "biocViews",
        "KEGGREST",
        "graph",
        "RBGL",
        "BiocFileCache",
        "SummarizedExperiment",
        "VariantAnnotation",
        "AnnotationFilter",
        "BiocIO",
        "ProtGenerics",
        "UCSC.utils",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "CIMICE": [
        "maftools",
        "Rhtslib",
        "DNAcopy",
        "zlibbioc"
    ],
    "CINdex": [
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "circRNAprofiler": [
        "rtracklayer",
        "DESeq2",
        "edgeR",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "GenomeInfoDb",
        "universalmotif",
        "AnnotationHub",
        "Biostrings",
        "gwascat",
        "BSgenome",
        "BiocGenerics",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "XVector",
        "BiocIO",
        "Rsamtools",
        "SummarizedExperiment",
        "Biobase",
        "BiocParallel",
        "MatrixGenerics",
        "limma",
        "UCSC.utils",
        "GenomicFeatures",
        "snpStats",
        "VariantAnnotation",
        "zlibbioc",
        "GenomicAlignments",
        "KEGGREST",
        "Rhtslib",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "CircSeqAlignTk": [
        "S4Vectors",
        "BiocGenerics",
        "Biostrings",
        "IRanges",
        "ShortRead",
        "Rsamtools",
        "Rbowtie2",
        "Rhisat2",
        "XVector",
        "GenomeInfoDb",
        "txdbmaker",
        "SGSeq",
        "GenomicRanges",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "Biobase",
        "pwalign",
        "UCSC.utils",
        "SummarizedExperiment",
        "AnnotationDbi",
        "GenomicFeatures",
        "rtracklayer",
        "BiocIO",
        "biomaRt",
        "KEGGREST",
        "BiocFileCache",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "cisPath": [

    ],
    "CiteFuse": [
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "scran",
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        "rhdf5filters",
        "BiocGenerics",
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        "GenomeInfoDb",
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        "assorthead",
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        "BiocNeighbors",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "MultiAssayExperiment",
        "BiocParallel",
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        "annotate",
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        "DelayedArray",
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        "KEGGREST",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "Biostrings",
        "zlibbioc"
    ],
    "cleanUpdTSeq": [
        "BSgenome",
        "GenomicRanges",
        "Biostrings",
        "GenomeInfoDb",
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        "S4Vectors",
        "BiocGenerics",
        "XVector",
        "BiocIO",
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        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "CleanUpRNAseq": [
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        "Biostrings",
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        "DESeq2",
        "edgeR",
        "ensembldb",
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        "GenomicRanges",
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        "Rsubread",
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        "tximport",
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        "BiocIO",
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        "GenomicFeatures",
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        "zlibbioc",
        "Rhtslib",
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        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "GenomicAlignments",
        "genefilter",
        "annotate"
    ],
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        "S4Vectors",
        "IRanges",
        "BiocGenerics",
        "XVector",
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        "UCSC.utils",
        "zlibbioc"
    ],
    "clevRvis": [

    ],
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        "limma",
        "Biobase",
        "BiocGenerics"
    ],
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        "Biobase",
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        "KEGGgraph",
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        "S4Vectors",
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        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
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        "KEGGREST",
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        "rtracklayer",
        "zlibbioc",
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        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "cliProfiler": [
        "S4Vectors",
        "rtracklayer",
        "GenomicRanges",
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        "BiocGenerics",
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        "XVector",
        "GenomeInfoDb",
        "BiocIO",
        "Rsamtools",
        "zlibbioc",
        "GenomicAlignments",
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        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
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        "DelayedArray",
        "SparseArray"
    ],
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        "MsCoreUtils",
        "PSMatch",
        "BiocParallel",
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        "vsn",
        "affy",
        "impute",
        "pcaMethods",
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        "SummarizedExperiment",
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        "MsExperiment",
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        "MetaboCoreUtils",
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        "preprocessCore",
        "zlibbioc",
        "QFeatures",
        "Rhdf5lib",
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        "GenomicRanges",
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        "S4Arrays",
        "DelayedArray",
        "limma",
        "SparseArray",
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        "BiocBaseUtils"
    ],
    "Clomial": [

    ],
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        "ROC"
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        "S4Vectors",
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        "MSnbase",
        "BiocGenerics",
        "ProtGenerics",
        "MsCoreUtils",
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        "BiocParallel",
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        "vsn",
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        "impute",
        "pcaMethods",
        "mzID",
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        "affyio",
        "preprocessCore",
        "zlibbioc",
        "QFeatures",
        "limma",
        "MultiAssayExperiment",
        "SummarizedExperiment",
        "AnnotationFilter",
        "GenomicRanges",
        "BiocBaseUtils",
        "DelayedArray",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector"
    ],
    "ClustAll": [
        "ComplexHeatmap",
        "IRanges",
        "BiocGenerics",
        "S4Vectors"
    ],
    "clustComp": [

    ],
    "clusterExperiment": [
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        "SummarizedExperiment",
        "BiocGenerics",
        "limma",
        "BiocSingular",
        "S4Vectors",
        "DelayedArray",
        "HDF5Array",
        "edgeR",
        "zinbwave",
        "mbkmeans",
        "BiocParallel",
        "ScaledMatrix",
        "beachmat",
        "assorthead",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "Biobase",
        "GenomicRanges",
        "GenomeInfoDb",
        "genefilter",
        "AnnotationDbi",
        "annotate",
        "UCSC.utils",
        "XVector",
        "KEGGREST",
        "zlibbioc",
        "Biostrings"
    ],
    "ClusterFoldSimilarity": [
        "BiocParallel",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "Biobase",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ClusterJudge": [

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    "clusterProfiler": [
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        "DOSE",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocParallel",
        "fgsea",
        "ggtree",
        "treeio",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "clusterSeq": [
        "BiocParallel",
        "baySeq",
        "BiocGenerics",
        "edgeR",
        "GenomicRanges",
        "limma",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ClusterSignificance": [

    ],
    "clusterStab": [
        "Biobase",
        "BiocGenerics"
    ],
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        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocParallel",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
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        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "pwalign",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "zlibbioc",
        "UCSC.utils"
    ],
    "CMA": [
        "Biobase",
        "BiocGenerics"
    ],
    "cmapR": [
        "rhdf5",
        "flowCore",
        "SummarizedExperiment",
        "Biobase",
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        "cytolib",
        "S4Vectors",
        "RProtoBufLib",
        "Rhdf5lib",
        "rhdf5filters",
        "MatrixGenerics",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "Biobase",
        "oligoClasses",
        "affxparser",
        "oligo",
        "DNAcopy",
        "preprocessCore",
        "BiocGenerics",
        "Biostrings",
        "affyio",
        "zlibbioc",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils"
    ],
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        "BiocGenerics",
        "Biobase",
        "IRanges",
        "Rsamtools",
        "GenomeInfoDb",
        "S4Vectors",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib"
    ],
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        "DNAcopy"
    ],
    "CNEr": [
        "Biostrings",
        "pwalign",
        "GenomeInfoDb",
        "GenomicRanges",
        "rtracklayer",
        "XVector",
        "GenomicAlignments",
        "S4Vectors",
        "IRanges",
        "BiocGenerics",
        "annotate",
        "KEGGREST",
        "AnnotationDbi",
        "Biobase",
        "UCSC.utils",
        "SummarizedExperiment",
        "Rsamtools",
        "BiocParallel",
        "zlibbioc",
        "BiocIO",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "CNORdt": [
        "CellNOptR",
        "RBGL",
        "graph",
        "Rgraphviz",
        "BiocGenerics"
    ],
    "CNORfeeder": [
        "CellNOptR",
        "graph",
        "RBGL",
        "Rgraphviz",
        "BiocGenerics"
    ],
    "CNORfuzzy": [
        "CellNOptR",
        "RBGL",
        "graph",
        "Rgraphviz",
        "BiocGenerics"
    ],
    "CNORode": [
        "CellNOptR",
        "RBGL",
        "graph",
        "Rgraphviz",
        "BiocGenerics"
    ],
    "CNTools": [
        "genefilter",
        "MatrixGenerics",
        "AnnotationDbi",
        "annotate",
        "Biobase",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "CNVfilteR": [
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "regioneR",
        "karyoploteR",
        "CopyNumberPlots",
        "VariantAnnotation",
        "Rsamtools",
        "GenomeInfoDb",
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "cn.mops",
        "rhdf5",
        "UCSC.utils",
        "rtracklayer",
        "biovizBase",
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        "AnnotationDbi",
        "BSgenome",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "GenomicAlignments",
        "ensembldb",
        "AnnotationFilter",
        "BiocIO",
        "SparseArray",
        "Rhdf5lib",
        "rhdf5filters",
        "ProtGenerics"
    ],
    "cnvGSA": [
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "CNViz": [
        "karyoploteR",
        "CopyNumberPlots",
        "GenomicRanges",
        "regioneR",
        "IRanges",
        "Rsamtools",
        "SummarizedExperiment",
        "VariantAnnotation",
        "GenomeInfoDb",
        "cn.mops",
        "rhdf5",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "rtracklayer",
        "biovizBase",
        "GenomicFeatures",
        "bamsignals",
        "AnnotationDbi",
        "Biobase",
        "KEGGREST",
        "zlibbioc",
        "Rhtslib",
        "Biostrings",
        "GenomicAlignments",
        "ensembldb",
        "AnnotationFilter",
        "UCSC.utils",
        "BSgenome",
        "Rhdf5lib",
        "rhdf5filters",
        "BiocParallel",
        "BiocIO",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "ProtGenerics"
    ],
    "CNVMetrics": [
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "BiocParallel",
        "BiocGenerics",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "CNVPanelizer": [
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "NOISeq",
        "IRanges",
        "Rsamtools",
        "GenomeInfoDb",
        "UCSC.utils",
        "XVector",
        "Biobase",
        "Biostrings",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib"
    ],
    "CNVRanger": [
        "GenomicRanges",
        "RaggedExperiment",
        "BiocGenerics",
        "BiocParallel",
        "GDSArray",
        "GenomeInfoDb",
        "IRanges",
        "S4Vectors",
        "SNPRelate",
        "SummarizedExperiment",
        "edgeR",
        "gdsfmt",
        "limma",
        "DelayedArray",
        "SeqArray",
        "UCSC.utils",
        "XVector",
        "BiocBaseUtils",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "SparseArray",
        "Biostrings",
        "zlibbioc"
    ],
    "CNVrd2": [
        "VariantAnnotation",
        "DNAcopy",
        "IRanges",
        "Rsamtools",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "GenomicRanges",
        "Biostrings",
        "XVector",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "SummarizedExperiment",
        "Biobase",
        "AnnotationDbi",
        "rtracklayer",
        "BSgenome",
        "GenomicFeatures",
        "KEGGREST",
        "BiocIO",
        "UCSC.utils",
        "GenomicAlignments",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "CoCiteStats": [
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "COCOA": [
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "Biobase",
        "ComplexHeatmap",
        "MIRA",
        "GenomeInfoDb",
        "XVector",
        "bsseq",
        "SummarizedExperiment",
        "DelayedMatrixStats",
        "limma",
        "DelayedArray",
        "BiocParallel",
        "BSgenome",
        "Biostrings",
        "HDF5Array",
        "rhdf5",
        "beachmat",
        "UCSC.utils",
        "zlibbioc",
        "SparseArray",
        "assorthead",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "MatrixGenerics",
        "S4Arrays",
        "sparseMatrixStats",
        "rhdf5filters",
        "Rhdf5lib",
        "Rhtslib",
        "GenomicAlignments"
    ],
    "codelink": [
        "BiocGenerics",
        "Biobase",
        "limma",
        "annotate",
        "AnnotationDbi",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "CODEX": [
        "Rsamtools",
        "GenomeInfoDb",
        "IRanges",
        "Biostrings",
        "S4Vectors",
        "BiocGenerics",
        "XVector",
        "BSgenome",
        "UCSC.utils",
        "GenomicRanges",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "BiocIO",
        "rtracklayer",
        "GenomicAlignments",
        "SummarizedExperiment",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "CoGAPS": [
        "BiocParallel",
        "S4Vectors",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "rhdf5",
        "fgsea",
        "Rhdf5lib",
        "rhdf5filters",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "cogena": [
        "Biobase",
        "BiocGenerics"
    ],
    "cogeqc": [
        "ggtree",
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "treeio",
        "UCSC.utils",
        "zlibbioc"
    ],
    "Cogito": [
        "GenomicRanges",
        "GenomicFeatures",
        "GenomeInfoDb",
        "S4Vectors",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "KEGGREST",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "coGPS": [

    ],
    "cola": [
        "ComplexHeatmap",
        "impute",
        "BiocGenerics",
        "IRanges",
        "S4Vectors"
    ],
    "comapr": [
        "GenomicRanges",
        "IRanges",
        "BiocParallel",
        "GenomeInfoDb",
        "S4Vectors",
        "SummarizedExperiment",
        "Gviz",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "rtracklayer",
        "biomaRt",
        "AnnotationDbi",
        "Biobase",
        "GenomicFeatures",
        "ensembldb",
        "BSgenome",
        "Biostrings",
        "biovizBase",
        "Rsamtools",
        "GenomicAlignments",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "BiocFileCache",
        "VariantAnnotation",
        "AnnotationFilter",
        "BiocIO",
        "SparseArray",
        "ProtGenerics",
        "zlibbioc",
        "Rhtslib"
    ],
    "combi": [
        "phyloseq",
        "limma",
        "Biobase",
        "SummarizedExperiment",
        "BiocGenerics",
        "biomformat",
        "Biostrings",
        "multtest",
        "MatrixGenerics",
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "rhdf5",
        "XVector",
        "SparseArray",
        "UCSC.utils",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc"
    ],
    "coMethDMR": [
        "AnnotationHub",
        "BiocParallel",
        "bumphunter",
        "ExperimentHub",
        "GenomicRanges",
        "IRanges",
        "BiocGenerics",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "S4Vectors",
        "GenomeInfoDb",
        "limma",
        "GenomicFeatures",
        "XVector",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "Biostrings",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "COMPASS": [
        "BiocStyle"
    ],
    "compcodeR": [
        "edgeR",
        "limma"
    ],
    "compEpiTools": [
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        "GenomicRanges",
        "AnnotationDbi",
        "BiocGenerics",
        "Biostrings",
        "Rsamtools",
        "IRanges",
        "GenomicFeatures",
        "XVector",
        "methylPipe",
        "S4Vectors",
        "GenomeInfoDb",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "rtracklayer",
        "SummarizedExperiment",
        "marray",
        "Gviz",
        "GenomicAlignments",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "graph",
        "biomaRt",
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        "biovizBase",
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        "BiocIO",
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        "S4Arrays",
        "DelayedArray",
        "BiocFileCache",
        "VariantAnnotation",
        "AnnotationFilter",
        "SparseArray",
        "ProtGenerics"
    ],
    "ComplexHeatmap": [
        "IRanges",
        "BiocGenerics",
        "S4Vectors"
    ],
    "CompoundDb": [
        "AnnotationFilter",
        "S4Vectors",
        "BiocGenerics",
        "ChemmineR",
        "Biobase",
        "ProtGenerics",
        "IRanges",
        "Spectra",
        "MsCoreUtils",
        "MetaboCoreUtils",
        "BiocParallel",
        "GenomicRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ComPrAn": [

    ],
    "compSPOT": [

    ],
    "concordexR": [
        "BiocGenerics",
        "BiocNeighbors",
        "BiocParallel",
        "bluster",
        "DelayedArray",
        "SingleCellExperiment",
        "sparseMatrixStats",
        "SpatialExperiment",
        "SummarizedExperiment",
        "assorthead",
        "S4Vectors",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "GenomicRanges",
        "BiocFileCache",
        "Biobase",
        "GenomeInfoDb",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "condiments": [
        "slingshot",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "BiocParallel",
        "TrajectoryUtils",
        "distinct",
        "limma",
        "scater",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "scuttle",
        "beachmat",
        "BiocNeighbors",
        "BiocSingular",
        "assorthead",
        "ScaledMatrix",
        "zlibbioc"
    ],
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        "EBImage",
        "flowCore",
        "flowClust",
        "flowMeans",
        "flowMerge",
        "flowPeaks",
        "limma",
        "SamSPECTRAL",
        "BiocGenerics",
        "Biobase",
        "graph",
        "cytolib",
        "S4Vectors",
        "RProtoBufLib",
        "Rgraphviz",
        "Rhdf5lib"
    ],
    "consensus": [

    ],
    "ConsensusClusterPlus": [
        "Biobase",
        "BiocGenerics"
    ],
    "consensusDE": [
        "BiocGenerics",
        "AnnotationDbi",
        "BiocParallel",
        "Biobase",
        "Biostrings",
        "DESeq2",
        "EDASeq",
        "ensembldb",
        "edgeR",
        "GenomicAlignments",
        "GenomicFeatures",
        "limma",
        "pcaMethods",
        "Rsamtools",
        "RUVSeq",
        "S4Vectors",
        "SummarizedExperiment",
        "IRanges",
        "KEGGREST",
        "XVector",
        "GenomeInfoDb",
        "GenomicRanges",
        "MatrixGenerics",
        "ShortRead",
        "aroma.light",
        "biomaRt",
        "AnnotationFilter",
        "rtracklayer",
        "ProtGenerics",
        "zlibbioc",
        "Rhtslib",
        "S4Arrays",
        "DelayedArray",
        "BiocFileCache",
        "SparseArray",
        "UCSC.utils",
        "BiocIO",
        "pwalign"
    ],
    "consensusSeekeR": [
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        "IRanges",
        "GenomicRanges",
        "BiocParallel",
        "GenomeInfoDb",
        "rtracklayer",
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        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "consICA": [
        "SummarizedExperiment",
        "BiocParallel",
        "graph",
        "topGO",
        "AnnotationDbi",
        "BiocGenerics",
        "MatrixGenerics",
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        "Biobase",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "CONSTANd": [

    ],
    "conumee": [
        "minfi",
        "DNAcopy",
        "rtracklayer",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "BiocGenerics",
        "S4Vectors",
        "UCSC.utils",
        "XVector",
        "SummarizedExperiment",
        "Biostrings",
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        "Biobase",
        "siggenes",
        "limma",
        "preprocessCore",
        "illuminaio",
        "DelayedMatrixStats",
        "genefilter",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "GenomicFeatures",
        "AnnotationDbi",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "annotate",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "Rhtslib",
        "multtest",
        "KEGGREST"
    ],
    "convert": [
        "Biobase",
        "limma",
        "marray",
        "BiocGenerics"
    ],
    "copa": [
        "Biobase",
        "BiocGenerics"
    ],
    "CopyNumberPlots": [
        "karyoploteR",
        "regioneR",
        "IRanges",
        "Rsamtools",
        "SummarizedExperiment",
        "VariantAnnotation",
        "GenomeInfoDb",
        "GenomicRanges",
        "cn.mops",
        "rhdf5",
        "BiocGenerics",
        "Biobase",
        "S4Vectors",
        "UCSC.utils",
        "XVector",
        "rtracklayer",
        "biovizBase",
        "GenomicFeatures",
        "bamsignals",
        "AnnotationDbi",
        "BSgenome",
        "Biostrings",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "GenomicAlignments",
        "ensembldb",
        "AnnotationFilter",
        "BiocIO",
        "SparseArray",
        "ProtGenerics"
    ],
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        "Biostrings",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "CoreGx": [
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        "SummarizedExperiment",
        "Biobase",
        "S4Vectors",
        "MultiAssayExperiment",
        "MatrixGenerics",
        "piano",
        "BiocParallel",
        "BumpyMatrix",
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        "BiocBaseUtils",
        "DelayedArray",
        "GenomicRanges",
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        "fgsea",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "limma",
        "zlibbioc"
    ],
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        "affy",
        "limma",
        "BiocGenerics",
        "Biobase",
        "affyio",
        "preprocessCore",
        "zlibbioc"
    ],
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        "MultiAssayExperiment",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "SummarizedExperiment",
        "S4Vectors",
        "edgeR",
        "DESeq2",
        "BiocParallel",
        "HTSFilter",
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "MatrixGenerics",
        "limma",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "CoSIA": [
        "ExperimentHub",
        "AnnotationDbi",
        "biomaRt",
        "annotationTools",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocFileCache",
        "AnnotationHub",
        "BiocVersion",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "cosmiq": [
        "xcms",
        "MassSpecWavelet",
        "BiocParallel",
        "MSnbase",
        "mzR",
        "Biobase",
        "BiocGenerics",
        "ProtGenerics",
        "S4Vectors",
        "IRanges",
        "SummarizedExperiment",
        "MsCoreUtils",
        "MsFeatures",
        "MsExperiment",
        "Spectra",
        "MetaboCoreUtils",
        "QFeatures",
        "PSMatch",
        "vsn",
        "affy",
        "impute",
        "pcaMethods",
        "mzID",
        "Rhdf5lib",
        "MatrixGenerics",
        "GenomicRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "MultiAssayExperiment",
        "AnnotationFilter",
        "limma",
        "BiocBaseUtils"
    ],
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        "CARNIVAL",
        "GSEABase",
        "decoupleR",
        "BiocParallel",
        "BiocGenerics",
        "Biobase",
        "annotate",
        "graph",
        "AnnotationDbi",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "COSNet": [

    ],
    "COTAN": [
        "BiocSingular",
        "PCAtools",
        "ComplexHeatmap",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "DelayedArray",
        "BiocParallel",
        "ScaledMatrix",
        "beachmat",
        "assorthead",
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        "DelayedMatrixStats",
        "GenomicRanges",
        "MatrixGenerics",
        "Biobase",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "countsimQC": [
        "edgeR",
        "DESeq2",
        "SummarizedExperiment",
        "genefilter",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "BiocParallel",
        "MatrixGenerics",
        "limma",
        "AnnotationDbi",
        "annotate",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "covEB": [
        "Biobase",
        "BiocGenerics"
    ],
    "CoverageView": [
        "Rsamtools",
        "rtracklayer",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "GenomicAlignments",
        "BiocGenerics",
        "GenomeInfoDb",
        "SummarizedExperiment",
        "Biostrings",
        "BiocParallel",
        "XVector",
        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "UCSC.utils",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "covRNA": [
        "Biobase",
        "genefilter",
        "BiocGenerics",
        "MatrixGenerics",
        "AnnotationDbi",
        "annotate",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "cpvSNP": [
        "GenomicFeatures",
        "GSEABase",
        "BiocParallel",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "AnnotationDbi",
        "XVector",
        "Biostrings",
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        "annotate",
        "graph",
        "KEGGREST",
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        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "cqn": [

    ],
    "CRImage": [
        "EBImage",
        "DNAcopy",
        "aCGH",
        "multtest",
        "Biobase",
        "BiocGenerics"
    ],
    "CRISPRball": [
        "ComplexHeatmap",
        "InteractiveComplexHeatmap",
        "dittoSeq",
        "MAGeCKFlute",
        "PCAtools",
        "IRanges",
        "SummarizedExperiment",
        "SingleCellExperiment",
        "S4Vectors",
        "Biobase",
        "DOSE",
        "clusterProfiler",
        "pathview",
        "enrichplot",
        "DelayedMatrixStats",
        "DelayedArray",
        "BiocSingular",
        "BiocParallel",
        "beachmat",
        "SparseArray",
        "BiocGenerics",
        "assorthead",
        "ScaledMatrix",
        "AnnotationDbi",
        "GOSemSim",
        "qvalue",
        "MatrixGenerics",
        "S4Arrays",
        "sparseMatrixStats",
        "ExperimentHub",
        "AnnotationHub",
        "BiocFileCache",
        "fgsea",
        "ggtree",
        "KEGGgraph",
        "Rgraphviz",
        "graph",
        "KEGGREST",
        "GenomicRanges",
        "GenomeInfoDb",
        "BiocVersion",
        "UCSC.utils",
        "XVector",
        "treeio",
        "Biostrings",
        "zlibbioc"
    ],
    "crisprBase": [
        "BiocGenerics",
        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "crisprBowtie": [
        "BiocGenerics",
        "Biostrings",
        "BSgenome",
        "crisprBase",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "Rbowtie",
        "S4Vectors",
        "XVector",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "UCSC.utils",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "SummarizedExperiment",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "crisprBwa": [
        "BiocGenerics",
        "BSgenome",
        "crisprBase",
        "GenomeInfoDb",
        "Rbwa",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "Biostrings",
        "BiocIO",
        "rtracklayer",
        "XVector",
        "Rsamtools",
        "UCSC.utils",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "SummarizedExperiment",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "crisprDesign": [
        "crisprBase",
        "AnnotationDbi",
        "BiocGenerics",
        "Biostrings",
        "BSgenome",
        "crisprBowtie",
        "crisprScore",
        "GenomeInfoDb",
        "GenomicFeatures",
        "GenomicRanges",
        "IRanges",
        "MatrixGenerics",
        "rtracklayer",
        "S4Vectors",
        "txdbmaker",
        "VariantAnnotation",
        "Biobase",
        "KEGGREST",
        "XVector",
        "BiocIO",
        "Rsamtools",
        "Rbowtie",
        "basilisk",
        "basilisk.utils",
        "UCSC.utils",
        "zlibbioc",
        "GenomicAlignments",
        "biomaRt",
        "SummarizedExperiment",
        "Rhtslib",
        "dir.expiry",
        "BiocFileCache",
        "ExperimentHub",
        "AnnotationHub",
        "BiocParallel",
        "S4Arrays",
        "DelayedArray",
        "BiocVersion",
        "SparseArray"
    ],
    "crisprScore": [
        "basilisk",
        "basilisk.utils",
        "BiocGenerics",
        "Biostrings",
        "IRanges",
        "XVector",
        "dir.expiry",
        "S4Vectors",
        "GenomeInfoDb",
        "ExperimentHub",
        "AnnotationHub",
        "zlibbioc",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "UCSC.utils",
        "Biobase",
        "KEGGREST"
    ],
    "CRISPRseek": [
        "BiocGenerics",
        "Biostrings",
        "S4Vectors",
        "IRanges",
        "BSgenome",
        "rhdf5",
        "XVector",
        "DelayedArray",
        "GenomeInfoDb",
        "GenomicRanges",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "SummarizedExperiment",
        "Biobase"
    ],
    "crisprShiny": [
        "BiocGenerics",
        "Biostrings",
        "BSgenome",
        "crisprBase",
        "crisprDesign",
        "crisprScore",
        "crisprViz",
        "GenomeInfoDb",
        "pwalign",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomicRanges",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "AnnotationDbi",
        "crisprBowtie",
        "GenomicFeatures",
        "MatrixGenerics",
        "txdbmaker",
        "VariantAnnotation",
        "basilisk",
        "basilisk.utils",
        "Gviz",
        "UCSC.utils",
        "Biobase",
        "KEGGREST",
        "dir.expiry",
        "Rbowtie",
        "ExperimentHub",
        "AnnotationHub",
        "biomaRt",
        "ensembldb",
        "biovizBase",
        "GenomicAlignments",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "SummarizedExperiment",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationFilter",
        "ProtGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "CrispRVariants": [
        "AnnotationDbi",
        "BiocParallel",
        "Biostrings",
        "GenomeInfoDb",
        "GenomicAlignments",
        "GenomicRanges",
        "IRanges",
        "Rsamtools",
        "S4Vectors",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "XVector",
        "UCSC.utils",
        "SummarizedExperiment",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "crisprVerse": [
        "crisprBase",
        "crisprBowtie",
        "crisprScore",
        "crisprDesign",
        "crisprViz",
        "BiocGenerics",
        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "BSgenome",
        "GenomeInfoDb",
        "Rbowtie",
        "AnnotationDbi",
        "GenomicFeatures",
        "MatrixGenerics",
        "rtracklayer",
        "txdbmaker",
        "VariantAnnotation",
        "basilisk",
        "basilisk.utils",
        "XVector",
        "ExperimentHub",
        "AnnotationHub",
        "Gviz",
        "Biobase",
        "KEGGREST",
        "BiocFileCache",
        "BiocVersion",
        "dir.expiry",
        "BiocIO",
        "Rsamtools",
        "UCSC.utils",
        "biomaRt",
        "ensembldb",
        "biovizBase",
        "GenomicAlignments",
        "zlibbioc",
        "SummarizedExperiment",
        "Rhtslib",
        "AnnotationFilter",
        "ProtGenerics",
        "BiocParallel",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "crisprViz": [
        "crisprBase",
        "crisprDesign",
        "BiocGenerics",
        "Biostrings",
        "BSgenome",
        "GenomeInfoDb",
        "GenomicFeatures",
        "GenomicRanges",
        "Gviz",
        "IRanges",
        "S4Vectors",
        "txdbmaker",
        "XVector",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "AnnotationDbi",
        "crisprBowtie",
        "crisprScore",
        "MatrixGenerics",
        "VariantAnnotation",
        "UCSC.utils",
        "biomaRt",
        "Biobase",
        "ensembldb",
        "biovizBase",
        "GenomicAlignments",
        "KEGGREST",
        "BiocFileCache",
        "SummarizedExperiment",
        "AnnotationFilter",
        "Rbowtie",
        "basilisk",
        "basilisk.utils",
        "ProtGenerics",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "dir.expiry",
        "ExperimentHub",
        "AnnotationHub",
        "S4Arrays",
        "DelayedArray",
        "BiocVersion",
        "SparseArray"
    ],
    "crlmm": [
        "oligoClasses",
        "preprocessCore",
        "Biobase",
        "BiocGenerics",
        "affyio",
        "illuminaio",
        "limma",
        "zlibbioc",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "Biostrings",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils"
    ],
    "CSAR": [
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "csaw": [
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    "DART": [

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    "dearseq": [

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    "decompTumor2Sig": [
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    "decontam": [

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        "zlibbioc"
    ],
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        "UCSC.utils",
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    "dks": [

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    "DMCFB": [
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        "UCSC.utils",
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        "UCSC.utils",
        "Rhtslib"
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        "UCSC.utils",
        "zlibbioc"
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        "IRanges",
        "GenomeInfoDb",
        "BiocGenerics",
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        "UCSC.utils",
        "XVector",
        "zlibbioc"
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    "DNABarcodeCompatibility": [

    ],
    "DNABarcodes": [

    ],
    "DNAcopy": [

    ],
    "DNAfusion": [
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        "GenomicRanges",
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        "Rsamtools",
        "GenomicAlignments",
        "BiocBaseUtils",
        "S4Vectors",
        "GenomicFeatures",
        "BiocGenerics",
        "zlibbioc",
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        "rtracklayer",
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        "UCSC.utils",
        "BiocIO",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "DNAshapeR": [
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        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
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        "Biostrings",
        "pwalign",
        "SummarizedExperiment",
        "VariantAnnotation",
        "AnnotationDbi",
        "GenomeInfoDb",
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
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        "Rsamtools",
        "zlibbioc",
        "rtracklayer",
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        "GenomicFeatures",
        "Rhtslib",
        "BiocIO",
        "SparseArray",
        "BiocParallel",
        "GenomicAlignments"
    ],
    "dominoSignal": [
        "biomaRt",
        "ComplexHeatmap",
        "AnnotationDbi",
        "BiocFileCache",
        "IRanges",
        "BiocGenerics",
        "Biobase",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "impute",
        "SummarizedExperiment",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
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        "AnnotationDbi",
        "annotate",
        "UCSC.utils",
        "XVector",
        "KEGGREST",
        "zlibbioc",
        "Biostrings"
    ],
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        "affy",
        "limma",
        "BiocGenerics",
        "Biobase",
        "affyio",
        "preprocessCore",
        "zlibbioc"
    ],
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        "BiocParallel",
        "fgsea",
        "GOSemSim",
        "qvalue",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
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        "SummarizedExperiment",
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        "Biobase",
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        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
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        "GenomicRanges",
        "Biostrings",
        "MSA2dist",
        "AnnotationDbi",
        "GenomicFeatures",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
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        "GenomeInfoDb",
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        "zlibbioc",
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        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "drawProteins": [

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    "dreamlet": [
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        "SingleCellExperiment",
        "edgeR",
        "SummarizedExperiment",
        "DelayedMatrixStats",
        "sparseMatrixStats",
        "MatrixGenerics",
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        "BiocParallel",
        "S4Vectors",
        "IRanges",
        "limma",
        "BiocGenerics",
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        "SparseArray",
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        "AnnotationDbi",
        "GenomicRanges",
        "XVector",
        "GenomeInfoDb",
        "EnrichmentBrowser",
        "KEGGREST",
        "BiocFileCache",
        "KEGGgraph",
        "Rgraphviz",
        "SPIA",
        "graphite",
        "pathview",
        "safe",
        "UCSC.utils",
        "zlibbioc",
        "Biostrings"
    ],
    "DRIMSeq": [
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        "IRanges",
        "S4Vectors",
        "BiocGenerics",
        "BiocParallel",
        "limma",
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        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "DriverNet": [

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    "DropletUtils": [
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        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "BiocParallel",
        "SparseArray",
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        "DelayedMatrixStats",
        "HDF5Array",
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        "S4Arrays",
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        "limma",
        "GenomeInfoDb",
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        "rhdf5filters",
        "Biobase",
        "UCSC.utils",
        "zlibbioc"
    ],
    "drugTargetInteractions": [
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        "biomaRt",
        "ensembldb",
        "BiocFileCache",
        "AnnotationFilter",
        "S4Vectors",
        "GenomicRanges",
        "AnnotationDbi",
        "BiocGenerics",
        "GenomicFeatures",
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        "GenomeInfoDb",
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        "ProtGenerics",
        "Biostrings",
        "BiocBaseUtils",
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        "XVector",
        "UCSC.utils",
        "zlibbioc",
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        "Rhtslib",
        "GenomicAlignments",
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        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "DrugVsDisease": [
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        "limma",
        "biomaRt",
        "ArrayExpress",
        "GEOquery",
        "qvalue",
        "annotate",
        "BiocGenerics",
        "Biobase",
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        "preprocessCore",
        "zlibbioc",
        "AnnotationDbi",
        "oligo",
        "BiocFileCache",
        "SummarizedExperiment",
        "S4Vectors",
        "IRanges",
        "KEGGREST",
        "oligoClasses",
        "Biostrings",
        "affxparser",
        "MatrixGenerics",
        "GenomicRanges",
        "GenomeInfoDb",
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        "DelayedArray",
        "XVector",
        "SparseArray",
        "UCSC.utils"
    ],
    "DSS": [
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        "BiocParallel",
        "bsseq",
        "BiocGenerics",
        "GenomicRanges",
        "SummarizedExperiment",
        "IRanges",
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        "zlibbioc",
        "Rhtslib",
        "GenomicAlignments"
    ],
    "dStruct": [
        "IRanges",
        "S4Vectors",
        "BiocGenerics"
    ],
    "DTA": [

    ],
    "Dune": [
        "BiocParallel",
        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "DuplexDiscovereR": [
        "InteractionSet",
        "Gviz",
        "Biostrings",
        "rtracklayer",
        "GenomicAlignments",
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "SummarizedExperiment",
        "Rsamtools",
        "BiocParallel",
        "biomaRt",
        "AnnotationDbi",
        "Biobase",
        "GenomicFeatures",
        "ensembldb",
        "BSgenome",
        "biovizBase",
        "zlibbioc",
        "BiocIO",
        "KEGGREST",
        "BiocFileCache",
        "VariantAnnotation",
        "AnnotationFilter",
        "ProtGenerics",
        "UCSC.utils",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "dupRadar": [
        "Rsubread"
    ],
    "dyebias": [
        "marray",
        "Biobase",
        "BiocGenerics",
        "limma"
    ],
    "DynDoc": [

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    "easier": [
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        "decoupleR",
        "quantiseqr",
        "DESeq2",
        "BiocParallel",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "BiocGenerics",
        "Biobase",
        "MatrixGenerics",
        "ExperimentHub",
        "AnnotationHub",
        "preprocessCore",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "GenomeInfoDb",
        "XVector",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc",
        "Biostrings"
    ],
    "EasyCellType": [
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        "AnnotationDbi",
        "BiocStyle",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "DOSE",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "BiocParallel",
        "fgsea",
        "ggtree",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "treeio",
        "UCSC.utils",
        "zlibbioc"
    ],
    "easylift": [
        "GenomicRanges",
        "BiocFileCache",
        "rtracklayer",
        "GenomeInfoDb",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "easyreporting": [

    ],
    "easyRNASeq": [
        "Biobase",
        "BiocFileCache",
        "BiocGenerics",
        "BiocParallel",
        "biomaRt",
        "Biostrings",
        "edgeR",
        "GenomeInfoDb",
        "genomeIntervals",
        "GenomicAlignments",
        "GenomicRanges",
        "SummarizedExperiment",
        "IRanges",
        "Rsamtools",
        "S4Vectors",
        "ShortRead",
        "AnnotationDbi",
        "XVector",
        "limma",
        "UCSC.utils",
        "zlibbioc",
        "Rhtslib",
        "pwalign",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray"
    ],
    "EBarrays": [
        "Biobase",
        "BiocGenerics"
    ],
    "EBcoexpress": [
        "EBarrays",
        "Biobase",
        "BiocGenerics"
    ],
    "EBImage": [
        "BiocGenerics"
    ],
    "EBSEA": [
        "DESeq2",
        "EmpiricalBrownsMethod",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "BiocGenerics",
        "Biobase",
        "BiocParallel",
        "MatrixGenerics",
        "GenomeInfoDb",
        "XVector",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "EBSeq": [

    ],
    "ecolitk": [
        "Biobase",
        "BiocGenerics"
    ],
    "EDASeq": [
        "Biobase",
        "ShortRead",
        "BiocGenerics",
        "IRanges",
        "aroma.light",
        "Rsamtools",
        "biomaRt",
        "Biostrings",
        "AnnotationDbi",
        "GenomicFeatures",
        "GenomicRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocFileCache",
        "XVector",
        "GenomeInfoDb",
        "rtracklayer",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "pwalign",
        "UCSC.utils",
        "SummarizedExperiment",
        "BiocIO",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "edge": [
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        "sva",
        "qvalue",
        "BiocGenerics",
        "genefilter",
        "BiocParallel",
        "limma",
        "edgeR",
        "MatrixGenerics",
        "AnnotationDbi",
        "annotate",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "edgeR": [
        "limma"
    ],
    "EDIRquery": [
        "InteractionSet",
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "SummarizedExperiment",
        "UCSC.utils",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "zlibbioc",
        "SparseArray"
    ],
    "eds": [

    ],
    "EGAD": [
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        "GEOquery",
        "limma",
        "impute",
        "BiocGenerics",
        "SummarizedExperiment",
        "S4Vectors",
        "MatrixGenerics",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "EGSEA": [
        "Biobase",
        "gage",
        "AnnotationDbi",
        "topGO",
        "pathview",
        "PADOG",
        "GSVA",
        "globaltest",
        "limma",
        "edgeR",
        "safe",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "graph",
        "annotate",
        "SummarizedExperiment",
        "GSEABase",
        "BiocParallel",
        "SingleCellExperiment",
        "SpatialExperiment",
        "sparseMatrixStats",
        "DelayedArray",
        "DelayedMatrixStats",
        "HDF5Array",
        "BiocSingular",
        "KEGGgraph",
        "Rgraphviz",
        "ScaledMatrix",
        "beachmat",
        "assorthead",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "Biostrings",
        "multtest",
        "GenomicRanges",
        "BiocFileCache",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "eiR": [
        "ChemmineR",
        "BiocGenerics"
    ],
    "eisaR": [
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "limma",
        "edgeR",
        "SummarizedExperiment",
        "BiocGenerics",
        "GenomeInfoDb",
        "XVector",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ELMER": [
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Vectors",
        "GenomicFeatures",
        "TCGAbiolinks",
        "Gviz",
        "ComplexHeatmap",
        "MultiAssayExperiment",
        "SummarizedExperiment",
        "biomaRt",
        "rtracklayer",
        "DelayedArray",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
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    "epivizrServer": [

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        "qvalue"
    ],
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        "rtracklayer",
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    "gdsfmt": [

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    "GEM": [

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    "genArise": [

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        "CGHcall",
        "CGHbase",
        "GenomicRanges",
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        "Biostrings",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib"
    ],
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        "BiocGenerics"
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    "GeneExpressionSignature": [
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        "BiocGenerics"
    ],
    "genefilter": [
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        "annotate",
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    "GeneGA": [

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        "Rhtslib",
        "UCSC.utils"
    ],
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        "genefilter",
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        "MatrixGenerics",
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        "annotate",
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        "UCSC.utils",
        "zlibbioc"
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    "GeneNetworkBuilder": [
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    ],
    "GeneOverlap": [

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    "geneplast": [

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        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "geneRecommender": [
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        "BiocGenerics"
    ],
    "GeneRegionScan": [
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        "Biostrings",
        "S4Vectors",
        "affxparser",
        "BiocGenerics",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "geneRxCluster": [
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        "IRanges",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "GeneSelectMMD": [
        "Biobase",
        "limma",
        "BiocGenerics"
    ],
    "GENESIS": [
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        "BiocGenerics",
        "BiocParallel",
        "GWASTools",
        "gdsfmt",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "SeqArray",
        "SeqVarTools",
        "SNPRelate",
        "GenomeInfoDb",
        "XVector",
        "DNAcopy",
        "quantsmooth",
        "Biostrings",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "Gviz",
        "rtracklayer",
        "BiocGenerics",
        "XVector",
        "GenomeInfoDb",
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        "Biobase",
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        "ensembldb",
        "biovizBase",
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        "GenomicAlignments",
        "zlibbioc",
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        "UCSC.utils",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "geNetClassifier": [
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        "EBarrays",
        "minet",
        "BiocGenerics"
    ],
    "GeneticsPed": [

    ],
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        "ComplexHeatmap",
        "DESeq2",
        "mosdef",
        "S4Vectors",
        "SummarizedExperiment",
        "BiocGenerics",
        "Biobase",
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        "KEGGREST",
        "GenomicRanges",
        "BiocParallel",
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        "topGO",
        "clusterProfiler",
        "goseq",
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        "S4Arrays",
        "DelayedArray",
        "DOSE",
        "enrichplot",
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        "SparseArray",
        "UCSC.utils",
        "XVector",
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        "Rhtslib",
        "biomaRt",
        "BiocFileCache"
    ],
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        "BiocStyle",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "GenomicRanges",
        "XVector",
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        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
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        "UCSC.utils",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "GENIE3": [

    ],
    "genoCN": [

    ],
    "genomation": [
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        "BSgenome",
        "GenomeInfoDb",
        "GenomicRanges",
        "GenomicAlignments",
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        "impute",
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        "Rsamtools",
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        "rtracklayer",
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        "BiocIO",
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        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
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        "BiocGenerics",
        "BiocParallel",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "XVector",
        "S4Vectors",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "UCSC.utils"
    ],
    "genomeIntervals": [
        "BiocGenerics",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "genomes": [

    ],
    "GenomicAlignments": [
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "SummarizedExperiment",
        "Biostrings",
        "Rsamtools",
        "BiocParallel",
        "XVector",
        "UCSC.utils",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "GenomicDataCommons": [
        "GenomicRanges",
        "IRanges",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "GenomicDistributions": [
        "IRanges",
        "GenomicRanges",
        "Biostrings",
        "GenomeInfoDb",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "GenomicFeatures": [
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "AnnotationDbi",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "GenomicFiles": [
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "SummarizedExperiment",
        "BiocParallel",
        "Rsamtools",
        "rtracklayer",
        "GenomicAlignments",
        "IRanges",
        "S4Vectors",
        "VariantAnnotation",
        "GenomeInfoDb",
        "UCSC.utils",
        "Biostrings",
        "XVector",
        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "AnnotationDbi",
        "BSgenome",
        "GenomicFeatures",
        "KEGGREST",
        "SparseArray"
    ],
    "genomicInstability": [
        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "GenomicInteractionNodes": [
        "AnnotationDbi",
        "graph",
        "GenomicRanges",
        "GenomicFeatures",
        "GenomeInfoDb",
        "IRanges",
        "RBGL",
        "S4Vectors",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "GenomicInteractions": [
        "InteractionSet",
        "Rsamtools",
        "rtracklayer",
        "GenomicRanges",
        "IRanges",
        "BiocGenerics",
        "GenomeInfoDb",
        "S4Vectors",
        "Gviz",
        "Biobase",
        "UCSC.utils",
        "XVector",
        "biomaRt",
        "AnnotationDbi",
        "GenomicFeatures",
        "ensembldb",
        "BSgenome",
        "Biostrings",
        "biovizBase",
        "GenomicAlignments",
        "SummarizedExperiment",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "BiocIO",
        "KEGGREST",
        "BiocFileCache",
        "VariantAnnotation",
        "AnnotationFilter",
        "ProtGenerics",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "GenomicOZone": [
        "GenomicRanges",
        "biomaRt",
        "ggbio",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "biovizBase",
        "Biobase",
        "SummarizedExperiment",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "BSgenome",
        "VariantAnnotation",
        "rtracklayer",
        "GenomicFeatures",
        "OrganismDbi",
        "ensembldb",
        "AnnotationFilter",
        "KEGGREST",
        "BiocIO",
        "ProtGenerics",
        "BiocParallel",
        "graph",
        "RBGL",
        "txdbmaker",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "GenomicPlot": [
        "GenomicRanges",
        "Rsamtools",
        "rtracklayer",
        "plyranges",
        "GenomeInfoDb",
        "IRanges",
        "ComplexHeatmap",
        "RCAS",
        "GenomicAlignments",
        "edgeR",
        "GenomicFeatures",
        "genomation",
        "txdbmaker",
        "BiocGenerics",
        "limma",
        "Biostrings",
        "BSgenome",
        "S4Vectors",
        "impute",
        "seqPattern",
        "UCSC.utils",
        "SummarizedExperiment",
        "BiocParallel",
        "AnnotationDbi",
        "XVector",
        "seqLogo",
        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "Biobase",
        "biomaRt",
        "KEGGREST",
        "BiocFileCache",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "GenomicRanges": [
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "GenomicScores": [
        "S4Vectors",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "BiocFileCache",
        "IRanges",
        "Biostrings",
        "GenomeInfoDb",
        "AnnotationHub",
        "rhdf5",
        "DelayedArray",
        "HDF5Array",
        "BiocVersion",
        "AnnotationDbi",
        "XVector",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "rhdf5filters",
        "Rhdf5lib",
        "KEGGREST",
        "zlibbioc"
    ],
    "GenomicSuperSignature": [
        "SummarizedExperiment",
        "ComplexHeatmap",
        "S4Vectors",
        "Biobase",
        "BiocFileCache",
        "BiocGenerics",
        "IRanges",
        "MatrixGenerics",
        "GenomicRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "GenomicTuples": [
        "GenomicRanges",
        "GenomeInfoDb",
        "S4Vectors",
        "BiocGenerics",
        "IRanges",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "GenProSeq": [
        "DeepPINCS",
        "ttgsea"
    ],
    "GenVisR": [
        "AnnotationDbi",
        "biomaRt",
        "BiocGenerics",
        "Biostrings",
        "GenomicFeatures",
        "GenomicRanges",
        "IRanges",
        "Rsamtools",
        "BSgenome",
        "GenomeInfoDb",
        "VariantAnnotation",
        "Biobase",
        "S4Vectors",
        "KEGGREST",
        "BiocFileCache",
        "XVector",
        "BiocIO",
        "rtracklayer",
        "UCSC.utils",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "SummarizedExperiment",
        "GenomicAlignments",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "GeoDiff": [
        "Biobase",
        "GeomxTools",
        "NanoStringNCTools",
        "BiocGenerics",
        "S4Vectors",
        "Biostrings",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "GEOexplorer": [
        "limma",
        "Biobase",
        "sva",
        "edgeR",
        "GEOquery",
        "impute",
        "BiocGenerics",
        "SummarizedExperiment",
        "S4Vectors",
        "genefilter",
        "BiocParallel",
        "MatrixGenerics",
        "AnnotationDbi",
        "annotate",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "GEOfastq": [

    ],
    "GEOmetadb": [

    ],
    "geomeTriD": [
        "BiocGenerics",
        "GenomeInfoDb",
        "GenomicRanges",
        "InteractionSet",
        "IRanges",
        "S4Vectors",
        "trackViewer",
        "UCSC.utils",
        "XVector",
        "SummarizedExperiment",
        "GenomicAlignments",
        "GenomicFeatures",
        "Gviz",
        "Rsamtools",
        "rtracklayer",
        "AnnotationDbi",
        "rhdf5",
        "txdbmaker",
        "Biobase",
        "KEGGREST",
        "Biostrings",
        "BiocParallel",
        "biomaRt",
        "ensembldb",
        "BSgenome",
        "biovizBase",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "BiocFileCache",
        "VariantAnnotation",
        "AnnotationFilter",
        "SparseArray",
        "ProtGenerics"
    ],
    "GeomxTools": [
        "Biobase",
        "NanoStringNCTools",
        "S4Vectors",
        "BiocGenerics",
        "Biostrings",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "GEOquery": [
        "Biobase",
        "limma",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "GEOsubmission": [
        "affy",
        "Biobase",
        "BiocGenerics",
        "affyio",
        "preprocessCore",
        "zlibbioc"
    ],
    "GeoTcgaData": [
        "cqn",
        "topconfects",
        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "gep2pep": [
        "GSEABase",
        "Biobase",
        "rhdf5",
        "BiocGenerics",
        "annotate",
        "graph",
        "AnnotationDbi",
        "Rhdf5lib",
        "rhdf5filters",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "getDEE2": [
        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "geva": [

    ],
    "GEWIST": [

    ],
    "gg4way": [
        "DESeq2",
        "edgeR",
        "limma",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "BiocGenerics",
        "Biobase",
        "BiocParallel",
        "MatrixGenerics",
        "GenomeInfoDb",
        "XVector",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ggbio": [
        "BiocGenerics",
        "biovizBase",
        "Biobase",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "SummarizedExperiment",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "BSgenome",
        "VariantAnnotation",
        "rtracklayer",
        "GenomicFeatures",
        "OrganismDbi",
        "ensembldb",
        "AnnotationDbi",
        "AnnotationFilter",
        "KEGGREST",
        "XVector",
        "BiocIO",
        "ProtGenerics",
        "UCSC.utils",
        "BiocParallel",
        "graph",
        "RBGL",
        "txdbmaker",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "biomaRt",
        "BiocFileCache"
    ],
    "ggcyto": [
        "flowCore",
        "ncdfFlow",
        "flowWorkspace",
        "Biobase",
        "BiocGenerics",
        "cytolib",
        "S4Vectors",
        "RProtoBufLib",
        "graph",
        "RBGL",
        "Rgraphviz",
        "DelayedArray",
        "Rhdf5lib",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "XVector",
        "zlibbioc"
    ],
    "ggkegg": [
        "BiocFileCache"
    ],
    "ggmanh": [
        "gdsfmt",
        "SeqArray",
        "IRanges",
        "GenomicRanges",
        "GenomeInfoDb",
        "Biostrings",
        "S4Vectors",
        "BiocGenerics",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ggmsa": [
        "Biostrings",
        "R4RNA",
        "ggtree",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "treeio",
        "UCSC.utils",
        "zlibbioc"
    ],
    "GGPA": [

    ],
    "ggsc": [
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "ggseqalign": [
        "pwalign",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "zlibbioc",
        "UCSC.utils"
    ],
    "ggspavis": [
        "SpatialExperiment",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "BiocFileCache",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "ggtree": [
        "treeio"
    ],
    "ggtreeDendro": [
        "ggtree",
        "treeio"
    ],
    "ggtreeExtra": [
        "ggtree",
        "treeio"
    ],
    "ggtreeSpace": [
        "ggtree",
        "treeio"
    ],
    "GIGSEA": [

    ],
    "ginmappeR": [
        "KEGGREST",
        "UniProt.ws",
        "Biostrings",
        "BiocGenerics",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocBaseUtils",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "gINTomics": [
        "BiocParallel",
        "biomaRt",
        "OmnipathR",
        "edgeR",
        "MultiAssayExperiment",
        "SummarizedExperiment",
        "limma",
        "BiocGenerics",
        "GenomicFeatures",
        "ReactomePA",
        "clusterProfiler",
        "AnnotationDbi",
        "GenomicRanges",
        "ggtree",
        "InteractiveComplexHeatmap",
        "ComplexHeatmap",
        "shiny.gosling",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocFileCache",
        "DOSE",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "treeio",
        "BiocBaseUtils",
        "DelayedArray",
        "graphite",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "fgsea",
        "UCSC.utils",
        "graph",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
    "girafe": [
        "BiocGenerics",
        "S4Vectors",
        "Rsamtools",
        "ShortRead",
        "genomeIntervals",
        "Biobase",
        "Biostrings",
        "pwalign",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "GenomicRanges",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "UCSC.utils",
        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "GLAD": [

    ],
    "GladiaTOX": [

    ],
    "Glimma": [
        "edgeR",
        "DESeq2",
        "limma",
        "SummarizedExperiment",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "BiocParallel",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "glmGamPoi": [
        "DelayedMatrixStats",
        "MatrixGenerics",
        "SparseArray",
        "DelayedArray",
        "HDF5Array",
        "SummarizedExperiment",
        "SingleCellExperiment",
        "BiocGenerics",
        "beachmat",
        "assorthead",
        "S4Vectors",
        "IRanges",
        "S4Arrays",
        "sparseMatrixStats",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "GenomicRanges",
        "XVector",
        "Biobase",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "glmSparseNet": [
        "biomaRt",
        "MultiAssayExperiment",
        "SummarizedExperiment",
        "TCGAutils",
        "AnnotationDbi",
        "BiocFileCache",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "GenomicFeatures",
        "GenomicDataCommons",
        "RaggedExperiment",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "BiocParallel",
        "Rhtslib"
    ],
    "GlobalAncova": [
        "globaltest",
        "annotate",
        "AnnotationDbi",
        "Biobase",
        "GSEABase",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "graph",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "globalSeq": [

    ],
    "globaltest": [
        "Biobase",
        "AnnotationDbi",
        "annotate",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "GloScope": [
        "BiocParallel",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "Biobase",
        "UCSC.utils",
        "zlibbioc"
    ],
    "gmapR": [
        "GenomeInfoDb",
        "GenomicRanges",
        "Rsamtools",
        "S4Vectors",
        "IRanges",
        "BiocGenerics",
        "rtracklayer",
        "GenomicFeatures",
        "Biostrings",
        "VariantAnnotation",
        "Biobase",
        "BSgenome",
        "GenomicAlignments",
        "BiocParallel",
        "XVector",
        "BiocIO",
        "UCSC.utils",
        "SummarizedExperiment",
        "AnnotationDbi",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "KEGGREST",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "GmicR": [
        "AnnotationDbi",
        "Category",
        "GSEABase",
        "GOstats",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "graph",
        "RBGL",
        "genefilter",
        "annotate",
        "AnnotationForge",
        "Rgraphviz",
        "impute",
        "preprocessCore",
        "MatrixGenerics",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "gmoviz": [
        "GenomicRanges",
        "Rsamtools",
        "ComplexHeatmap",
        "BiocGenerics",
        "Biostrings",
        "GenomeInfoDb",
        "GenomicAlignments",
        "GenomicFeatures",
        "IRanges",
        "rtracklayer",
        "S4Vectors",
        "XVector",
        "UCSC.utils",
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        "SparseArray"
    ],
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        "BiocParallel"
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        "biomaRt",
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        "KEGGREST",
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        "KEGGREST",
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        "treeio",
        "Biostrings",
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        "zlibbioc"
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        "BiocFileCache",
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        "zlibbioc"
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        "graph",
        "AnnotationDbi",
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        "UCSC.utils",
        "zlibbioc"
    ],
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        "pwalign",
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    ],
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    "GPA": [

    ],
    "gpls": [

    ],
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        "UCSC.utils"
    ],
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    ],
    "granulator": [

    ],
    "graper": [

    ],
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    ],
    "GraphAlignment": [

    ],
    "GraphAT": [
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        "BiocGenerics"
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        "BiocGenerics",
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    "GRENITS": [

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        "GenomicAlignments",
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        "Rsamtools",
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    ],
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        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
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        "SparseArray"
    ],
    "GSALightning": [

    ],
    "GSAR": [

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        "Rhdf5lib",
        "rhdf5filters"
    ],
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        "BiocParallel",
        "MatrixGenerics",
        "GenomicRanges",
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        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
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        "annotate",
        "graph",
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        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
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        "UCSC.utils",
        "zlibbioc"
    ],
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        "SummarizedExperiment",
        "AnnotationDbi",
        "AnnotationHub",
        "BiocFileCache",
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    ],
    "GSEAmining": [

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        "BiocParallel",
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        "S4Vectors",
        "KEGGREST",
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        "zlibbioc"
    ],
    "GSgalgoR": [

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    "GSReg": [
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        "AnnotationDbi",
        "BiocGenerics",
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        "S4Vectors",
        "KEGGREST",
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        "biomaRt",
        "BiocFileCache",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
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        "Biobase",
        "GSEABase",
        "les",
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        "KEGGREST",
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        "UCSC.utils",
        "zlibbioc"
    ],
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        "IRanges",
        "Biobase",
        "SummarizedExperiment",
        "GSEABase",
        "BiocParallel",
        "SingleCellExperiment",
        "SpatialExperiment",
        "sparseMatrixStats",
        "DelayedArray",
        "DelayedMatrixStats",
        "HDF5Array",
        "BiocSingular",
        "BiocGenerics",
        "ScaledMatrix",
        "beachmat",
        "assorthead",
        "MatrixGenerics",
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        "AnnotationDbi",
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        "rhdf5filters",
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        "zlibbioc"
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        "UCSC.utils",
        "zlibbioc"
    ],
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        "CRISPRseek",
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        "SummarizedExperiment",
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        "InteractionSet",
        "KEGGREST",
        "regioneR",
        "universalmotif",
        "ensembldb",
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        "Biobase",
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        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "AnnotationFilter",
        "ProtGenerics",
        "Rhdf5lib",
        "rhdf5filters"
    ],
    "Guitar": [
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        "rtracklayer",
        "AnnotationDbi",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
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        "Rhtslib",
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        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
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        "IRanges",
        "GenomicRanges",
        "XVector",
        "rtracklayer",
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        "AnnotationDbi",
        "Biobase",
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        "Biostrings",
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        "GenomicAlignments",
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        "KEGGREST",
        "BiocFileCache",
        "SummarizedExperiment",
        "VariantAnnotation",
        "AnnotationFilter",
        "BiocIO",
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        "UCSC.utils",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "GWAS.BAYES": [
        "limma"
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    "gwascat": [
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "GenomicFeatures",
        "Biostrings",
        "AnnotationDbi",
        "BiocFileCache",
        "snpStats",
        "VariantAnnotation",
        "AnnotationHub",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "BiocVersion",
        "XVector",
        "UCSC.utils",
        "rtracklayer",
        "zlibbioc",
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        "Rsamtools",
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        "Rhtslib",
        "BiocIO",
        "BiocParallel",
        "GenomicAlignments",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "GWASTools": [
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        "gdsfmt",
        "DNAcopy",
        "quantsmooth",
        "BiocGenerics"
    ],
    "gwasurvivr": [
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        "VariantAnnotation",
        "SummarizedExperiment",
        "SNPRelate",
        "Biobase",
        "gdsfmt",
        "DNAcopy",
        "quantsmooth",
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        "BiocGenerics",
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        "IRanges",
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        "BiocParallel",
        "GenomicAlignments"
    ],
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        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
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        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
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        "AnnotationDbi",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "gypsum": [

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        "S4Vectors",
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        "Biostrings",
        "Rsamtools",
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        "rhdf5filters",
        "zlibbioc"
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    "hapFabia": [
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        "fabia",
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    ],
    "Harman": [

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    "HarmonizR": [
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        "limma",
        "SummarizedExperiment",
        "MatrixGenerics",
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        "S4Vectors",
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        "AnnotationDbi",
        "annotate",
        "UCSC.utils",
        "XVector",
        "KEGGREST",
        "zlibbioc",
        "Biostrings"
    ],
    "Harshlight": [
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        "altcdfenvs",
        "Biobase",
        "BiocGenerics",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "S4Vectors",
        "makecdfenv",
        "Biostrings",
        "hypergraph",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "graph",
        "UCSC.utils"
    ],
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        "BiocFileCache"
    ],
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        "SparseArray",
        "DelayedArray",
        "rhdf5",
        "rhdf5filters",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "S4Arrays",
        "Rhdf5lib",
        "MatrixGenerics",
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        "zlibbioc"
    ],
    "HDTD": [

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    "hdxmsqc": [
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        "S4Vectors",
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        "BiocStyle",
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        "IRanges",
        "SummarizedExperiment",
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        "AnnotationFilter",
        "Biobase",
        "BiocParallel",
        "MetaboCoreUtils",
        "GenomicRanges",
        "BiocBaseUtils",
        "DelayedArray",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "heatmaps": [
        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "EBImage",
        "BiocGenerics",
        "GenomeInfoDb",
        "S4Vectors",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "Heatplus": [

    ],
    "HelloRanges": [
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        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "Biostrings",
        "BSgenome",
        "GenomicFeatures",
        "VariantAnnotation",
        "Rsamtools",
        "GenomicAlignments",
        "rtracklayer",
        "GenomeInfoDb",
        "SummarizedExperiment",
        "BiocIO",
        "XVector",
        "UCSC.utils",
        "BiocParallel",
        "AnnotationDbi",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray"
    ],
    "HELP": [
        "Biobase",
        "BiocGenerics"
    ],
    "HEM": [
        "Biobase",
        "BiocGenerics"
    ],
    "hermes": [
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        "Biobase",
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        "DESeq2",
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        "GenomicRanges",
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        "limma",
        "MultiAssayExperiment",
        "S4Vectors",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocParallel",
        "MatrixGenerics",
        "GenomeInfoDb",
        "XVector",
        "BiocBaseUtils",
        "DelayedArray",
        "S4Arrays",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc",
        "Biostrings"
    ],
    "HERON": [
        "SummarizedExperiment",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "limma",
        "BiocGenerics",
        "GenomeInfoDb",
        "XVector",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "multtest",
        "zlibbioc"
    ],
    "Herper": [

    ],
    "HGC": [

    ],
    "hiAnnotator": [
        "GenomicRanges",
        "rtracklayer",
        "BSgenome",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "Biostrings",
        "BiocIO",
        "XVector",
        "Rsamtools",
        "zlibbioc",
        "GenomicAlignments",
        "UCSC.utils",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "HIBAG": [

    ],
    "HicAggR": [
        "InteractionSet",
        "BiocGenerics",
        "BiocParallel",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "rhdf5",
        "rtracklayer",
        "S4Vectors",
        "UCSC.utils",
        "XVector",
        "SummarizedExperiment",
        "Rhdf5lib",
        "rhdf5filters",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "HiCBricks": [
        "rhdf5",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "BiocParallel",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc"
    ],
    "HiCcompare": [
        "InteractionSet",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "BiocParallel",
        "rhdf5",
        "BiocGenerics",
        "GenomeInfoDb",
        "XVector",
        "SummarizedExperiment",
        "Rhdf5lib",
        "rhdf5filters",
        "UCSC.utils",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "zlibbioc",
        "SparseArray"
    ],
    "HiCDCPlus": [
        "InteractionSet",
        "GenomicInteractions",
        "BSgenome",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "Biostrings",
        "rtracklayer",
        "S4Vectors",
        "BiocGenerics",
        "XVector",
        "BiocIO",
        "Rsamtools",
        "UCSC.utils",
        "Gviz",
        "Biobase",
        "SummarizedExperiment",
        "zlibbioc",
        "GenomicAlignments",
        "BiocParallel",
        "biomaRt",
        "AnnotationDbi",
        "GenomicFeatures",
        "ensembldb",
        "biovizBase",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "BiocFileCache",
        "VariantAnnotation",
        "AnnotationFilter",
        "SparseArray",
        "ProtGenerics"
    ],
    "HiCDOC": [
        "InteractionSet",
        "GenomicRanges",
        "SummarizedExperiment",
        "zlibbioc",
        "S4Vectors",
        "BiocParallel",
        "BiocGenerics",
        "multiHiCcompare",
        "GenomeInfoDb",
        "IRanges",
        "UCSC.utils",
        "XVector",
        "HiCcompare",
        "edgeR",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "limma",
        "rhdf5",
        "Rhdf5lib",
        "rhdf5filters"
    ],
    "HiCExperiment": [
        "InteractionSet",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "BiocGenerics",
        "BiocIO",
        "BiocParallel",
        "rhdf5",
        "UCSC.utils",
        "XVector",
        "SummarizedExperiment",
        "Rhdf5lib",
        "rhdf5filters",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "zlibbioc",
        "SparseArray"
    ],
    "HiContacts": [
        "HiCExperiment",
        "InteractionSet",
        "SummarizedExperiment",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Vectors",
        "BiocGenerics",
        "BiocIO",
        "BiocParallel",
        "UCSC.utils",
        "XVector",
        "rhdf5",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc"
    ],
    "HiCool": [
        "HiCExperiment",
        "BiocIO",
        "S4Vectors",
        "GenomicRanges",
        "IRanges",
        "InteractionSet",
        "basilisk",
        "dir.expiry",
        "basilisk.utils",
        "BiocGenerics",
        "GenomeInfoDb",
        "XVector",
        "BiocParallel",
        "rhdf5",
        "SummarizedExperiment",
        "UCSC.utils",
        "Rhdf5lib",
        "rhdf5filters",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "zlibbioc",
        "SparseArray"
    ],
    "hicVennDiagram": [
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "InteractionSet",
        "rtracklayer",
        "S4Vectors",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "SummarizedExperiment",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "hierGWAS": [

    ],
    "hierinf": [

    ],
    "HilbertCurve": [
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "HilbertVis": [

    ],
    "HilbertVisGUI": [
        "HilbertVis"
    ],
    "HiLDA": [
        "GenomicRanges",
        "S4Vectors",
        "XVector",
        "Biostrings",
        "GenomicFeatures",
        "BiocGenerics",
        "IRanges",
        "GenomeInfoDb",
        "BSgenome",
        "AnnotationDbi",
        "rtracklayer",
        "zlibbioc",
        "Biobase",
        "KEGGREST",
        "BiocIO",
        "Rsamtools",
        "UCSC.utils",
        "GenomicAlignments",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "hipathia": [
        "AnnotationHub",
        "MultiAssayExperiment",
        "SummarizedExperiment",
        "limma",
        "preprocessCore",
        "DelayedArray",
        "S4Vectors",
        "BiocGenerics",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "Biobase",
        "BiocBaseUtils",
        "GenomicRanges",
        "GenomeInfoDb",
        "KEGGREST",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "HIPPO": [
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "Biobase",
        "UCSC.utils",
        "zlibbioc"
    ],
    "hiReadsProcessor": [
        "Biostrings",
        "pwalign",
        "GenomicAlignments",
        "BiocParallel",
        "hiAnnotator",
        "BiocGenerics",
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "SummarizedExperiment",
        "Rsamtools",
        "rtracklayer",
        "BSgenome",
        "BiocIO",
        "UCSC.utils",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "HIREewas": [

    ],
    "HiTC": [
        "IRanges",
        "GenomicRanges",
        "Biostrings",
        "rtracklayer",
        "GenomeInfoDb",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "UCSC.utils",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "hmdbQuery": [
        "S4Vectors",
        "BiocGenerics"
    ],
    "HMMcopy": [

    ],
    "HoloFoodR": [
        "TreeSummarizedExperiment",
        "MultiAssayExperiment",
        "S4Vectors",
        "SummarizedExperiment",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "SingleCellExperiment",
        "Biostrings",
        "BiocParallel",
        "treeio",
        "XVector",
        "GenomeInfoDb",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "hoodscanR": [
        "SpatialExperiment",
        "SummarizedExperiment",
        "ComplexHeatmap",
        "IRanges",
        "SingleCellExperiment",
        "S4Vectors",
        "BiocGenerics",
        "BiocFileCache",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "hopach": [
        "Biobase",
        "BiocGenerics"
    ],
    "HPAanalyze": [

    ],
    "hpar": [
        "ExperimentHub",
        "BiocGenerics",
        "AnnotationHub",
        "BiocFileCache",
        "S4Vectors",
        "BiocVersion",
        "AnnotationDbi",
        "Biobase",
        "IRanges",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "HPiP": [

    ],
    "HTSFilter": [
        "edgeR",
        "DESeq2",
        "BiocParallel",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "MatrixGenerics",
        "limma",
        "GenomeInfoDb",
        "XVector",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "HuBMAPR": [

    ],
    "HubPub": [
        "biocthis"
    ],
    "hummingbird": [
        "GenomicRanges",
        "SummarizedExperiment",
        "IRanges",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "XVector",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "HybridExpress": [
        "DESeq2",
        "SummarizedExperiment",
        "ComplexHeatmap",
        "BiocParallel",
        "IRanges",
        "S4Vectors",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "HybridMTest": [
        "Biobase",
        "BiocGenerics"
    ],
    "hypeR": [
        "BiocStyle"
    ],
    "hyperdraw": [
        "graph",
        "hypergraph",
        "Rgraphviz",
        "BiocGenerics"
    ],
    "hypergraph": [
        "graph",
        "BiocGenerics"
    ],
    "iASeq": [

    ],
    "iasva": [
        "SummarizedExperiment",
        "BiocParallel",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "iBBiG": [

    ],
    "ibh": [

    ],
    "iBMQ": [
        "Biobase",
        "BiocGenerics"
    ],
    "iCARE": [

    ],
    "Icens": [

    ],
    "icetea": [
        "GenomicFeatures",
        "ShortRead",
        "BiocParallel",
        "Biostrings",
        "S4Vectors",
        "Rsamtools",
        "BiocGenerics",
        "IRanges",
        "GenomicAlignments",
        "GenomicRanges",
        "rtracklayer",
        "SummarizedExperiment",
        "VariantAnnotation",
        "limma",
        "edgeR",
        "csaw",
        "DESeq2",
        "XVector",
        "GenomeInfoDb",
        "metapod",
        "Rhtslib",
        "zlibbioc",
        "Biobase",
        "MatrixGenerics",
        "AnnotationDbi",
        "BiocIO",
        "pwalign",
        "S4Arrays",
        "DelayedArray",
        "BSgenome",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils"
    ],
    "iCheck": [
        "Biobase",
        "lumi",
        "preprocessCore",
        "affy",
        "limma",
        "GeneSelectMMD",
        "BiocGenerics",
        "affyio",
        "zlibbioc",
        "methylumi",
        "GenomicFeatures",
        "GenomicRanges",
        "annotate",
        "AnnotationDbi",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "minfi",
        "SummarizedExperiment",
        "genefilter",
        "illuminaio",
        "MatrixGenerics",
        "UCSC.utils",
        "bumphunter",
        "siggenes",
        "DelayedMatrixStats",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "Rhtslib",
        "multtest"
    ],
    "iChip": [
        "limma"
    ],
    "iClusterPlus": [

    ],
    "iCNV": [
        "CODEX",
        "Rsamtools",
        "GenomeInfoDb",
        "IRanges",
        "Biostrings",
        "S4Vectors",
        "BiocGenerics",
        "XVector",
        "BSgenome",
        "UCSC.utils",
        "GenomicRanges",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "BiocIO",
        "rtracklayer",
        "GenomicAlignments",
        "SummarizedExperiment",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "iCOBRA": [
        "limma"
    ],
    "ideal": [
        "topGO",
        "DESeq2",
        "SummarizedExperiment",
        "mosdef",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "IHW",
        "goseq",
        "limma",
        "GOstats",
        "AnnotationDbi",
        "BiocParallel",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "MatrixGenerics",
        "GenomeInfoDb",
        "XVector",
        "rtracklayer",
        "GenomicFeatures",
        "Category",
        "graph",
        "RBGL",
        "annotate",
        "AnnotationForge",
        "Rgraphviz",
        "lpsymphony",
        "clusterProfiler",
        "S4Arrays",
        "DelayedArray",
        "GSEABase",
        "genefilter",
        "DOSE",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "SparseArray",
        "txdbmaker",
        "UCSC.utils",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "fgsea",
        "ggtree",
        "Rhtslib",
        "biomaRt",
        "BiocFileCache",
        "treeio"
    ],
    "IdeoViz": [
        "Biobase",
        "IRanges",
        "GenomicRanges",
        "rtracklayer",
        "GenomeInfoDb",
        "BiocGenerics",
        "S4Vectors",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "idiogram": [
        "Biobase",
        "annotate",
        "AnnotationDbi",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "idpr": [
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "idr2d": [
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "BiocGenerics",
        "S4Vectors",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "IFAA": [
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "iGC": [

    ],
    "IgGeneUsage": [
        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "igvR": [
        "GenomicRanges",
        "GenomicAlignments",
        "BrowserViz",
        "BiocGenerics",
        "rtracklayer",
        "VariantAnnotation",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "SummarizedExperiment",
        "Biostrings",
        "Rsamtools",
        "BiocParallel",
        "XVector",
        "zlibbioc",
        "BiocIO",
        "MatrixGenerics",
        "Biobase",
        "AnnotationDbi",
        "BSgenome",
        "GenomicFeatures",
        "Rhtslib",
        "KEGGREST",
        "UCSC.utils",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "igvShiny": [
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "IHW": [
        "lpsymphony",
        "BiocGenerics"
    ],
    "illuminaio": [

    ],
    "ILoReg": [
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "IMAS": [
        "GenomicFeatures",
        "IVAS",
        "BiocGenerics",
        "GenomicRanges",
        "IRanges",
        "AnnotationDbi",
        "S4Vectors",
        "GenomeInfoDb",
        "Rsamtools",
        "BiocParallel",
        "GenomicAlignments",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "SummarizedExperiment",
        "Biostrings",
        "XVector",
        "rtracklayer",
        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "imcRtools": [
        "SpatialExperiment",
        "S4Vectors",
        "SummarizedExperiment",
        "scuttle",
        "EBImage",
        "cytomapper",
        "BiocParallel",
        "SingleCellExperiment",
        "BiocNeighbors",
        "MatrixGenerics",
        "assorthead",
        "HDF5Array",
        "DelayedArray",
        "rhdf5",
        "BiocGenerics",
        "GenomicRanges",
        "S4Arrays",
        "SparseArray",
        "beachmat",
        "BiocFileCache",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "UCSC.utils",
        "XVector",
        "rhdf5filters",
        "Rhdf5lib",
        "zlibbioc"
    ],
    "IMMAN": [
        "STRINGdb",
        "pwalign",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "zlibbioc",
        "UCSC.utils"
    ],
    "immApex": [
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
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    "IsoCorrectoR": [

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    "ITALICS": [
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    "iterativeBMAsurv": [

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    "IVAS": [
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    "KBoost": [

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        "zlibbioc"
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        "S4Vectors",
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        "BiocFileCache",
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    "koinar": [

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    "LBE": [

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    ],
    "les": [

    ],
    "levi": [

    ],
    "lfa": [

    ],
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    ],
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        "zlibbioc"
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        "zlibbioc"
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    ],
    "LPE": [

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        "Rgraphviz",
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    "lpsymphony": [

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        "KEGGREST",
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        "UCSC.utils",
        "zlibbioc"
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        "Rhdf5lib",
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        "zlibbioc"
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        "Biostrings",
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        "XVector",
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        "zlibbioc"
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    "M3C": [

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        "S4Vectors",
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        "SparseArray",
        "DelayedArray",
        "beachmat",
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        "BiocSingular",
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        "S4Arrays",
        "GenomicRanges",
        "XVector",
        "Biobase",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "BiocGenerics",
        "XVector",
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        "zlibbioc",
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        "SparseArray"
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        "limma",
        "Biobase",
        "Wrench",
        "BiocGenerics"
    ],
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        "BiocParallel",
        "DelayedArray",
        "Maaslin2",
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        "MatrixGenerics",
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    "maCorrPlot": [

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    "MACSQuantifyR": [

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        "BiocVersion",
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        "dir.expiry",
        "basilisk.utils",
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        "KEGGREST",
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        "zlibbioc"
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        "GenomeInfoDb",
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        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
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        "GenomicAlignments",
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        "GenomicFeatures",
        "KEGGREST",
        "SparseArray"
    ],
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        "DNAcopy",
        "zlibbioc"
    ],
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        "RnBeads",
        "snpStats",
        "crlmm",
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        "oligoClasses",
        "preprocessCore",
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        "BiocParallel",
        "sparseMatrixStats",
        "Rsamtools",
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        "BiocIO",
        "multtest",
        "Rhtslib"
    ],
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        "DOSE",
        "clusterProfiler",
        "pathview",
        "enrichplot",
        "BiocGenerics",
        "AnnotationDbi",
        "GOSemSim",
        "qvalue",
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        "AnnotationHub",
        "BiocFileCache",
        "BiocParallel",
        "fgsea",
        "ggtree",
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        "Rgraphviz",
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        "KEGGREST",
        "IRanges",
        "S4Vectors",
        "BiocVersion",
        "treeio",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "GenomicFeatures",
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        "Rsamtools",
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        "BiocParallel",
        "DESeq2",
        "TRESS",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rhtslib",
        "GenomicAlignments",
        "BiocIO",
        "UCSC.utils",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "magrene": [
        "BiocParallel"
    ],
    "MAI": [
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        "SummarizedExperiment",
        "S4Vectors",
        "Biobase",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "MAIT": [
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        "xcms",
        "Biobase",
        "RBGL",
        "graph",
        "BiocParallel",
        "MSnbase",
        "mzR",
        "BiocGenerics",
        "ProtGenerics",
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        "IRanges",
        "SummarizedExperiment",
        "MsCoreUtils",
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        "affy",
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        "pcaMethods",
        "mzID",
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        "MatrixGenerics",
        "GenomicRanges",
        "GenomeInfoDb",
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        "DelayedArray",
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        "preprocessCore",
        "zlibbioc",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "MultiAssayExperiment",
        "AnnotationFilter",
        "limma",
        "BiocBaseUtils"
    ],
    "makecdfenv": [
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        "Biobase",
        "affy",
        "zlibbioc",
        "BiocGenerics",
        "preprocessCore"
    ],
    "MANOR": [
        "GLAD"
    ],
    "MantelCorr": [

    ],
    "MAPFX": [
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        "Biobase",
        "ComplexHeatmap",
        "BiocGenerics",
        "IRanges",
        "cytolib",
        "S4Vectors",
        "RProtoBufLib",
        "Rhdf5lib"
    ],
    "maPredictDSC": [
        "affy",
        "limma",
        "gcrma",
        "ROC",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "affyio",
        "preprocessCore",
        "zlibbioc",
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        "S4Vectors",
        "KEGGREST",
        "XVector",
        "Biostrings",
        "GenomeInfoDb",
        "UCSC.utils"
    ],
    "mapscape": [

    ],
    "mariner": [
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        "BiocGenerics",
        "GenomicRanges",
        "InteractionSet",
        "plyranges",
        "GenomeInfoDb",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "IRanges",
        "SummarizedExperiment",
        "rhdf5",
        "plotgardener",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "rhdf5filters",
        "Rhdf5lib",
        "rtracklayer",
        "GenomicAlignments",
        "Rsamtools",
        "Biobase",
        "Biostrings",
        "zlibbioc",
        "Rhtslib",
        "BiocIO"
    ],
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        "S4Vectors",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "marray": [
        "limma"
    ],
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    "MBAmethyl": [

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        "BiocParallel",
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    "MeasurementError.cor": [

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        "KEGGREST",
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        "GenomicAlignments",
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        "scater",
        "SummarizedExperiment",
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        "limma",
        "scuttle",
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        "MatrixGenerics",
        "SparseArray",
        "DelayedArray",
        "beachmat",
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        "BiocSingular",
        "BiocParallel",
        "GenomicRanges",
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        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "assorthead",
        "ScaledMatrix",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
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        "Rsamtools",
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        "edgeR",
        "DNAcopy",
        "biomaRt",
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        "preprocessCore",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "BiocIO",
        "limma",
        "zlibbioc",
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        "GenomicAlignments",
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        "MatrixGenerics",
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        "XVector",
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        "UCSC.utils",
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    "megadepth": [
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        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MEIGOR": [
        "CNORode",
        "CellNOptR",
        "RBGL",
        "graph",
        "Rgraphviz",
        "BiocGenerics"
    ],
    "Melissa": [
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        "GenomicRanges",
        "BiocStyle",
        "IRanges",
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        "XVector",
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        "zlibbioc"
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        "IRanges",
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        "zlibbioc"
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    "Mergeomics": [

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        "Biobase",
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        "zlibbioc"
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        "BiocGenerics",
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        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocFileCache",
        "BiocVersion",
        "BiocParallel",
        "fgsea",
        "qvalue",
        "ggtree",
        "treeio",
        "Biostrings",
        "XVector",
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        "UCSC.utils",
        "zlibbioc"
    ],
    "meshr": [
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        "MeSHDbi",
        "Category",
        "S4Vectors",
        "BiocGenerics",
        "AnnotationDbi",
        "Biobase",
        "graph",
        "RBGL",
        "GSEABase",
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        "annotate",
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        "KEGGREST",
        "MatrixGenerics",
        "Biostrings",
        "XVector",
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        "UCSC.utils",
        "zlibbioc"
    ],
    "MesKit": [
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        "AnnotationDbi",
        "IRanges",
        "ComplexHeatmap",
        "S4Vectors",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "messina": [

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    "metabCombiner": [
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    "metabinR": [

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    "MetaboAnnotation": [
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        "MsCoreUtils",
        "MetaboCoreUtils",
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        "BiocParallel",
        "SummarizedExperiment",
        "QFeatures",
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        "BiocVersion",
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        "ChemmineR",
        "Biobase",
        "IRanges",
        "MultiAssayExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "BiocBaseUtils",
        "Biostrings",
        "zlibbioc"
    ],
    "MetaboCoreUtils": [
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        "BiocParallel",
        "S4Vectors",
        "BiocGenerics"
    ],
    "metabolomicsWorkbenchR": [
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        "struct",
        "SummarizedExperiment",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "rols",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "metabomxtr": [
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        "multtest",
        "BiocParallel",
        "BiocGenerics"
    ],
    "MetaboSignal": [
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        "hpar",
        "KEGGREST",
        "biomaRt",
        "AnnotationDbi",
        "MWASTools",
        "mygene",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "BiocFileCache",
        "ensembldb",
        "ExperimentHub",
        "graph",
        "Rgraphviz",
        "Biostrings",
        "qvalue",
        "SummarizedExperiment",
        "ComplexHeatmap",
        "GenomicFeatures",
        "txdbmaker",
        "XVector",
        "GenomeInfoDb",
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        "AnnotationFilter",
        "rtracklayer",
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        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "UCSC.utils",
        "BiocIO",
        "BiocVersion",
        "SparseArray",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments"
    ],
    "metaCCA": [

    ],
    "MetaCyto": [
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        "FlowSOM",
        "Biobase",
        "BiocGenerics",
        "cytolib",
        "S4Vectors",
        "RProtoBufLib",
        "ConsensusClusterPlus",
        "Rhdf5lib"
    ],
    "metagene2": [
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        "BiocParallel",
        "rtracklayer",
        "GenomicAlignments",
        "GenomeInfoDb",
        "IRanges",
        "Rsamtools",
        "BiocGenerics",
        "S4Vectors",
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        "SummarizedExperiment",
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        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "metagenomeSeq": [
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        "limma",
        "Wrench",
        "BiocGenerics"
    ],
    "metahdep": [

    ],
    "metaMS": [
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        "xcms",
        "BiocGenerics",
        "Biobase",
        "RBGL",
        "graph",
        "BiocParallel",
        "MSnbase",
        "mzR",
        "ProtGenerics",
        "MassSpecWavelet",
        "S4Vectors",
        "IRanges",
        "SummarizedExperiment",
        "MsCoreUtils",
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        "MsExperiment",
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        "MetaboCoreUtils",
        "QFeatures",
        "PSMatch",
        "vsn",
        "affy",
        "impute",
        "pcaMethods",
        "mzID",
        "Rhdf5lib",
        "MatrixGenerics",
        "GenomicRanges",
        "GenomeInfoDb",
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        "DelayedArray",
        "affyio",
        "preprocessCore",
        "zlibbioc",
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        "UCSC.utils",
        "XVector",
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        "AnnotationFilter",
        "limma",
        "BiocBaseUtils"
    ],
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        "SingleCellExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "DOSE",
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        "qvalue",
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        "graph",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocParallel",
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        "Biostrings",
        "XVector",
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        "UCSC.utils",
        "zlibbioc"
    ],
    "metapod": [

    ],
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        "fgsea"
    ],
    "metaSeq": [
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        "BiocGenerics"
    ],
    "metaseqR2": [
        "DESeq2",
        "limma",
        "ABSSeq",
        "Biobase",
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        "BiocParallel",
        "biomaRt",
        "Biostrings",
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        "Rsamtools",
        "rtracklayer",
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        "BiocFileCache",
        "XVector",
        "MatrixGenerics",
        "bsseq",
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        "UCSC.utils",
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        "KEGGREST",
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        "BSgenome",
        "HDF5Array",
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        "SparseArray",
        "pwalign",
        "assorthead",
        "sparseMatrixStats",
        "rhdf5filters",
        "Rhdf5lib"
    ],
    "MetCirc": [
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        "MsCoreUtils",
        "S4Vectors",
        "BiocGenerics",
        "BiocParallel",
        "ProtGenerics",
        "IRanges",
        "MetaboCoreUtils"
    ],
    "methimpute": [
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        "GenomeInfoDb",
        "IRanges",
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "methInheritSim": [
        "methylKit",
        "GenomicRanges",
        "GenomeInfoDb",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "UCSC.utils",
        "XVector",
        "qvalue",
        "Rsamtools",
        "fastseg",
        "rtracklayer",
        "limma",
        "Rhtslib",
        "zlibbioc",
        "Biobase",
        "Biostrings",
        "BiocParallel",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "methodical": [
        "GenomicRanges",
        "SummarizedExperiment",
        "AnnotationHub",
        "annotatr",
        "BiocCheck",
        "BiocParallel",
        "BiocStyle",
        "Biostrings",
        "BSgenome",
        "DelayedArray",
        "ExperimentHub",
        "GenomeInfoDb",
        "HDF5Array",
        "IRanges",
        "MatrixGenerics",
        "rhdf5",
        "rtracklayer",
        "S4Vectors",
        "BiocGenerics",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "GenomicFeatures",
        "regioneR",
        "BiocBaseUtils",
        "biocViews",
        "graph",
        "XVector",
        "BiocIO",
        "Rsamtools",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "rhdf5filters",
        "Rhdf5lib",
        "zlibbioc",
        "GenomicAlignments",
        "Biobase",
        "ExperimentHubData",
        "methrix",
        "TCGAutils",
        "KEGGREST",
        "RBGL",
        "AnnotationHubData",
        "DelayedMatrixStats",
        "Rhtslib",
        "GenomicDataCommons",
        "MultiAssayExperiment",
        "RaggedExperiment",
        "OrganismDbi",
        "AnnotationForge",
        "sparseMatrixStats",
        "txdbmaker",
        "biomaRt"
    ],
    "MethPed": [
        "Biobase",
        "BiocGenerics"
    ],
    "MethReg": [
        "GenomicRanges",
        "SummarizedExperiment",
        "DelayedArray",
        "S4Vectors",
        "sesame",
        "AnnotationHub",
        "ExperimentHub",
        "IRanges",
        "TFBSTools",
        "BiocGenerics",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "BiocParallel",
        "preprocessCore",
        "Biobase",
        "Biostrings",
        "pwalign",
        "BSgenome",
        "CNEr",
        "DirichletMultinomial",
        "rtracklayer",
        "seqLogo",
        "KEGGREST",
        "BiocIO",
        "Rsamtools",
        "GenomicAlignments",
        "annotate",
        "UCSC.utils",
        "zlibbioc",
        "Rhtslib"
    ],
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        "SummarizedExperiment",
        "rtracklayer",
        "DelayedArray",
        "HDF5Array",
        "BSgenome",
        "DelayedMatrixStats",
        "S4Vectors",
        "GenomicRanges",
        "IRanges",
        "BiocGenerics",
        "GenomeInfoDb",
        "Biostrings",
        "BiocIO",
        "XVector",
        "Rsamtools",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "zlibbioc",
        "GenomicAlignments",
        "Biobase",
        "UCSC.utils",
        "BiocParallel",
        "Rhtslib"
    ],
    "MethTargetedNGS": [
        "Biostrings",
        "pwalign",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "Biobase",
        "BiocParallel",
        "BiocGenerics",
        "minfi",
        "SummarizedExperiment",
        "GenomicRanges",
        "Biostrings",
        "bumphunter",
        "S4Vectors",
        "GenomeInfoDb",
        "IRanges",
        "siggenes",
        "limma",
        "preprocessCore",
        "illuminaio",
        "DelayedMatrixStats",
        "genefilter",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "MatrixGenerics",
        "S4Arrays",
        "XVector",
        "GenomicFeatures",
        "AnnotationDbi",
        "SparseArray",
        "sparseMatrixStats",
        "annotate",
        "UCSC.utils",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "multtest",
        "KEGGREST",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
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        "Biobase",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "minfi",
        "bsseq",
        "plyranges",
        "bumphunter",
        "genefilter",
        "BiocGenerics",
        "SummarizedExperiment",
        "GenomeInfoDb",
        "DelayedMatrixStats",
        "limma",
        "DelayedArray",
        "BiocParallel",
        "BSgenome",
        "Biostrings",
        "HDF5Array",
        "rhdf5",
        "beachmat",
        "GenomicFeatures",
        "AnnotationDbi",
        "MatrixGenerics",
        "annotate",
        "XVector",
        "siggenes",
        "preprocessCore",
        "illuminaio",
        "GEOquery",
        "rtracklayer",
        "GenomicAlignments",
        "Rsamtools",
        "KEGGREST",
        "SparseArray",
        "assorthead",
        "BiocIO",
        "S4Arrays",
        "sparseMatrixStats",
        "UCSC.utils",
        "rhdf5filters",
        "Rhdf5lib",
        "zlibbioc",
        "Rhtslib",
        "multtest"
    ],
    "methylclock": [
        "ExperimentHub",
        "impute",
        "Biobase",
        "minfi",
        "preprocessCore",
        "planet",
        "BiocGenerics",
        "AnnotationHub",
        "BiocFileCache",
        "S4Vectors",
        "ExperimentHubData",
        "GenomicRanges",
        "SummarizedExperiment",
        "Biostrings",
        "bumphunter",
        "GenomeInfoDb",
        "IRanges",
        "siggenes",
        "limma",
        "illuminaio",
        "DelayedMatrixStats",
        "genefilter",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "BiocVersion",
        "AnnotationDbi",
        "XVector",
        "GenomicFeatures",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "AnnotationHubData",
        "annotate",
        "UCSC.utils",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "multtest",
        "KEGGREST",
        "Rsamtools",
        "rtracklayer",
        "biocViews",
        "BiocCheck",
        "graph",
        "OrganismDbi",
        "AnnotationForge",
        "zlibbioc",
        "BiocBaseUtils",
        "RBGL",
        "txdbmaker",
        "Rhtslib",
        "GenomicAlignments",
        "BiocIO",
        "biomaRt"
    ],
    "methylGSA": [
        "clusterProfiler",
        "missMethyl",
        "BiocParallel",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "DOSE",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "minfi",
        "GenomicRanges",
        "limma",
        "methylumi",
        "SummarizedExperiment",
        "fgsea",
        "ggtree",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "annotate",
        "genefilter",
        "illuminaio",
        "GenomicFeatures",
        "bumphunter",
        "siggenes",
        "preprocessCore",
        "DelayedMatrixStats",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "UCSC.utils",
        "rtracklayer",
        "treeio",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "multtest",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
    "methyLImp2": [
        "BiocParallel",
        "SummarizedExperiment",
        "GenomicRanges",
        "BiocGenerics",
        "MatrixGenerics",
        "Biobase",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "methylInheritance": [
        "methylKit",
        "BiocParallel",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "BiocGenerics",
        "GenomeInfoDb",
        "XVector",
        "qvalue",
        "Rsamtools",
        "fastseg",
        "rtracklayer",
        "limma",
        "Rhtslib",
        "zlibbioc",
        "Biobase",
        "UCSC.utils",
        "Biostrings",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "methylKit": [
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "GenomeInfoDb",
        "qvalue",
        "Rsamtools",
        "fastseg",
        "rtracklayer",
        "limma",
        "Rhtslib",
        "zlibbioc",
        "Biobase",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "BiocParallel",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "MethylMix": [
        "impute",
        "limma"
    ],
    "methylMnM": [
        "edgeR",
        "limma"
    ],
    "methylPipe": [
        "GenomicRanges",
        "SummarizedExperiment",
        "Rsamtools",
        "marray",
        "IRanges",
        "BiocGenerics",
        "Gviz",
        "GenomicAlignments",
        "Biostrings",
        "GenomeInfoDb",
        "S4Vectors",
        "XVector",
        "UCSC.utils",
        "BiocParallel",
        "rtracklayer",
        "biomaRt",
        "AnnotationDbi",
        "Biobase",
        "GenomicFeatures",
        "ensembldb",
        "BSgenome",
        "biovizBase",
        "limma",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "BiocFileCache",
        "VariantAnnotation",
        "AnnotationFilter",
        "BiocIO",
        "SparseArray",
        "ProtGenerics"
    ],
    "methylscaper": [
        "BiocParallel",
        "Biostrings",
        "pwalign",
        "SummarizedExperiment",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MethylSeekR": [
        "rtracklayer",
        "IRanges",
        "BSgenome",
        "GenomicRanges",
        "geneplotter",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "Biostrings",
        "BiocIO",
        "XVector",
        "Rsamtools",
        "Biobase",
        "annotate",
        "AnnotationDbi",
        "zlibbioc",
        "GenomicAlignments",
        "KEGGREST",
        "UCSC.utils",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "methylSig": [
        "bsseq",
        "DelayedArray",
        "DelayedMatrixStats",
        "DSS",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "S4Vectors",
        "BiocGenerics",
        "SummarizedExperiment",
        "Biobase",
        "limma",
        "BiocParallel",
        "BSgenome",
        "Biostrings",
        "HDF5Array",
        "rhdf5",
        "beachmat",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "UCSC.utils",
        "XVector",
        "assorthead",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "rhdf5filters",
        "Rhdf5lib",
        "zlibbioc",
        "Rhtslib",
        "GenomicAlignments"
    ],
    "methylumi": [
        "Biobase",
        "minfi",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "SummarizedExperiment",
        "annotate",
        "genefilter",
        "AnnotationDbi",
        "illuminaio",
        "GenomicFeatures",
        "KEGGREST",
        "Biostrings",
        "MatrixGenerics",
        "UCSC.utils",
        "XVector",
        "rtracklayer",
        "bumphunter",
        "siggenes",
        "limma",
        "preprocessCore",
        "DelayedMatrixStats",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "multtest",
        "Rhtslib"
    ],
    "MetID": [
        "ChemmineR",
        "BiocGenerics"
    ],
    "MetMashR": [
        "struct",
        "SummarizedExperiment",
        "S4Vectors",
        "rols",
        "Biobase",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "MetNet": [
        "S4Vectors",
        "SummarizedExperiment",
        "BiocParallel",
        "GENIE3",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "mfa": [
        "Biobase",
        "BiocGenerics"
    ],
    "Mfuzz": [
        "Biobase",
        "tkWidgets",
        "BiocGenerics",
        "widgetTools",
        "DynDoc"
    ],
    "MGFM": [
        "AnnotationDbi",
        "annotate",
        "Biobase",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MGFR": [
        "biomaRt",
        "annotate",
        "AnnotationDbi",
        "Biobase",
        "BiocGenerics",
        "BiocFileCache",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MGnifyR": [
        "MultiAssayExperiment",
        "TreeSummarizedExperiment",
        "SummarizedExperiment",
        "BiocGenerics",
        "mia",
        "S4Vectors",
        "SingleCellExperiment",
        "BiocParallel",
        "Biostrings",
        "bluster",
        "DECIPHER",
        "decontam",
        "DelayedArray",
        "DelayedMatrixStats",
        "DirichletMultinomial",
        "IRanges",
        "MatrixGenerics",
        "scater",
        "scuttle",
        "Biobase",
        "BiocBaseUtils",
        "GenomicRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "treeio",
        "XVector",
        "BiocNeighbors",
        "assorthead",
        "SparseArray",
        "sparseMatrixStats",
        "UCSC.utils",
        "beachmat",
        "BiocSingular",
        "ScaledMatrix",
        "zlibbioc"
    ],
    "mgsa": [

    ],
    "mia": [
        "MultiAssayExperiment",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "TreeSummarizedExperiment",
        "BiocGenerics",
        "BiocParallel",
        "Biostrings",
        "bluster",
        "DECIPHER",
        "decontam",
        "DelayedArray",
        "DelayedMatrixStats",
        "DirichletMultinomial",
        "IRanges",
        "MatrixGenerics",
        "S4Vectors",
        "scater",
        "scuttle",
        "XVector",
        "GenomeInfoDb",
        "BiocNeighbors",
        "assorthead",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "Biobase",
        "BiocBaseUtils",
        "GenomicRanges",
        "beachmat",
        "BiocSingular",
        "treeio",
        "ScaledMatrix",
        "UCSC.utils",
        "zlibbioc"
    ],
    "miaSim": [
        "TreeSummarizedExperiment",
        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SingleCellExperiment",
        "Biostrings",
        "BiocParallel",
        "treeio",
        "XVector",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "miaViz": [
        "SummarizedExperiment",
        "TreeSummarizedExperiment",
        "mia",
        "S4Vectors",
        "BiocGenerics",
        "BiocParallel",
        "DelayedArray",
        "scater",
        "ggtree",
        "DirichletMultinomial",
        "SingleCellExperiment",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "treeio",
        "MultiAssayExperiment",
        "Biostrings",
        "bluster",
        "DECIPHER",
        "decontam",
        "DelayedMatrixStats",
        "scuttle",
        "beachmat",
        "BiocNeighbors",
        "BiocSingular",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "assorthead",
        "ScaledMatrix",
        "XVector",
        "sparseMatrixStats",
        "UCSC.utils",
        "BiocBaseUtils",
        "zlibbioc"
    ],
    "MiChip": [
        "Biobase",
        "BiocGenerics"
    ],
    "microbiome": [
        "phyloseq",
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "Biobase",
        "biomformat",
        "multtest",
        "rhdf5",
        "UCSC.utils",
        "zlibbioc",
        "Rhdf5lib",
        "rhdf5filters"
    ],
    "microbiomeDASim": [
        "phyloseq",
        "metagenomeSeq",
        "Biobase",
        "BiocGenerics",
        "limma",
        "Wrench",
        "biomformat",
        "Biostrings",
        "multtest",
        "rhdf5",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc"
    ],
    "microbiomeExplorer": [
        "metagenomeSeq",
        "Biobase",
        "DESeq2",
        "biomformat",
        "limma",
        "BiocGenerics",
        "rhdf5",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "BiocParallel",
        "MatrixGenerics",
        "Wrench",
        "GenomeInfoDb",
        "XVector",
        "Rhdf5lib",
        "rhdf5filters",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MicrobiomeProfiler": [
        "clusterProfiler",
        "enrichplot",
        "AnnotationDbi",
        "DOSE",
        "GOSemSim",
        "qvalue",
        "ggtree",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocParallel",
        "fgsea",
        "treeio",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MicrobiotaProcess": [
        "Biostrings",
        "ggtree",
        "SummarizedExperiment",
        "treeio",
        "ggtreeExtra",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "microRNA": [
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "microSTASIS": [
        "BiocParallel",
        "TreeSummarizedExperiment",
        "SingleCellExperiment",
        "S4Vectors",
        "Biostrings",
        "BiocGenerics",
        "SummarizedExperiment",
        "IRanges",
        "treeio",
        "XVector",
        "GenomeInfoDb",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MICSQTL": [
        "SummarizedExperiment",
        "TOAST",
        "BiocParallel",
        "S4Vectors",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "EpiDISH",
        "limma",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "midasHLA": [
        "MultiAssayExperiment",
        "S4Vectors",
        "SummarizedExperiment",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "miloR": [
        "edgeR",
        "BiocNeighbors",
        "BiocGenerics",
        "SingleCellExperiment",
        "MatrixGenerics",
        "S4Vectors",
        "BiocParallel",
        "BiocSingular",
        "limma",
        "SummarizedExperiment",
        "assorthead",
        "DelayedArray",
        "ScaledMatrix",
        "beachmat",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "mimager": [
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "preprocessCore",
        "affy",
        "affyPLM",
        "oligo",
        "oligoClasses",
        "affyio",
        "zlibbioc",
        "gcrma",
        "Biostrings",
        "affxparser",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "XVector",
        "GenomeInfoDb",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils"
    ],
    "mina": [

    ],
    "MineICA": [
        "BiocGenerics",
        "Biobase",
        "biomaRt",
        "GOstats",
        "marray",
        "Rgraphviz",
        "graph",
        "annotate",
        "AnnotationDbi",
        "lumi",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocFileCache",
        "Category",
        "RBGL",
        "AnnotationForge",
        "affy",
        "methylumi",
        "GenomicFeatures",
        "GenomicRanges",
        "preprocessCore",
        "limma",
        "affyio",
        "zlibbioc",
        "GSEABase",
        "genefilter",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "minfi",
        "SummarizedExperiment",
        "illuminaio",
        "MatrixGenerics",
        "UCSC.utils",
        "bumphunter",
        "siggenes",
        "DelayedMatrixStats",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "Rhtslib",
        "multtest"
    ],
    "minet": [

    ],
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        "BiocGenerics",
        "GenomicRanges",
        "SummarizedExperiment",
        "Biostrings",
        "bumphunter",
        "S4Vectors",
        "GenomeInfoDb",
        "Biobase",
        "IRanges",
        "siggenes",
        "limma",
        "preprocessCore",
        "illuminaio",
        "DelayedMatrixStats",
        "genefilter",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "XVector",
        "GenomicFeatures",
        "AnnotationDbi",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "annotate",
        "UCSC.utils",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "multtest",
        "KEGGREST",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
    "MinimumDistance": [
        "VanillaICE",
        "BiocGenerics",
        "MatrixGenerics",
        "Biobase",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "SummarizedExperiment",
        "oligoClasses",
        "DNAcopy",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "affyio",
        "S4Arrays",
        "DelayedArray",
        "crlmm",
        "zlibbioc",
        "BSgenome",
        "preprocessCore",
        "illuminaio",
        "limma",
        "SparseArray",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments"
    ],
    "MiPP": [
        "Biobase",
        "BiocGenerics"
    ],
    "miQC": [
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "Biobase",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MIRA": [
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "Biobase",
        "bsseq",
        "SummarizedExperiment",
        "GenomeInfoDb",
        "DelayedMatrixStats",
        "limma",
        "DelayedArray",
        "BiocParallel",
        "BSgenome",
        "Biostrings",
        "HDF5Array",
        "rhdf5",
        "beachmat",
        "XVector",
        "SparseArray",
        "assorthead",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "MatrixGenerics",
        "S4Arrays",
        "sparseMatrixStats",
        "UCSC.utils",
        "rhdf5filters",
        "Rhdf5lib",
        "zlibbioc",
        "Rhtslib",
        "GenomicAlignments"
    ],
    "MiRaGE": [
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "AnnotationDbi",
        "IRanges",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "miRBaseConverter": [

    ],
    "miRcomp": [
        "Biobase",
        "BiocGenerics"
    ],
    "mirIntegrator": [
        "graph",
        "ROntoTools",
        "AnnotationDbi",
        "Rgraphviz",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "KEGGgraph",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MIRit": [
        "MultiAssayExperiment",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocParallel",
        "DESeq2",
        "edgeR",
        "fgsea",
        "graph",
        "graphite",
        "limma",
        "Rgraphviz",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "GenomicRanges",
        "SummarizedExperiment",
        "MatrixGenerics",
        "clusterProfiler",
        "BiocBaseUtils",
        "DelayedArray",
        "DOSE",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "ggtree",
        "UCSC.utils",
        "zlibbioc",
        "treeio"
    ],
    "miRLAB": [
        "impute",
        "limma",
        "TCGAbiolinks",
        "SummarizedExperiment",
        "ctc",
        "Category",
        "GOstats",
        "BiocGenerics",
        "AnnotationDbi",
        "Biobase",
        "graph",
        "RBGL",
        "GSEABase",
        "genefilter",
        "annotate",
        "AnnotationForge",
        "Rgraphviz",
        "MatrixGenerics",
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "biomaRt",
        "KEGGREST",
        "BiocFileCache",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "miRNAmeConverter": [
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "miRNApath": [

    ],
    "miRNAtap": [
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "miRSM": [
        "fabia",
        "iBBiG",
        "BicARE",
        "rqubic",
        "Biobase",
        "SummarizedExperiment",
        "GSEABase",
        "clusterProfiler",
        "ReactomePA",
        "DOSE",
        "multtest",
        "BiocGenerics",
        "AnnotationDbi",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "BiocParallel",
        "fgsea",
        "annotate",
        "graph",
        "graphite",
        "MatrixGenerics",
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "impute",
        "preprocessCore",
        "KEGGREST",
        "SparseArray",
        "ggtree",
        "UCSC.utils",
        "XVector",
        "treeio",
        "Biostrings",
        "zlibbioc"
    ],
    "miRspongeR": [
        "SPONGE",
        "clusterProfiler",
        "ReactomePA",
        "DOSE",
        "AnnotationDbi",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "BiocParallel",
        "fgsea",
        "graphite",
        "Biobase",
        "biomaRt",
        "ComplexHeatmap",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocFileCache",
        "ggtree",
        "graph",
        "treeio",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "mirTarRnaSeq": [

    ],
    "missMethyl": [
        "AnnotationDbi",
        "Biobase",
        "BiocGenerics",
        "GenomicRanges",
        "IRanges",
        "limma",
        "methylumi",
        "minfi",
        "S4Vectors",
        "SummarizedExperiment",
        "KEGGREST",
        "GenomeInfoDb",
        "XVector",
        "annotate",
        "genefilter",
        "illuminaio",
        "GenomicFeatures",
        "Biostrings",
        "bumphunter",
        "siggenes",
        "preprocessCore",
        "DelayedMatrixStats",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "UCSC.utils",
        "rtracklayer",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "multtest",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
    "missRows": [
        "MultiAssayExperiment",
        "S4Vectors",
        "SummarizedExperiment",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "mistyR": [

    ],
    "mitch": [

    ],
    "mitoClone2": [
        "GenomicRanges",
        "deepSNV",
        "S4Vectors",
        "Rhtslib",
        "IRanges",
        "SummarizedExperiment",
        "Biostrings",
        "VariantAnnotation",
        "BiocGenerics",
        "GenomeInfoDb",
        "XVector",
        "zlibbioc",
        "UCSC.utils",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "Rsamtools",
        "AnnotationDbi",
        "rtracklayer",
        "BSgenome",
        "GenomicFeatures",
        "KEGGREST",
        "BiocIO",
        "SparseArray",
        "BiocParallel",
        "GenomicAlignments"
    ],
    "mixOmics": [
        "BiocParallel"
    ],
    "MLInterfaces": [
        "BiocGenerics",
        "Biobase",
        "annotate",
        "genefilter",
        "SummarizedExperiment",
        "AnnotationDbi",
        "MatrixGenerics",
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "MLP": [
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MLSeq": [
        "DESeq2",
        "edgeR",
        "limma",
        "Biobase",
        "SummarizedExperiment",
        "sSeq",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "BiocParallel",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "MMDiff2": [
        "Rsamtools",
        "Biobase",
        "GenomicRanges",
        "BSgenome",
        "Biostrings",
        "S4Vectors",
        "BiocGenerics",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "BiocIO",
        "rtracklayer",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "UCSC.utils",
        "GenomicAlignments",
        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "MMUPHin": [
        "Maaslin2",
        "edgeR",
        "metagenomeSeq",
        "limma",
        "Biobase",
        "Wrench",
        "BiocGenerics"
    ],
    "mnem": [
        "graph",
        "Rgraphviz",
        "Linnorm",
        "BiocGenerics",
        "limma"
    ],
    "moanin": [
        "SummarizedExperiment",
        "topGO",
        "S4Vectors",
        "limma",
        "edgeR",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "graph",
        "AnnotationDbi",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "mobileRNA": [
        "BiocGenerics",
        "DESeq2",
        "edgeR",
        "GenomicRanges",
        "rtracklayer",
        "IRanges",
        "Biostrings",
        "S4Vectors",
        "GenomeInfoDb",
        "SummarizedExperiment",
        "XVector",
        "Biobase",
        "BiocParallel",
        "MatrixGenerics",
        "limma",
        "UCSC.utils",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "Rhtslib"
    ],
    "MODA": [
        "AMOUNTAIN",
        "impute",
        "preprocessCore",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ModCon": [

    ],
    "Modstrings": [
        "Biostrings",
        "BiocGenerics",
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "zlibbioc",
        "UCSC.utils"
    ],
    "MOFA2": [
        "rhdf5",
        "HDF5Array",
        "DelayedArray",
        "basilisk",
        "dir.expiry",
        "basilisk.utils",
        "BiocGenerics",
        "MatrixGenerics",
        "S4Vectors",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "rhdf5filters",
        "Rhdf5lib",
        "XVector",
        "zlibbioc"
    ],
    "MOGAMUN": [
        "RCy3",
        "BiocParallel",
        "BiocGenerics",
        "graph"
    ],
    "mogsa": [
        "graphite",
        "genefilter",
        "BiocGenerics",
        "GSEABase",
        "Biobase",
        "MatrixGenerics",
        "AnnotationDbi",
        "annotate",
        "graph",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MoleculeExperiment": [
        "SpatialExperiment",
        "EBImage",
        "rhdf5",
        "BiocParallel",
        "S4Vectors",
        "BiocGenerics",
        "Rhdf5lib",
        "rhdf5filters",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "BiocFileCache",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "MOMA": [
        "ComplexHeatmap",
        "MultiAssayExperiment",
        "qvalue",
        "IRanges",
        "limma",
        "SummarizedExperiment",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "S4Vectors",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "monaLisa": [
        "BiocGenerics",
        "GenomicRanges",
        "TFBSTools",
        "Biostrings",
        "IRanges",
        "BSgenome",
        "S4Vectors",
        "SummarizedExperiment",
        "BiocParallel",
        "ComplexHeatmap",
        "XVector",
        "GenomeInfoDb",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "UCSC.utils",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "pwalign",
        "CNEr",
        "DirichletMultinomial",
        "seqLogo",
        "zlibbioc",
        "GenomicAlignments",
        "annotate",
        "KEGGREST",
        "SparseArray",
        "Rhtslib",
        "AnnotationDbi"
    ],
    "monocle": [
        "Biobase",
        "BiocGenerics",
        "limma",
        "biocViews",
        "graph",
        "RBGL"
    ],
    "Moonlight2R": [
        "clusterProfiler",
        "DOSE",
        "Biobase",
        "GEOquery",
        "ComplexHeatmap",
        "GenomicRanges",
        "rtracklayer",
        "AnnotationHub",
        "EpiMix",
        "BiocGenerics",
        "ExperimentHub",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "S4Vectors",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "IRanges",
        "BiocParallel",
        "fgsea",
        "biomaRt",
        "GenomeInfoDb",
        "GenomicFeatures",
        "impute",
        "limma",
        "SummarizedExperiment",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "KEGGREST",
        "ggtree",
        "UCSC.utils",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "treeio"
    ],
    "MoonlightR": [
        "SummarizedExperiment",
        "clusterProfiler",
        "DOSE",
        "Biobase",
        "limma",
        "TCGAbiolinks",
        "GEOquery",
        "BiocGenerics",
        "AnnotationDbi",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "BiocParallel",
        "fgsea",
        "S4Vectors",
        "MatrixGenerics",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "biomaRt",
        "KEGGREST",
        "BiocFileCache",
        "SparseArray",
        "ggtree",
        "UCSC.utils",
        "XVector",
        "treeio",
        "Biostrings",
        "zlibbioc"
    ],
    "mosaics": [
        "IRanges",
        "GenomicRanges",
        "GenomicAlignments",
        "Rsamtools",
        "GenomeInfoDb",
        "S4Vectors",
        "BiocGenerics",
        "UCSC.utils",
        "SummarizedExperiment",
        "Biostrings",
        "BiocParallel",
        "XVector",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "mosbi": [
        "fabia",
        "QUBIC",
        "Biobase",
        "BiocGenerics"
    ],
    "MOSClip": [
        "MultiAssayExperiment",
        "graph",
        "graphite",
        "AnnotationDbi",
        "S4Vectors",
        "ComplexHeatmap",
        "qpgraph",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "KEGGREST",
        "SummarizedExperiment",
        "BiocBaseUtils",
        "DelayedArray",
        "GenomicRanges",
        "annotate",
        "BiocParallel",
        "GenomeInfoDb",
        "GenomicFeatures",
        "Rgraphviz",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
    "mosdef": [
        "AnnotationDbi",
        "topGO",
        "clusterProfiler",
        "goseq",
        "DESeq2",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "KEGGREST",
        "DOSE",
        "enrichplot",
        "GOSemSim",
        "qvalue",
        "GenomicRanges",
        "BiocParallel",
        "MatrixGenerics",
        "rtracklayer",
        "GenomicFeatures",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "graph",
        "SparseArray",
        "fgsea",
        "ggtree",
        "txdbmaker",
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        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "treeio",
        "Rhtslib",
        "biomaRt",
        "BiocFileCache"
    ],
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        "IRanges",
        "S4Vectors",
        "scran",
        "edgeR",
        "limma",
        "BiocGenerics",
        "SingleCellExperiment",
        "scuttle",
        "SummarizedExperiment",
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        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "BiocSingular",
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        "beachmat",
        "GenomeInfoDb",
        "GenomicRanges",
        "Rsamtools",
        "SparseArray",
        "assorthead",
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        "BiocNeighbors",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rhtslib",
        "Biobase"
    ],
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        "BiocGenerics",
        "BSgenome",
        "GenomeInfoDb",
        "IRanges",
        "GenomicRanges",
        "Biostrings",
        "GenomicAlignments",
        "edgeR",
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        "BiocIO",
        "rtracklayer",
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        "limma",
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        "SummarizedExperiment",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
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        "MotifDb",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "Biostrings",
        "BSgenome",
        "rtracklayer",
        "VariantAnnotation",
        "BiocParallel",
        "motifStack",
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        "SummarizedExperiment",
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        "BiocFileCache",
        "biomaRt",
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        "BiocIO",
        "Rsamtools",
        "UCSC.utils",
        "Biobase",
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        "ensembldb",
        "biovizBase",
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        "TFBSTools",
        "zlibbioc",
        "MatrixGenerics",
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        "DelayedArray",
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        "KEGGREST",
        "AnnotationFilter",
        "SparseArray",
        "ProtGenerics",
        "CNEr",
        "DirichletMultinomial",
        "seqLogo",
        "annotate"
    ],
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        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "Biostrings",
        "rtracklayer",
        "XVector",
        "GenomeInfoDb",
        "zlibbioc",
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        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
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        "Biostrings",
        "BSgenome",
        "S4Vectors",
        "SummarizedExperiment",
        "GenomicRanges",
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        "Rsamtools",
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        "BiocIO",
        "rtracklayer",
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        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
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        "CNEr",
        "DirichletMultinomial",
        "seqLogo",
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        "annotate",
        "KEGGREST",
        "SparseArray",
        "AnnotationDbi"
    ],
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        "TFBSTools",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "Biobase",
        "pwalign",
        "BiocParallel",
        "BSgenome",
        "CNEr",
        "DirichletMultinomial",
        "GenomicRanges",
        "rtracklayer",
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        "Rsamtools",
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        "annotate",
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        "zlibbioc",
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        "SummarizedExperiment",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "motifTestR": [
        "Biostrings",
        "GenomicRanges",
        "GenomeInfoDb",
        "IRanges",
        "S4Vectors",
        "universalmotif",
        "BiocGenerics",
        "XVector",
        "UCSC.utils",
        "MatrixGenerics",
        "zlibbioc"
    ],
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        "GenomeInfoDb",
        "biomaRt",
        "IRanges",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "S4Vectors",
        "UCSC.utils",
        "XVector",
        "Biobase",
        "KEGGREST",
        "zlibbioc",
        "Biostrings"
    ],
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        "BiocParallel",
        "BiocSingular",
        "S4Vectors",
        "SingleCellExperiment",
        "bluster",
        "fgsea",
        "scran",
        "ComplexHeatmap",
        "BiocGenerics",
        "DelayedArray",
        "ScaledMatrix",
        "beachmat",
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        "scuttle",
        "edgeR",
        "limma",
        "MatrixGenerics",
        "S4Arrays",
        "metapod",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "MPFE": [

    ],
    "mpra": [
        "BiocGenerics",
        "SummarizedExperiment",
        "limma",
        "S4Vectors",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "MPRAnalyze": [
        "BiocParallel",
        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "pwalign",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MsBackendMassbank": [
        "Spectra",
        "BiocParallel",
        "S4Vectors",
        "IRanges",
        "ProtGenerics",
        "MsCoreUtils",
        "BiocGenerics",
        "MetaboCoreUtils"
    ],
    "MsBackendMetaboLights": [
        "Spectra",
        "ProtGenerics",
        "BiocFileCache",
        "S4Vectors",
        "BiocGenerics",
        "BiocParallel",
        "IRanges",
        "MsCoreUtils",
        "MetaboCoreUtils"
    ],
    "MsBackendMgf": [
        "Spectra",
        "ProtGenerics",
        "BiocParallel",
        "S4Vectors",
        "IRanges",
        "MsCoreUtils",
        "BiocGenerics",
        "MetaboCoreUtils"
    ],
    "MsBackendMsp": [
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        "ProtGenerics",
        "BiocParallel",
        "S4Vectors",
        "IRanges",
        "MsCoreUtils",
        "BiocGenerics",
        "MetaboCoreUtils"
    ],
    "MsBackendRawFileReader": [
        "Spectra",
        "ProtGenerics",
        "MsCoreUtils",
        "S4Vectors",
        "IRanges",
        "rawrr",
        "BiocParallel",
        "BiocGenerics",
        "MetaboCoreUtils"
    ],
    "MsBackendSql": [
        "Spectra",
        "BiocParallel",
        "S4Vectors",
        "ProtGenerics",
        "MsCoreUtils",
        "IRanges",
        "BiocGenerics",
        "MetaboCoreUtils"
    ],
    "MsCoreUtils": [
        "S4Vectors",
        "BiocGenerics"
    ],
    "MsDataHub": [
        "ExperimentHub",
        "BiocGenerics",
        "AnnotationHub",
        "BiocFileCache",
        "S4Vectors",
        "BiocVersion",
        "AnnotationDbi",
        "Biobase",
        "IRanges",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MsExperiment": [
        "ProtGenerics",
        "S4Vectors",
        "IRanges",
        "Spectra",
        "SummarizedExperiment",
        "QFeatures",
        "BiocGenerics",
        "MultiAssayExperiment",
        "AnnotationFilter",
        "Biobase",
        "MsCoreUtils",
        "BiocParallel",
        "MetaboCoreUtils",
        "MatrixGenerics",
        "GenomicRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "BiocBaseUtils",
        "zlibbioc"
    ],
    "MsFeatures": [
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        "MsCoreUtils",
        "SummarizedExperiment",
        "S4Vectors",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "msgbsR": [
        "GenomicRanges",
        "BSgenome",
        "easyRNASeq",
        "edgeR",
        "GenomicAlignments",
        "GenomicFeatures",
        "GenomeInfoDb",
        "ggbio",
        "IRanges",
        "Rsamtools",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "Biostrings",
        "BiocIO",
        "rtracklayer",
        "XVector",
        "Biobase",
        "BiocFileCache",
        "BiocParallel",
        "biomaRt",
        "genomeIntervals",
        "ShortRead",
        "limma",
        "UCSC.utils",
        "AnnotationDbi",
        "biovizBase",
        "VariantAnnotation",
        "OrganismDbi",
        "ensembldb",
        "AnnotationFilter",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "ProtGenerics",
        "graph",
        "RBGL",
        "txdbmaker",
        "pwalign"
    ],
    "msImpute": [
        "scran",
        "limma",
        "SingleCellExperiment",
        "scuttle",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "BiocParallel",
        "edgeR",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "BiocSingular",
        "bluster",
        "metapod",
        "beachmat",
        "SparseArray",
        "assorthead",
        "ScaledMatrix",
        "BiocNeighbors",
        "IRanges",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "mslp": [
        "RankProd",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "msmsEDA": [
        "MSnbase",
        "BiocGenerics",
        "Biobase",
        "mzR",
        "S4Vectors",
        "ProtGenerics",
        "MsCoreUtils",
        "PSMatch",
        "BiocParallel",
        "IRanges",
        "vsn",
        "affy",
        "impute",
        "pcaMethods",
        "mzID",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "Rhdf5lib",
        "QFeatures",
        "limma",
        "MultiAssayExperiment",
        "SummarizedExperiment",
        "AnnotationFilter",
        "GenomicRanges",
        "BiocBaseUtils",
        "DelayedArray",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector"
    ],
    "msmsTests": [
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        "msmsEDA",
        "edgeR",
        "qvalue",
        "limma",
        "BiocGenerics",
        "Biobase",
        "mzR",
        "S4Vectors",
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        "MsCoreUtils",
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        "zlibbioc",
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        "MultiAssayExperiment",
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        "AnnotationFilter",
        "GenomicRanges",
        "BiocBaseUtils",
        "DelayedArray",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector"
    ],
    "MSnbase": [
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        "Biobase",
        "mzR",
        "S4Vectors",
        "ProtGenerics",
        "MsCoreUtils",
        "PSMatch",
        "BiocParallel",
        "IRanges",
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        "affy",
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        "QFeatures",
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        "MultiAssayExperiment",
        "SummarizedExperiment",
        "AnnotationFilter",
        "GenomicRanges",
        "BiocBaseUtils",
        "DelayedArray",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector"
    ],
    "MSnID": [
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        "mzID",
        "Biobase",
        "ProtGenerics",
        "mzR",
        "BiocStyle",
        "msmsTests",
        "BiocGenerics",
        "Biostrings",
        "AnnotationHub",
        "AnnotationDbi",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocFileCache",
        "BiocVersion",
        "XVector",
        "GenomeInfoDb",
        "msmsEDA",
        "edgeR",
        "qvalue",
        "MsCoreUtils",
        "PSMatch",
        "BiocParallel",
        "vsn",
        "affy",
        "impute",
        "pcaMethods",
        "Rhdf5lib",
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        "zlibbioc",
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        "QFeatures",
        "MultiAssayExperiment",
        "SummarizedExperiment",
        "AnnotationFilter",
        "GenomicRanges",
        "BiocBaseUtils",
        "DelayedArray",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray"
    ],
    "MSPrep": [
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        "S4Vectors",
        "pcaMethods",
        "preprocessCore",
        "sva",
        "Biobase",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "genefilter",
        "BiocParallel",
        "limma",
        "edgeR",
        "SparseArray",
        "AnnotationDbi",
        "annotate",
        "UCSC.utils",
        "XVector",
        "KEGGREST",
        "zlibbioc",
        "Biostrings"
    ],
    "msPurity": [
        "mzR",
        "Biobase",
        "BiocGenerics",
        "ProtGenerics",
        "Rhdf5lib"
    ],
    "msqrob2": [
        "QFeatures",
        "BiocParallel",
        "limma",
        "SummarizedExperiment",
        "MultiAssayExperiment",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "ProtGenerics",
        "AnnotationFilter",
        "MsCoreUtils",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "MsQuality": [
        "BiocParallel",
        "MsExperiment",
        "ProtGenerics",
        "Spectra",
        "S4Vectors",
        "IRanges",
        "SummarizedExperiment",
        "QFeatures",
        "BiocGenerics",
        "MsCoreUtils",
        "MetaboCoreUtils",
        "MultiAssayExperiment",
        "AnnotationFilter",
        "Biobase",
        "MatrixGenerics",
        "GenomicRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "BiocBaseUtils",
        "zlibbioc"
    ],
    "MSstats": [
        "MSstatsConvert",
        "limma",
        "preprocessCore",
        "marray"
    ],
    "MSstatsBig": [
        "MSstats",
        "MSstatsConvert",
        "limma",
        "preprocessCore",
        "marray"
    ],
    "MSstatsConvert": [

    ],
    "MSstatsLiP": [
        "MSstats",
        "MSstatsConvert",
        "Biostrings",
        "MSstatsPTM",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "limma",
        "preprocessCore",
        "marray",
        "MSstatsTMT",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MSstatsLOBD": [

    ],
    "MSstatsPTM": [
        "MSstatsTMT",
        "MSstatsConvert",
        "MSstats",
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "limma",
        "preprocessCore",
        "marray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MSstatsQC": [
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        "qcmetrics",
        "BiocGenerics",
        "Biobase",
        "mzR",
        "S4Vectors",
        "ProtGenerics",
        "MsCoreUtils",
        "PSMatch",
        "BiocParallel",
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        "vsn",
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        "impute",
        "pcaMethods",
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        "zlibbioc",
        "Rhdf5lib",
        "QFeatures",
        "limma",
        "MultiAssayExperiment",
        "SummarizedExperiment",
        "AnnotationFilter",
        "GenomicRanges",
        "BiocBaseUtils",
        "DelayedArray",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector"
    ],
    "MSstatsQCgui": [
        "MSstatsQC",
        "MSnbase",
        "qcmetrics",
        "BiocGenerics",
        "Biobase",
        "mzR",
        "S4Vectors",
        "ProtGenerics",
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        "BiocBaseUtils",
        "DelayedArray",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector"
    ],
    "MSstatsShiny": [
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        "MSstatsTMT",
        "MSstatsPTM",
        "MSstatsConvert",
        "marray",
        "limma",
        "preprocessCore",
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MSstatsTMT": [
        "limma",
        "MSstats",
        "MSstatsConvert",
        "preprocessCore",
        "marray"
    ],
    "MuData": [
        "S4Vectors",
        "rhdf5",
        "MultiAssayExperiment",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "DelayedArray",
        "BiocGenerics",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "Biobase",
        "BiocBaseUtils",
        "GenomicRanges",
        "Rhdf5lib",
        "rhdf5filters",
        "GenomeInfoDb",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "Mulcom": [
        "Biobase",
        "BiocGenerics"
    ],
    "MultiAssayExperiment": [
        "SummarizedExperiment",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "MultiBaC": [
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        "ropls",
        "pcaMethods",
        "SummarizedExperiment",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "MultiDataSet",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "limma",
        "UCSC.utils",
        "zlibbioc"
    ],
    "multiClust": [
        "ctc"
    ],
    "multicrispr": [
        "BiocGenerics",
        "Biostrings",
        "BSgenome",
        "CRISPRseek",
        "GenomeInfoDb",
        "GenomicFeatures",
        "GenomicRanges",
        "karyoploteR",
        "plyranges",
        "Rbowtie",
        "rtracklayer",
        "S4Vectors",
        "IRanges",
        "XVector",
        "BiocIO",
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        "rhdf5",
        "DelayedArray",
        "UCSC.utils",
        "AnnotationDbi",
        "regioneR",
        "biovizBase",
        "bamsignals",
        "VariantAnnotation",
        "GenomicAlignments",
        "zlibbioc",
        "Biobase",
        "KEGGREST",
        "Rhtslib",
        "SummarizedExperiment",
        "ensembldb",
        "AnnotationFilter",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "BiocParallel",
        "Rhdf5lib",
        "rhdf5filters",
        "ProtGenerics"
    ],
    "MultiDataSet": [
        "Biobase",
        "BiocGenerics",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "SummarizedExperiment",
        "limma",
        "GenomeInfoDb",
        "XVector",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "multiGSEA": [
        "graphite",
        "AnnotationDbi",
        "fgsea",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocParallel",
        "graph",
        "AnnotationHub",
        "BiocFileCache",
        "BiocVersion",
        "Biostrings",
        "multtest",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "multiHiCcompare": [
        "HiCcompare",
        "edgeR",
        "BiocParallel",
        "GenomicRanges",
        "GenomeInfoDb",
        "limma",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "UCSC.utils",
        "XVector",
        "InteractionSet",
        "rhdf5",
        "SummarizedExperiment",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "MultiMed": [

    ],
    "multiMiR": [
        "BiocGenerics",
        "AnnotationDbi",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "IRanges",
        "S4Vectors",
        "BiocGenerics",
        "MultiAssayExperiment",
        "SummarizedExperiment",
        "Biobase",
        "BiocBaseUtils",
        "DelayedArray",
        "GenomicRanges",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "Mfuzz",
        "Biobase",
        "ComplexHeatmap",
        "DESeq2",
        "S4Vectors",
        "SummarizedExperiment",
        "BiocGenerics",
        "IRanges",
        "GenomicRanges",
        "BiocParallel",
        "MatrixGenerics",
        "tkWidgets",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "widgetTools",
        "DynDoc",
        "zlibbioc"
    ],
    "multiscan": [
        "Biobase",
        "BiocGenerics"
    ],
    "multistateQTL": [
        "QTLExperiment",
        "SummarizedExperiment",
        "ComplexHeatmap",
        "S4Vectors",
        "IRanges",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "impute",
        "preprocessCore",
        "AnnotationDbi",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
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        "BiocGenerics",
        "Biobase"
    ],
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        "BiocGenerics",
        "BiocParallel",
        "IRanges",
        "S4Vectors",
        "DelayedArray",
        "DelayedMatrixStats",
        "SummarizedExperiment",
        "BiocNeighbors",
        "BiocSingular",
        "ScaledMatrix",
        "beachmat",
        "scuttle",
        "metapod",
        "scran",
        "batchelor",
        "SparseArray",
        "ResidualMatrix",
        "assorthead",
        "MatrixGenerics",
        "S4Arrays",
        "sparseMatrixStats",
        "edgeR",
        "limma",
        "bluster",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "BSgenome",
        "Biostrings",
        "VariantAnnotation",
        "rtracklayer",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "BiocIO",
        "Rsamtools",
        "UCSC.utils",
        "zlibbioc",
        "GenomicAlignments",
        "MatrixGenerics",
        "SummarizedExperiment",
        "Biobase",
        "AnnotationDbi",
        "GenomicFeatures",
        "Rhtslib",
        "KEGGREST",
        "BiocParallel",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
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        "BiocParallel",
        "ComplexHeatmap",
        "DESeq2",
        "edgeR",
        "limma",
        "S4Vectors",
        "scater",
        "scuttle",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "variancePartition",
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "MatrixGenerics",
        "SparseArray",
        "DelayedArray",
        "beachmat",
        "BiocNeighbors",
        "BiocSingular",
        "S4Arrays",
        "GenomeInfoDb",
        "assorthead",
        "ScaledMatrix",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "musicatk": [
        "SummarizedExperiment",
        "VariantAnnotation",
        "Biostrings",
        "BSgenome",
        "GenomeInfoDb",
        "GenomicFeatures",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "decompTumor2Sig",
        "ComplexHeatmap",
        "maftools",
        "BiocGenerics",
        "XVector",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "UCSC.utils",
        "AnnotationDbi",
        "Rhtslib",
        "DNAcopy",
        "zlibbioc",
        "Biobase",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "BiocParallel",
        "GenomicAlignments"
    ],
    "MutationalPatterns": [
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        "S4Vectors",
        "BiocGenerics",
        "BSgenome",
        "VariantAnnotation",
        "IRanges",
        "GenomeInfoDb",
        "Biostrings",
        "XVector",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "UCSC.utils",
        "Biobase",
        "MatrixGenerics",
        "SummarizedExperiment",
        "zlibbioc",
        "AnnotationDbi",
        "GenomicFeatures",
        "Rhtslib",
        "KEGGREST",
        "BiocParallel",
        "GenomicAlignments",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "MVCClass": [

    ],
    "MWASTools": [
        "qvalue",
        "SummarizedExperiment",
        "KEGGgraph",
        "KEGGREST",
        "ComplexHeatmap",
        "IRanges",
        "graph",
        "Rgraphviz",
        "Biostrings",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "XVector",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "mygene": [
        "GenomicFeatures",
        "txdbmaker",
        "S4Vectors",
        "BiocGenerics",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "AnnotationDbi",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "UCSC.utils",
        "Biobase",
        "BiocIO",
        "biomaRt",
        "KEGGREST",
        "BiocFileCache",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "myvariant": [
        "VariantAnnotation",
        "S4Vectors",
        "GenomeInfoDb",
        "BiocGenerics",
        "IRanges",
        "UCSC.utils",
        "MatrixGenerics",
        "GenomicRanges",
        "SummarizedExperiment",
        "Rsamtools",
        "zlibbioc",
        "Biobase",
        "XVector",
        "Biostrings",
        "AnnotationDbi",
        "rtracklayer",
        "BSgenome",
        "GenomicFeatures",
        "Rhtslib",
        "KEGGREST",
        "BiocIO",
        "BiocParallel",
        "GenomicAlignments",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "mzID": [
        "ProtGenerics"
    ],
    "mzR": [
        "Biobase",
        "BiocGenerics",
        "ProtGenerics",
        "Rhdf5lib"
    ],
    "NADfinder": [
        "BiocGenerics",
        "IRanges",
        "GenomicRanges",
        "S4Vectors",
        "SummarizedExperiment",
        "GenomicAlignments",
        "GenomeInfoDb",
        "rtracklayer",
        "limma",
        "trackViewer",
        "Rsamtools",
        "EmpiricalBrownsMethod",
        "ATACseqQC",
        "csaw",
        "BSgenome",
        "Biostrings",
        "ChIPpeakAnno",
        "GenomicScores",
        "motifStack",
        "edgeR",
        "BiocParallel",
        "metapod",
        "Rhtslib",
        "zlibbioc",
        "UCSC.utils",
        "XVector",
        "BiocIO",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "GenomicFeatures",
        "Gviz",
        "AnnotationDbi",
        "InteractionSet",
        "rhdf5",
        "txdbmaker",
        "KEGGREST",
        "pwalign",
        "RBGL",
        "biomaRt",
        "graph",
        "multtest",
        "regioneR",
        "universalmotif",
        "ensembldb",
        "SparseArray",
        "BiocFileCache",
        "AnnotationHub",
        "HDF5Array",
        "biovizBase",
        "TFBSTools",
        "Rhdf5lib",
        "rhdf5filters",
        "BiocVersion",
        "VariantAnnotation",
        "AnnotationFilter",
        "ProtGenerics",
        "CNEr",
        "DirichletMultinomial",
        "seqLogo",
        "annotate"
    ],
    "NanoMethViz": [
        "S4Vectors",
        "SummarizedExperiment",
        "BiocSingular",
        "bsseq",
        "AnnotationDbi",
        "GenomicRanges",
        "Biostrings",
        "IRanges",
        "limma",
        "Rsamtools",
        "zlibbioc",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "DelayedArray",
        "BiocParallel",
        "ScaledMatrix",
        "beachmat",
        "assorthead",
        "XVector",
        "GenomeInfoDb",
        "DelayedMatrixStats",
        "BSgenome",
        "HDF5Array",
        "rhdf5",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "BiocIO",
        "rtracklayer",
        "sparseMatrixStats",
        "UCSC.utils",
        "rhdf5filters",
        "Rhdf5lib",
        "GenomicAlignments"
    ],
    "NanoStringDiff": [
        "Biobase",
        "BiocGenerics"
    ],
    "NanoStringNCTools": [
        "Biobase",
        "S4Vectors",
        "BiocGenerics",
        "Biostrings",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "NanoTube": [
        "Biobase",
        "limma",
        "fgsea",
        "BiocGenerics",
        "BiocParallel"
    ],
    "NBAMSeq": [
        "SummarizedExperiment",
        "S4Vectors",
        "DESeq2",
        "BiocParallel",
        "genefilter",
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "MatrixGenerics",
        "AnnotationDbi",
        "annotate",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "ncdfFlow": [
        "flowCore",
        "Biobase",
        "BiocGenerics",
        "Rhdf5lib",
        "cytolib",
        "S4Vectors",
        "RProtoBufLib"
    ],
    "ncGTW": [
        "BiocParallel",
        "xcms",
        "MSnbase",
        "mzR",
        "Biobase",
        "BiocGenerics",
        "ProtGenerics",
        "MassSpecWavelet",
        "S4Vectors",
        "IRanges",
        "SummarizedExperiment",
        "MsCoreUtils",
        "MsFeatures",
        "MsExperiment",
        "Spectra",
        "MetaboCoreUtils",
        "QFeatures",
        "PSMatch",
        "vsn",
        "affy",
        "impute",
        "pcaMethods",
        "mzID",
        "Rhdf5lib",
        "MatrixGenerics",
        "GenomicRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "MultiAssayExperiment",
        "AnnotationFilter",
        "limma",
        "BiocBaseUtils"
    ],
    "NCIgraph": [
        "graph",
        "KEGGgraph",
        "RBGL",
        "RCy3",
        "BiocGenerics",
        "Rgraphviz"
    ],
    "ncRNAtools": [
        "IRanges",
        "GenomicRanges",
        "S4Vectors",
        "BiocGenerics",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ndexr": [
        "RCX"
    ],
    "nearBynding": [
        "plyranges",
        "Rsamtools",
        "S4Vectors",
        "rtracklayer",
        "GenomeInfoDb",
        "GenomicRanges",
        "BiocGenerics",
        "IRanges",
        "UCSC.utils",
        "XVector",
        "GenomicAlignments",
        "Biostrings",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "BiocIO",
        "GenomicFeatures",
        "AnnotationDbi",
        "Biobase",
        "KEGGREST",
        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "Nebulosa": [
        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "nempi": [
        "mnem",
        "epiNEM",
        "minet",
        "graph",
        "Rgraphviz",
        "Linnorm",
        "BiocGenerics",
        "limma",
        "RBGL"
    ],
    "NetActivity": [
        "DelayedArray",
        "DelayedMatrixStats",
        "DESeq2",
        "SummarizedExperiment",
        "BiocGenerics",
        "MatrixGenerics",
        "S4Vectors",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "GenomicRanges",
        "Biobase",
        "BiocParallel",
        "GenomeInfoDb",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "netboost": [
        "impute",
        "BiocStyle",
        "preprocessCore",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "nethet": [
        "limma",
        "multtest",
        "graph",
        "BiocGenerics",
        "Biobase"
    ],
    "NetPathMiner": [

    ],
    "netprioR": [

    ],
    "netresponse": [
        "BiocStyle",
        "Rgraphviz",
        "minet",
        "graph",
        "qvalue",
        "BiocGenerics"
    ],
    "NetSAM": [
        "biomaRt",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocFileCache",
        "impute",
        "preprocessCore",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "netSmooth": [
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        "clusterExperiment",
        "SummarizedExperiment",
        "SingleCellExperiment",
        "DelayedArray",
        "HDF5Array",
        "BiocGenerics",
        "limma",
        "BiocSingular",
        "S4Vectors",
        "edgeR",
        "zinbwave",
        "mbkmeans",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "scuttle",
        "beachmat",
        "BiocNeighbors",
        "BiocParallel",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "assorthead",
        "ScaledMatrix",
        "UCSC.utils",
        "XVector",
        "genefilter",
        "AnnotationDbi",
        "annotate",
        "zlibbioc",
        "KEGGREST",
        "Biostrings"
    ],
    "netZooR": [
        "pandaR",
        "yarn",
        "RCy3",
        "STRINGdb",
        "Biobase",
        "GOstats",
        "AnnotationDbi",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Category",
        "graph",
        "RBGL",
        "annotate",
        "AnnotationForge",
        "Rgraphviz",
        "biomaRt",
        "edgeR",
        "limma",
        "preprocessCore",
        "quantro",
        "BiocFileCache",
        "GSEABase",
        "genefilter",
        "Biostrings",
        "minfi",
        "XVector",
        "GenomeInfoDb",
        "MatrixGenerics",
        "GenomicRanges",
        "SummarizedExperiment",
        "bumphunter",
        "siggenes",
        "illuminaio",
        "DelayedMatrixStats",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "GenomicFeatures",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "UCSC.utils",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "multtest",
        "zlibbioc",
        "rtracklayer",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
    "NewWave": [
        "SummarizedExperiment",
        "SingleCellExperiment",
        "DelayedArray",
        "BiocSingular",
        "SharedObject",
        "BiocGenerics",
        "S4Vectors",
        "BiocParallel",
        "ScaledMatrix",
        "beachmat",
        "assorthead",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "ngsReports": [
        "BiocGenerics",
        "Biostrings",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "nipalsMCIA": [
        "ComplexHeatmap",
        "fgsea",
        "MultiAssayExperiment",
        "SummarizedExperiment",
        "IRanges",
        "BiocParallel",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "S4Vectors",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "nnNorm": [
        "marray",
        "limma"
    ],
    "nnSVG": [
        "SpatialExperiment",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "BiocParallel",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "BiocFileCache",
        "MatrixGenerics",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "NOISeq": [
        "Biobase",
        "BiocGenerics"
    ],
    "NoRCE": [
        "KEGGREST",
        "GenomeInfoDb",
        "S4Vectors",
        "SummarizedExperiment",
        "rWikiPathways",
        "zlibbioc",
        "biomaRt",
        "rtracklayer",
        "IRanges",
        "GenomicRanges",
        "GenomicFeatures",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "BiocFileCache",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
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        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "BiocParallel",
        "Rhtslib"
    ],
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        "Biobase",
        "illuminaio",
        "BiocGenerics"
    ],
    "NormalyzerDE": [
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        "limma",
        "SummarizedExperiment",
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        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
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        "DelayedArray",
        "affy",
        "affyio",
        "zlibbioc",
        "SparseArray",
        "UCSC.utils",
        "XVector"
    ],
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        "Biobase",
        "ReadqPCR",
        "BiocGenerics"
    ],
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        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "qvalue",
        "bamsignals",
        "rtracklayer",
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        "Biobase",
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        "SparseArray"
    ],
    "NPARC": [
        "BiocParallel"
    ],
    "npGSEA": [
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        "BiocGenerics",
        "annotate",
        "graph",
        "AnnotationDbi",
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        "S4Vectors",
        "KEGGREST",
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    ],
    "NTW": [

    ],
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        "S4Vectors",
        "BiocGenerics"
    ],
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        "BiocGenerics",
        "Biostrings",
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        "GenomicRanges",
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        "Rsamtools",
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    ],
    "nuCpos": [

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    "nullranges": [
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        "GenomicRanges",
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        "DelayedArray",
        "SparseArray"
    ],
    "NuPoP": [

    ],
    "occugene": [

    ],
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        "SpatialExperiment",
        "sparseMatrixStats",
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        "DelayedMatrixStats",
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        "rhdf5filters",
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        "graph",
        "zlibbioc",
        "Rhtslib",
        "GenomicAlignments",
        "pwalign",
        "UCSC.utils",
        "BiocIO"
    ],
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        "kebabs",
        "Biostrings",
        "XVector",
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        "IRanges",
        "BiocGenerics",
        "GenomeInfoDb",
        "zlibbioc",
        "UCSC.utils"
    ],
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        "GenomicRanges",
        "Gviz",
        "IRanges",
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        "GenomeInfoDb",
        "rtracklayer",
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        "BiocFileCache",
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        "ensembldb",
        "BSgenome",
        "Biostrings",
        "biovizBase",
        "Rsamtools",
        "GenomicAlignments",
        "zlibbioc",
        "BiocIO",
        "KEGGREST",
        "SummarizedExperiment",
        "VariantAnnotation",
        "AnnotationFilter",
        "ProtGenerics",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "oligo": [
        "BiocGenerics",
        "oligoClasses",
        "Biobase",
        "Biostrings",
        "affyio",
        "affxparser",
        "preprocessCore",
        "zlibbioc",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "GenomicRanges",
        "SummarizedExperiment",
        "UCSC.utils",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
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        "Biobase",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "Biostrings",
        "affyio",
        "S4Vectors",
        "zlibbioc",
        "XVector",
        "GenomeInfoDb",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils"
    ],
    "OLIN": [
        "marray",
        "limma"
    ],
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        "OLIN",
        "marray",
        "tkWidgets",
        "widgetTools",
        "limma",
        "DynDoc"
    ],
    "omada": [
        "Biobase",
        "BiocGenerics"
    ],
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        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "topGO",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "graph",
        "Biobase",
        "AnnotationDbi",
        "KEGGREST",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "Biobase",
        "BiocGenerics",
        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
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        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "BiocParallel",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "SummarizedExperiment",
        "multtest",
        "BiocGenerics",
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        "Biobase",
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        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "rexposome",
        "limma",
        "sva",
        "omicade4",
        "MultiDataSet",
        "SummarizedExperiment",
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        "S4Vectors",
        "made4",
        "MatrixGenerics",
        "GenomeInfoDb",
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        "DelayedArray",
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        "AnnotationDbi",
        "annotate",
        "UCSC.utils",
        "XVector",
        "pcaMethods",
        "impute",
        "KEGGREST",
        "zlibbioc",
        "Biostrings"
    ],
    "OmicsMLRepoR": [
        "rols",
        "BiocFileCache",
        "Biobase",
        "BiocGenerics"
    ],
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        "MultiAssayExperiment",
        "rtracklayer",
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        "GenomeInfoDb",
        "BiocGenerics",
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        "UCSC.utils",
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        "GenomicFeatures",
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        "Rsamtools",
        "GenomicAlignments",
        "SummarizedExperiment",
        "BiocIO",
        "Biobase",
        "BiocBaseUtils",
        "DelayedArray",
        "XVector",
        "zlibbioc",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "BiocParallel",
        "AnnotationDbi",
        "Rhtslib",
        "KEGGREST"
    ],
    "omicsPrint": [
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        "MultiAssayExperiment",
        "RaggedExperiment",
        "Biobase",
        "BiocBaseUtils",
        "BiocGenerics",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "GenomeInfoDb",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "fgsea",
        "S4Vectors",
        "SummarizedExperiment",
        "BiocGenerics",
        "BiocParallel",
        "MatrixGenerics",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
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        "zlibbioc"
    ],
    "Omixer": [

    ],
    "OmnipathR": [

    ],
    "ompBAM": [

    ],
    "omXplore": [
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        "SummarizedExperiment",
        "MultiAssayExperiment",
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        "Biobase",
        "mzR",
        "S4Vectors",
        "ProtGenerics",
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        "impute",
        "pcaMethods",
        "mzID",
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        "GenomicRanges",
        "QFeatures",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Rhdf5lib",
        "AnnotationFilter",
        "limma"
    ],
    "oncomix": [
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        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "GenomicRanges",
        "S4Vectors",
        "BiocGenerics",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "OncoScore": [
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        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "OncoSimulR": [
        "graph",
        "Rgraphviz",
        "BiocGenerics"
    ],
    "onlineFDR": [

    ],
    "ontoProc": [
        "Biobase",
        "S4Vectors",
        "BiocFileCache",
        "graph",
        "Rgraphviz",
        "AnnotationHub",
        "SummarizedExperiment",
        "basilisk",
        "BiocGenerics",
        "BiocVersion",
        "AnnotationDbi",
        "dir.expiry",
        "basilisk.utils",
        "MatrixGenerics",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "openCyto": [
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        "BiocGenerics",
        "flowCore",
        "flowViz",
        "ncdfFlow",
        "flowWorkspace",
        "flowClust",
        "RBGL",
        "graph",
        "cytolib",
        "S4Vectors",
        "RProtoBufLib",
        "Rgraphviz",
        "DelayedArray",
        "Rhdf5lib",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "XVector",
        "zlibbioc"
    ],
    "openPrimeR": [
        "Biostrings",
        "pwalign",
        "IRanges",
        "GenomicRanges",
        "DECIPHER",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "OpenStats": [

    ],
    "oposSOM": [
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        "Biobase",
        "graph",
        "BiocGenerics",
        "AnnotationDbi",
        "BiocFileCache",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "GSEABase",
        "GSVA",
        "BiocGenerics",
        "annotate",
        "graph",
        "AnnotationDbi",
        "S4Vectors",
        "IRanges",
        "SummarizedExperiment",
        "BiocParallel",
        "SingleCellExperiment",
        "SpatialExperiment",
        "sparseMatrixStats",
        "DelayedArray",
        "DelayedMatrixStats",
        "HDF5Array",
        "BiocSingular",
        "KEGGREST",
        "ScaledMatrix",
        "beachmat",
        "assorthead",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "GenomicRanges",
        "BiocFileCache",
        "GenomeInfoDb",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "oppti": [
        "limma"
    ],
    "optimalFlow": [
        "flowMeans",
        "Biobase",
        "flowCore",
        "BiocGenerics",
        "cytolib",
        "S4Vectors",
        "RProtoBufLib",
        "Rhdf5lib"
    ],
    "OPWeight": [
        "qvalue"
    ],
    "OrderedList": [
        "Biobase",
        "twilight",
        "BiocGenerics"
    ],
    "ORFhunteR": [
        "Biostrings",
        "rtracklayer",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "BSgenome",
        "GenomicRanges",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "UCSC.utils",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "ORFik": [
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        "GenomicRanges",
        "GenomicAlignments",
        "AnnotationDbi",
        "Biostrings",
        "biomaRt",
        "BiocFileCache",
        "BiocGenerics",
        "BiocParallel",
        "BSgenome",
        "DESeq2",
        "GenomeInfoDb",
        "GenomicFeatures",
        "Rsamtools",
        "rtracklayer",
        "SummarizedExperiment",
        "S4Vectors",
        "txdbmaker",
        "Biobase",
        "KEGGREST",
        "XVector",
        "BiocIO",
        "MatrixGenerics",
        "UCSC.utils",
        "zlibbioc",
        "Rhtslib",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "Organism.dplyr": [
        "AnnotationFilter",
        "S4Vectors",
        "GenomeInfoDb",
        "IRanges",
        "GenomicRanges",
        "GenomicFeatures",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "OrganismDbi": [
        "BiocGenerics",
        "AnnotationDbi",
        "GenomicFeatures",
        "Biobase",
        "graph",
        "RBGL",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "txdbmaker",
        "KEGGREST",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "UCSC.utils",
        "BiocIO",
        "biomaRt",
        "BiocFileCache",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "orthogene": [
        "DelayedArray",
        "ggtree",
        "BiocGenerics",
        "MatrixGenerics",
        "S4Vectors",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "treeio",
        "XVector",
        "zlibbioc"
    ],
    "orthos": [
        "SummarizedExperiment",
        "AnnotationHub",
        "basilisk",
        "BiocParallel",
        "DelayedArray",
        "ExperimentHub",
        "HDF5Array",
        "S4Vectors",
        "BiocGenerics",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "dir.expiry",
        "basilisk.utils",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "KEGGREST",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "OSAT": [

    ],
    "Oscope": [
        "EBSeq",
        "BiocParallel"
    ],
    "OTUbase": [
        "S4Vectors",
        "IRanges",
        "ShortRead",
        "Biobase",
        "Biostrings",
        "BiocGenerics",
        "XVector",
        "GenomeInfoDb",
        "BiocParallel",
        "Rsamtools",
        "GenomicAlignments",
        "GenomicRanges",
        "pwalign",
        "Rhtslib",
        "UCSC.utils",
        "SummarizedExperiment",
        "zlibbioc",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "OUTRIDER": [
        "BiocParallel",
        "GenomicFeatures",
        "SummarizedExperiment",
        "BiocGenerics",
        "DESeq2",
        "GenomicRanges",
        "IRanges",
        "pcaMethods",
        "S4Vectors",
        "txdbmaker",
        "Biobase",
        "MatrixGenerics",
        "GenomeInfoDb",
        "AnnotationDbi",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "S4Arrays",
        "DelayedArray",
        "UCSC.utils",
        "BiocIO",
        "biomaRt",
        "KEGGREST",
        "BiocFileCache",
        "SparseArray",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "Rhtslib"
    ],
    "OutSplice": [
        "AnnotationDbi",
        "GenomicRanges",
        "GenomicFeatures",
        "IRanges",
        "S4Vectors",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "UCSC.utils",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "OVESEG": [
        "BiocParallel",
        "SummarizedExperiment",
        "limma",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "PAA": [
        "limma",
        "sva",
        "genefilter",
        "BiocParallel",
        "edgeR",
        "MatrixGenerics",
        "AnnotationDbi",
        "annotate",
        "Biobase",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "packFinder": [
        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "BiocGenerics",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "padma": [
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        "S4Vectors",
        "MultiAssayExperiment",
        "Biobase",
        "BiocBaseUtils",
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    "pathwayPCA": [

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        "zlibbioc"
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    "PepsNMR": [

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    "pfamAnalyzeR": [

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        "zlibbioc"
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        "BiocGenerics"
    ],
    "philr": [
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        "treeio"
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    "PhIPData": [
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        "BiocFileCache",
        "BiocGenerics",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
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    "phosphonormalizer": [

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        "BiocFileCache",
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        "UCSC.utils",
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        "KEGGREST"
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        "rhdf5filters",
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    "pickgene": [

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    "PICS": [
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        "GenomicRanges",
        "Rsamtools",
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        "GenomeInfoDb",
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    ],
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        "SparseArray"
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    "pipeComp": [
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        "zlibbioc"
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        "SparseArray"
    ],
    "PIPETS": [
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        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
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        "dir.expiry",
        "basilisk.utils",
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        "GenomicRanges",
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        "Rhtslib",
        "BSgenome"
    ],
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        "ProtGenerics",
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        "IRanges",
        "SummarizedExperiment",
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        "BiocBaseUtils",
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        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "MSnbase",
        "rhdf5",
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        "ProtGenerics",
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        "impute",
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        "SummarizedExperiment",
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        "GenomicRanges",
        "BiocBaseUtils",
        "DelayedArray",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector"
    ],
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        "oligoClasses",
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        "affyio",
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        "preprocessCore",
        "zlibbioc",
        "Biostrings",
        "affxparser",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils"
    ],
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        "VariantAnnotation",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "SummarizedExperiment",
        "GenomeInfoDb",
        "GenomicFeatures",
        "Rsamtools",
        "Biobase",
        "Biostrings",
        "BiocGenerics",
        "rtracklayer",
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        "UCSC.utils",
        "AnnotationDbi",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc",
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        "Rhtslib",
        "GenomicAlignments",
        "BiocIO",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "BSgenome",
        "KEGGREST",
        "SparseArray"
    ],
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        "Biobase",
        "BiocGenerics",
        "affyio",
        "preprocessCore",
        "zlibbioc"
    ],
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        "BiocGenerics",
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        "affyio",
        "preprocessCore",
        "zlibbioc"
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        "biovizBase",
        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
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        "BiocIO",
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        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
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        "zlibbioc",
        "UCSC.utils"
    ],
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        "seqLogo",
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        "UCSC.utils",
        "zlibbioc"
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        "RSeqAn"
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        "BiocGenerics"
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        "CGHcall",
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        "IRanges",
        "Rsamtools",
        "BiocGenerics",
        "marray",
        "impute",
        "S4Vectors",
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        "XVector",
        "Biostrings",
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        "BiocParallel",
        "Rhtslib",
        "UCSC.utils",
        "limma"
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        "IRanges",
        "SummarizedExperiment",
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        "ProtGenerics",
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        "Biobase",
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        "BiocBaseUtils",
        "DelayedArray",
        "MatrixGenerics",
        "GenomeInfoDb",
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        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
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        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
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        "limma",
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        "BiocGenerics",
        "affyio",
        "preprocessCore",
        "zlibbioc"
    ],
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        "graph",
        "Biobase",
        "S4Vectors",
        "BiocParallel",
        "AnnotationDbi",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "GenomicFeatures",
        "Rgraphviz",
        "BiocGenerics",
        "KEGGREST",
        "UCSC.utils",
        "XVector",
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        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
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        "MSnbase",
        "BiocGenerics",
        "Biostrings",
        "IRanges",
        "limma",
        "preprocessCore",
        "S4Vectors",
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        "mzR",
        "ProtGenerics",
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        "vsn",
        "affy",
        "impute",
        "pcaMethods",
        "mzID",
        "affyio",
        "zlibbioc",
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        "QFeatures",
        "MultiAssayExperiment",
        "SummarizedExperiment",
        "AnnotationFilter",
        "GenomicRanges",
        "BiocBaseUtils",
        "DelayedArray",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray"
    ],
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        "HMMcopy",
        "rtracklayer",
        "BSgenome",
        "GenomicRanges",
        "Rsamtools",
        "IRanges",
        "limma",
        "GenomeInfoDb",
        "BiocGenerics",
        "BiocParallel",
        "S4Vectors",
        "XVector",
        "BiocIO",
        "UCSC.utils",
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        "Rhtslib",
        "GenomicAlignments",
        "SummarizedExperiment",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "qsmooth": [
        "SummarizedExperiment",
        "sva",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "genefilter",
        "BiocParallel",
        "limma",
        "edgeR",
        "SparseArray",
        "AnnotationDbi",
        "annotate",
        "UCSC.utils",
        "XVector",
        "KEGGREST",
        "zlibbioc",
        "Biostrings"
    ],
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        "Biostrings",
        "pwalign",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "sva",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "genefilter",
        "BiocParallel",
        "limma",
        "edgeR",
        "SparseArray",
        "AnnotationDbi",
        "annotate",
        "UCSC.utils",
        "XVector",
        "KEGGREST",
        "zlibbioc",
        "Biostrings"
    ],
    "QTLExperiment": [
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "quantiseqr": [
        "Biobase",
        "preprocessCore",
        "SummarizedExperiment",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "minfi",
        "BiocGenerics",
        "GenomicRanges",
        "SummarizedExperiment",
        "Biostrings",
        "bumphunter",
        "S4Vectors",
        "GenomeInfoDb",
        "IRanges",
        "siggenes",
        "limma",
        "preprocessCore",
        "illuminaio",
        "DelayedMatrixStats",
        "genefilter",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "XVector",
        "GenomicFeatures",
        "AnnotationDbi",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "annotate",
        "UCSC.utils",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "multtest",
        "KEGGREST",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
    "quantsmooth": [

    ],
    "QuasR": [
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        "Rbowtie",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "Biobase",
        "Biostrings",
        "BSgenome",
        "Rsamtools",
        "GenomicFeatures",
        "txdbmaker",
        "ShortRead",
        "BiocParallel",
        "GenomeInfoDb",
        "rtracklayer",
        "GenomicFiles",
        "AnnotationDbi",
        "Rhtslib",
        "KEGGREST",
        "XVector",
        "BiocIO",
        "UCSC.utils",
        "MatrixGenerics",
        "SummarizedExperiment",
        "GenomicAlignments",
        "VariantAnnotation",
        "zlibbioc",
        "pwalign",
        "biomaRt",
        "BiocFileCache",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "QuaternaryProd": [

    ],
    "QUBIC": [

    ],
    "qusage": [
        "limma",
        "Biobase",
        "BiocGenerics"
    ],
    "qvalue": [

    ],
    "R3CPET": [
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        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "ggbio",
        "UCSC.utils",
        "XVector",
        "biovizBase",
        "Biobase",
        "SummarizedExperiment",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "BSgenome",
        "VariantAnnotation",
        "rtracklayer",
        "GenomicFeatures",
        "OrganismDbi",
        "ensembldb",
        "AnnotationDbi",
        "AnnotationFilter",
        "KEGGREST",
        "BiocIO",
        "ProtGenerics",
        "BiocParallel",
        "graph",
        "RBGL",
        "txdbmaker",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "biomaRt",
        "BiocFileCache"
    ],
    "r3Cseq": [
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        "Rsamtools",
        "rtracklayer",
        "qvalue",
        "GenomeInfoDb",
        "IRanges",
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "UCSC.utils",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "R453Plus1Toolbox": [
        "VariantAnnotation",
        "Biostrings",
        "pwalign",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomicRanges",
        "SummarizedExperiment",
        "biomaRt",
        "BSgenome",
        "Rsamtools",
        "ShortRead",
        "AnnotationDbi",
        "BiocFileCache",
        "GenomeInfoDb",
        "BiocIO",
        "rtracklayer",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "GenomicFeatures",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils"
    ],
    "R4RNA": [
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "RadioGx": [
        "CoreGx",
        "SummarizedExperiment",
        "BiocGenerics",
        "S4Vectors",
        "Biobase",
        "BiocParallel",
        "MultiAssayExperiment",
        "MatrixGenerics",
        "piano",
        "BumpyMatrix",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "BiocBaseUtils",
        "marray",
        "fgsea",
        "limma",
        "zlibbioc"
    ],
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        "GenomicRanges",
        "IRanges",
        "Rsamtools",
        "BSgenome",
        "Biostrings",
        "SummarizedExperiment",
        "SingleCellExperiment",
        "S4Vectors",
        "GenomeInfoDb",
        "GenomicAlignments",
        "GenomicFeatures",
        "BiocGenerics",
        "BiocParallel",
        "rtracklayer",
        "Rhtslib",
        "XVector",
        "BiocIO",
        "UCSC.utils",
        "AnnotationDbi",
        "zlibbioc",
        "DelayedArray",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "KEGGREST",
        "SparseArray"
    ],
    "RaggedExperiment": [
        "GenomicRanges",
        "BiocBaseUtils",
        "BiocGenerics",
        "GenomeInfoDb",
        "IRanges",
        "MatrixGenerics",
        "S4Vectors",
        "SummarizedExperiment",
        "UCSC.utils",
        "XVector",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "zlibbioc"
    ],
    "RAIDS": [
        "gdsfmt",
        "SNPRelate",
        "GENESIS",
        "S4Vectors",
        "GenomicRanges",
        "ensembldb",
        "BSgenome",
        "AnnotationDbi",
        "IRanges",
        "AnnotationFilter",
        "VariantAnnotation",
        "MatrixGenerics",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "GenomeInfoDb",
        "Biostrings",
        "BiocIO",
        "rtracklayer",
        "XVector",
        "Rsamtools",
        "GenomicFeatures",
        "ProtGenerics",
        "BiocParallel",
        "GWASTools",
        "SeqArray",
        "SeqVarTools",
        "SummarizedExperiment",
        "zlibbioc",
        "Rhtslib",
        "UCSC.utils",
        "DNAcopy",
        "quantsmooth",
        "GenomicAlignments",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "rain": [
        "multtest",
        "BiocGenerics",
        "Biobase"
    ],
    "ramr": [
        "GenomicRanges",
        "IRanges",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ramwas": [
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        "Rsamtools",
        "biomaRt",
        "Biostrings",
        "BiocGenerics",
        "AnnotationDbi",
        "BiocFileCache",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "GenomicRanges",
        "SummarizedExperiment",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "randPack": [
        "Biobase",
        "BiocGenerics"
    ],
    "randRotation": [

    ],
    "RankProd": [

    ],
    "RAREsim": [

    ],
    "RareVariantVis": [
        "BiocGenerics",
        "VariantAnnotation",
        "GenomicFeatures",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "BSgenome",
        "SummarizedExperiment",
        "GenomicScores",
        "Biostrings",
        "BiocIO",
        "rtracklayer",
        "XVector",
        "Rsamtools",
        "UCSC.utils",
        "AnnotationDbi",
        "Biobase",
        "BiocFileCache",
        "AnnotationHub",
        "rhdf5",
        "DelayedArray",
        "HDF5Array",
        "MatrixGenerics",
        "S4Arrays",
        "zlibbioc",
        "Rhtslib",
        "KEGGREST",
        "BiocVersion",
        "SparseArray",
        "rhdf5filters",
        "Rhdf5lib",
        "BiocParallel",
        "GenomicAlignments"
    ],
    "Rarr": [
        "DelayedArray",
        "BiocGenerics",
        "MatrixGenerics",
        "S4Vectors",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "XVector",
        "zlibbioc"
    ],
    "rawDiag": [
        "BiocParallel",
        "rawrr"
    ],
    "rawrr": [

    ],
    "RbcBook1": [
        "Biobase",
        "graph",
        "BiocGenerics"
    ],
    "Rbec": [
        "dada2",
        "Biostrings",
        "ShortRead",
        "IRanges",
        "XVector",
        "BiocGenerics",
        "S4Vectors",
        "GenomeInfoDb",
        "BiocParallel",
        "Rsamtools",
        "GenomicAlignments",
        "Biobase",
        "GenomicRanges",
        "pwalign",
        "Rhtslib",
        "zlibbioc",
        "UCSC.utils",
        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "RBGL": [
        "graph",
        "BiocGenerics"
    ],
    "RBioFormats": [
        "EBImage",
        "S4Vectors",
        "BiocGenerics"
    ],
    "RBioinf": [
        "graph",
        "BiocGenerics"
    ],
    "rBiopaxParser": [

    ],
    "rBLAST": [
        "Biostrings",
        "BiocFileCache",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "RBM": [
        "limma",
        "marray"
    ],
    "Rbowtie": [

    ],
    "Rbowtie2": [
        "Rsamtools",
        "GenomeInfoDb",
        "GenomicRanges",
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "UCSC.utils"
    ],
    "rbsurv": [
        "Biobase",
        "BiocGenerics"
    ],
    "Rbwa": [

    ],
    "RCAS": [
        "GenomicRanges",
        "IRanges",
        "BSgenome",
        "GenomeInfoDb",
        "Biostrings",
        "rtracklayer",
        "GenomicFeatures",
        "txdbmaker",
        "genomation",
        "BiocGenerics",
        "S4Vectors",
        "seqLogo",
        "XVector",
        "BiocIO",
        "Rsamtools",
        "GenomicAlignments",
        "impute",
        "seqPattern",
        "UCSC.utils",
        "AnnotationDbi",
        "zlibbioc",
        "Biobase",
        "biomaRt",
        "KEGGREST",
        "BiocFileCache",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "RCASPAR": [

    ],
    "rcellminer": [
        "Biobase",
        "BiocGenerics"
    ],
    "rCGH": [
        "DNAcopy",
        "limma",
        "affy",
        "GenomicFeatures",
        "GenomeInfoDb",
        "GenomicRanges",
        "AnnotationDbi",
        "IRanges",
        "aCGH",
        "multtest",
        "Biobase",
        "BiocGenerics",
        "affyio",
        "preprocessCore",
        "zlibbioc",
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        "KEGGREST",
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        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
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        "AUCell",
        "BiocGenerics",
        "GenomeInfoDb",
        "GenomicRanges",
        "GSEABase",
        "SummarizedExperiment",
        "S4Vectors",
        "DelayedArray",
        "DelayedMatrixStats",
        "IRanges",
        "UCSC.utils",
        "XVector",
        "Biobase",
        "annotate",
        "graph",
        "AnnotationDbi",
        "MatrixGenerics",
        "S4Arrays",
        "KEGGREST",
        "SparseArray",
        "sparseMatrixStats",
        "zlibbioc",
        "Biostrings"
    ],
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        "phyloseq",
        "limma",
        "Biobase",
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        "Biostrings",
        "multtest",
        "rhdf5",
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        "IRanges",
        "XVector",
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        "UCSC.utils",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc"
    ],
    "Rcollectl": [

    ],
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        "Biostrings",
        "GOSemSim",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "AnnotationDbi",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "SingleCellExperiment",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "Biobase",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "basilisk.utils",
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        "BiocFileCache",
        "S4Vectors",
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        "basilisk",
        "BiocGenerics",
        "dir.expiry",
        "basilisk.utils"
    ],
    "RCX": [

    ],
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        "graph"
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        "BiocGenerics"
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    "Rdisop": [

    ],
    "RDRToolbox": [

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        "Biobase",
        "BiocGenerics"
    ],
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        "DOSE",
        "enrichplot",
        "graphite",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocParallel",
        "fgsea",
        "GOSemSim",
        "qvalue",
        "ggtree",
        "graph",
        "treeio",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
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        "Biobase",
        "BiocGenerics"
    ],
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        "ASSET"
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        "dir.expiry",
        "BiocStyle",
        "graph",
        "BiocGenerics"
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    "receptLoss": [
        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
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        "Biobase",
        "BiocGenerics",
        "biomformat",
        "Biostrings",
        "multtest",
        "rhdf5",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc"
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        "BiocParallel",
        "derfinder",
        "GEOquery",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "rtracklayer",
        "S4Vectors",
        "BiocGenerics",
        "AnnotationDbi",
        "bumphunter",
        "derfinderHelper",
        "GenomicAlignments",
        "GenomicFeatures",
        "GenomicFiles",
        "qvalue",
        "Rsamtools",
        "UCSC.utils",
        "XVector",
        "Biobase",
        "limma",
        "Biostrings",
        "zlibbioc",
        "BiocIO",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "VariantAnnotation",
        "Rhtslib",
        "BSgenome"
    ],
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        "SummarizedExperiment",
        "BiocFileCache",
        "rtracklayer",
        "S4Vectors",
        "GenomicRanges",
        "BiocGenerics",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "BiocParallel",
        "Rhtslib"
    ],
    "recountmethylation": [
        "minfi",
        "HDF5Array",
        "rhdf5",
        "S4Vectors",
        "BiocFileCache",
        "basilisk",
        "DelayedMatrixStats",
        "dir.expiry",
        "basilisk.utils",
        "MatrixGenerics",
        "DelayedArray",
        "sparseMatrixStats",
        "IRanges",
        "SparseArray",
        "rhdf5filters",
        "BiocGenerics",
        "S4Arrays",
        "Rhdf5lib",
        "GenomicRanges",
        "SummarizedExperiment",
        "Biostrings",
        "bumphunter",
        "GenomeInfoDb",
        "Biobase",
        "siggenes",
        "limma",
        "preprocessCore",
        "illuminaio",
        "genefilter",
        "GEOquery",
        "BiocParallel",
        "XVector",
        "GenomicFeatures",
        "AnnotationDbi",
        "annotate",
        "UCSC.utils",
        "multtest",
        "KEGGREST",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
    "recoup": [
        "GenomicRanges",
        "GenomicAlignments",
        "ComplexHeatmap",
        "BiocGenerics",
        "biomaRt",
        "Biostrings",
        "GenomeInfoDb",
        "GenomicFeatures",
        "IRanges",
        "Rsamtools",
        "rtracklayer",
        "S4Vectors",
        "txdbmaker",
        "AnnotationDbi",
        "BiocFileCache",
        "XVector",
        "UCSC.utils",
        "SummarizedExperiment",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "Biobase",
        "KEGGREST",
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        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "RedeR": [

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        "BiocParallel"
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    "REDseq": [
        "BiocGenerics",
        "multtest",
        "Biostrings",
        "BSgenome",
        "ChIPpeakAnno",
        "AnnotationDbi",
        "IRanges",
        "Biobase",
        "S4Vectors",
        "KEGGREST",
        "XVector",
        "GenomeInfoDb",
        "GenomicRanges",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "pwalign",
        "GenomicAlignments",
        "GenomicFeatures",
        "RBGL",
        "SummarizedExperiment",
        "biomaRt",
        "graph",
        "InteractionSet",
        "regioneR",
        "universalmotif",
        "ensembldb",
        "BiocFileCache",
        "AnnotationFilter",
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        "UCSC.utils",
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        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
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        "BiocSet",
        "SummarizedExperiment",
        "fgsea",
        "DOSE",
        "BiocParallel",
        "DESeq2",
        "limma",
        "BiocStyle",
        "BiocIO",
        "AnnotationDbi",
        "KEGGREST",
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "MatrixGenerics",
        "GOSemSim",
        "qvalue",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "impute",
        "preprocessCore",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
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    "regionalpcs": [
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        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "DelayedMatrixStats",
        "DelayedArray",
        "BiocSingular",
        "BiocParallel",
        "beachmat",
        "SparseArray",
        "assorthead",
        "ScaledMatrix",
        "MatrixGenerics",
        "S4Arrays",
        "sparseMatrixStats",
        "UCSC.utils",
        "zlibbioc"
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    "RegionalST": [
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        "BiocStyle",
        "BayesSpace",
        "fgsea",
        "SingleCellExperiment",
        "S4Vectors",
        "TOAST",
        "SummarizedExperiment",
        "scran",
        "rhdf5",
        "BiocFileCache",
        "BiocSingular",
        "BiocParallel",
        "BiocGenerics",
        "scuttle",
        "MatrixGenerics",
        "SparseArray",
        "DelayedArray",
        "beachmat",
        "BiocNeighbors",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "EpiDISH",
        "limma",
        "assorthead",
        "ScaledMatrix",
        "UCSC.utils",
        "XVector",
        "Rhdf5lib",
        "rhdf5filters",
        "edgeR",
        "bluster",
        "metapod",
        "zlibbioc"
    ],
    "regioneR": [
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        "IRanges",
        "BSgenome",
        "Biostrings",
        "rtracklayer",
        "GenomeInfoDb",
        "S4Vectors",
        "BiocGenerics",
        "XVector",
        "BiocIO",
        "Rsamtools",
        "UCSC.utils",
        "zlibbioc",
        "GenomicAlignments",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "regioneReloaded": [
        "regioneR",
        "GenomicRanges",
        "IRanges",
        "BSgenome",
        "Biostrings",
        "rtracklayer",
        "GenomeInfoDb",
        "S4Vectors",
        "BiocGenerics",
        "XVector",
        "BiocIO",
        "Rsamtools",
        "UCSC.utils",
        "zlibbioc",
        "GenomicAlignments",
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        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "regionReport": [
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        "derfinder",
        "DEFormats",
        "DESeq2",
        "GenomeInfoDb",
        "GenomicRanges",
        "S4Vectors",
        "SummarizedExperiment",
        "edgeR",
        "BiocGenerics",
        "AnnotationDbi",
        "BiocParallel",
        "bumphunter",
        "derfinderHelper",
        "GenomicAlignments",
        "GenomicFeatures",
        "GenomicFiles",
        "IRanges",
        "qvalue",
        "Rsamtools",
        "rtracklayer",
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        "UCSC.utils",
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        "DelayedArray",
        "KEGGREST",
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        "SparseArray",
        "Biostrings",
        "VariantAnnotation",
        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "BSgenome"
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    "regsplice": [
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        "S4Vectors",
        "limma",
        "edgeR",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
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        "Biostrings",
        "GenomicRanges",
        "Gviz",
        "IRanges",
        "RCy3",
        "S4Vectors",
        "BiocFileCache",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "BiocVersion",
        "XVector",
        "GenomeInfoDb",
        "rtracklayer",
        "biomaRt",
        "GenomicFeatures",
        "ensembldb",
        "BSgenome",
        "biovizBase",
        "Rsamtools",
        "GenomicAlignments",
        "graph",
        "SummarizedExperiment",
        "VariantAnnotation",
        "AnnotationFilter",
        "BiocIO",
        "ProtGenerics",
        "UCSC.utils",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "REMP": [
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        "minfi",
        "rtracklayer",
        "BiocGenerics",
        "S4Vectors",
        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "GenomeInfoDb",
        "BiocParallel",
        "BSgenome",
        "AnnotationHub",
        "impute",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "XVector",
        "BiocIO",
        "Rsamtools",
        "UCSC.utils",
        "bumphunter",
        "Biobase",
        "siggenes",
        "limma",
        "preprocessCore",
        "illuminaio",
        "DelayedMatrixStats",
        "genefilter",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "zlibbioc",
        "GenomicAlignments",
        "MatrixGenerics",
        "S4Arrays",
        "KEGGREST",
        "GenomicFeatures",
        "SparseArray",
        "sparseMatrixStats",
        "annotate",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "Rhtslib",
        "multtest"
    ],
    "Repitools": [
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        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "rtracklayer",
        "BSgenome",
        "edgeR",
        "DNAcopy",
        "XVector",
        "BiocIO",
        "limma",
        "UCSC.utils",
        "SummarizedExperiment",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "ReportingTools": [
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        "Category",
        "GOstats",
        "limma",
        "AnnotationDbi",
        "edgeR",
        "annotate",
        "GSEABase",
        "BiocGenerics",
        "DESeq2",
        "ggbio",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "graph",
        "RBGL",
        "genefilter",
        "GenomicRanges",
        "SummarizedExperiment",
        "BiocParallel",
        "MatrixGenerics",
        "biovizBase",
        "GenomeInfoDb",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "BSgenome",
        "VariantAnnotation",
        "rtracklayer",
        "GenomicFeatures",
        "OrganismDbi",
        "ensembldb",
        "AnnotationFilter",
        "AnnotationForge",
        "Rgraphviz",
        "XVector",
        "BiocIO",
        "ProtGenerics",
        "UCSC.utils",
        "txdbmaker",
        "zlibbioc",
        "Rhtslib",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "biomaRt",
        "BiocFileCache"
    ],
    "RepViz": [
        "GenomicRanges",
        "Rsamtools",
        "IRanges",
        "biomaRt",
        "S4Vectors",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "Biobase",
        "KEGGREST",
        "UCSC.utils"
    ],
    "ResidualMatrix": [
        "S4Vectors",
        "DelayedArray",
        "BiocGenerics",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "XVector",
        "zlibbioc"
    ],
    "RESOLVE": [
        "Biostrings",
        "BSgenome",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "MutationalPatterns",
        "S4Vectors",
        "BiocGenerics",
        "XVector",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "UCSC.utils",
        "VariantAnnotation",
        "Biobase",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "MatrixGenerics",
        "SummarizedExperiment",
        "AnnotationDbi",
        "GenomicFeatures",
        "KEGGREST",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "retrofit": [

    ],
    "ReUseData": [
        "Rcwl",
        "RcwlPipelines",
        "BiocFileCache",
        "S4Vectors",
        "basilisk",
        "dir.expiry",
        "basilisk.utils",
        "BiocParallel",
        "BiocGenerics"
    ],
    "rexposome": [
        "Biobase",
        "S4Vectors",
        "BiocGenerics",
        "pcaMethods",
        "impute"
    ],
    "rfaRm": [
        "Biostrings",
        "IRanges",
        "S4Vectors",
        "BiocGenerics",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "Rfastp": [
        "Rhtslib",
        "zlibbioc"
    ],
    "rfPred": [
        "GenomeInfoDb",
        "IRanges",
        "GenomicRanges",
        "Rsamtools",
        "BiocGenerics",
        "S4Vectors",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib"
    ],
    "rGADEM": [
        "Biostrings",
        "IRanges",
        "BSgenome",
        "seqLogo",
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "UCSC.utils",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "SummarizedExperiment",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "rGenomeTracks": [
        "AnnotationHub",
        "BiocGenerics",
        "BiocFileCache",
        "BiocVersion",
        "AnnotationDbi",
        "S4Vectors",
        "Biobase",
        "IRanges",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "RgnTX": [
        "GenomeInfoDb",
        "GenomicFeatures",
        "GenomicRanges",
        "IRanges",
        "regioneR",
        "S4Vectors",
        "BiocGenerics",
        "UCSC.utils",
        "AnnotationDbi",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "BSgenome",
        "Biobase",
        "KEGGREST",
        "BiocIO",
        "Rsamtools",
        "zlibbioc",
        "GenomicAlignments",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "rgoslin": [

    ],
    "RGraph2js": [
        "graph",
        "BiocGenerics"
    ],
    "Rgraphviz": [
        "graph",
        "BiocGenerics"
    ],
    "rGREAT": [
        "GenomicRanges",
        "IRanges",
        "GenomicFeatures",
        "AnnotationDbi",
        "S4Vectors",
        "GenomeInfoDb",
        "BiocGenerics",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "RGSEA": [
        "BiocGenerics"
    ],
    "rgsepd": [
        "DESeq2",
        "goseq",
        "biomaRt",
        "SummarizedExperiment",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocFileCache",
        "GenomicRanges",
        "BiocParallel",
        "MatrixGenerics",
        "rtracklayer",
        "GenomicFeatures",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "txdbmaker",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
    "rhdf5": [
        "Rhdf5lib",
        "rhdf5filters"
    ],
    "rhdf5client": [
        "DelayedArray",
        "BiocGenerics",
        "MatrixGenerics",
        "S4Vectors",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "XVector",
        "zlibbioc"
    ],
    "rhdf5filters": [
        "Rhdf5lib"
    ],
    "Rhdf5lib": [

    ],
    "rhinotypeR": [
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        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
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        "SGSeq",
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "Rsamtools",
        "SummarizedExperiment",
        "AnnotationDbi",
        "Biostrings",
        "GenomicAlignments",
        "GenomicFeatures",
        "rtracklayer",
        "UCSC.utils",
        "Biobase",
        "BiocIO",
        "biomaRt",
        "KEGGREST",
        "BiocFileCache",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "Rhtslib": [
        "zlibbioc"
    ],
    "RiboCrypt": [
        "ORFik",
        "BiocGenerics",
        "BiocParallel",
        "Biostrings",
        "GenomeInfoDb",
        "GenomicFeatures",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "XVector",
        "UCSC.utils",
        "AnnotationDbi",
        "rtracklayer",
        "GenomicAlignments",
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        "BiocFileCache",
        "BSgenome",
        "DESeq2",
        "Rsamtools",
        "SummarizedExperiment",
        "txdbmaker",
        "Biobase",
        "KEGGREST",
        "BiocIO",
        "MatrixGenerics",
        "zlibbioc",
        "Rhtslib",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
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        "GenomicFeatures",
        "GenomicAlignments",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "qvalue",
        "DESeq2",
        "BiocFileCache",
        "BiocGenerics",
        "txdbmaker",
        "SummarizedExperiment",
        "Biobase",
        "BiocParallel",
        "MatrixGenerics",
        "GenomeInfoDb",
        "Biostrings",
        "AnnotationDbi",
        "XVector",
        "rtracklayer",
        "zlibbioc",
        "Rhtslib",
        "UCSC.utils",
        "BiocIO",
        "biomaRt",
        "KEGGREST",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "RiboProfiling": [
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        "BiocGenerics",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "GenomicFeatures",
        "S4Vectors",
        "GenomicAlignments",
        "ggbio",
        "Rsamtools",
        "rtracklayer",
        "XVector",
        "UCSC.utils",
        "SummarizedExperiment",
        "BiocParallel",
        "AnnotationDbi",
        "biovizBase",
        "Biobase",
        "BSgenome",
        "VariantAnnotation",
        "OrganismDbi",
        "ensembldb",
        "AnnotationFilter",
        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "KEGGREST",
        "ProtGenerics",
        "graph",
        "RBGL",
        "txdbmaker",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "biomaRt",
        "BiocFileCache"
    ],
    "ribor": [
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        "S4Vectors",
        "Rhdf5lib",
        "rhdf5filters",
        "BiocGenerics"
    ],
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        "Rsamtools",
        "IRanges",
        "S4Vectors",
        "baySeq",
        "GenomeInfoDb",
        "seqLogo",
        "edgeR",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "limma"
    ],
    "ribosomeProfilingQC": [
        "GenomicRanges",
        "AnnotationDbi",
        "BiocGenerics",
        "Biostrings",
        "BSgenome",
        "EDASeq",
        "GenomicAlignments",
        "GenomicFeatures",
        "GenomeInfoDb",
        "IRanges",
        "motifStack",
        "rtracklayer",
        "Rsamtools",
        "RUVSeq",
        "Rsubread",
        "S4Vectors",
        "XVector",
        "txdbmaker",
        "Biobase",
        "KEGGREST",
        "BiocIO",
        "ShortRead",
        "aroma.light",
        "biomaRt",
        "UCSC.utils",
        "SummarizedExperiment",
        "BiocParallel",
        "TFBSTools",
        "zlibbioc",
        "Rhtslib",
        "edgeR",
        "BiocFileCache",
        "limma",
        "pwalign",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "CNEr",
        "DirichletMultinomial",
        "seqLogo",
        "annotate",
        "SparseArray"
    ],
    "rifi": [
        "S4Vectors",
        "SummarizedExperiment",
        "rtracklayer",
        "GenomicRanges",
        "BiocGenerics",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "BiocParallel",
        "Rhtslib"
    ],
    "rifiComparative": [
        "S4Vectors",
        "rtracklayer",
        "DTA",
        "SummarizedExperiment",
        "GenomicRanges",
        "BiocGenerics",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "BiocParallel",
        "Rhtslib"
    ],
    "RImmPort": [

    ],
    "RITAN": [
        "STRINGdb",
        "BgeeDB",
        "GenomicFeatures",
        "ensembldb",
        "AnnotationFilter",
        "GenomicRanges",
        "topGO",
        "graph",
        "Biobase",
        "zellkonverter",
        "HDF5Array",
        "BiocGenerics",
        "GenomeInfoDb",
        "AnnotationDbi",
        "rtracklayer",
        "S4Vectors",
        "Rsamtools",
        "IRanges",
        "ProtGenerics",
        "Biostrings",
        "XVector",
        "KEGGREST",
        "UCSC.utils",
        "SparseArray",
        "DelayedArray",
        "rhdf5",
        "rhdf5filters",
        "S4Arrays",
        "Rhdf5lib",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "BiocIO",
        "basilisk",
        "SingleCellExperiment",
        "SummarizedExperiment",
        "dir.expiry",
        "basilisk.utils",
        "MatrixGenerics"
    ],
    "RIVER": [
        "Biobase",
        "BiocGenerics"
    ],
    "RJMCMCNucleosomes": [
        "IRanges",
        "GenomicRanges",
        "consensusSeekeR",
        "BiocGenerics",
        "GenomeInfoDb",
        "S4Vectors",
        "BiocParallel",
        "rtracklayer",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "RLassoCox": [

    ],
    "RLMM": [

    ],
    "Rmagpie": [
        "Biobase",
        "BiocGenerics"
    ],
    "RMassBank": [
        "Biobase",
        "ChemmineR",
        "MSnbase",
        "mzR",
        "S4Vectors",
        "BiocGenerics",
        "ProtGenerics",
        "MsCoreUtils",
        "PSMatch",
        "BiocParallel",
        "IRanges",
        "vsn",
        "affy",
        "impute",
        "pcaMethods",
        "mzID",
        "Rhdf5lib",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "QFeatures",
        "limma",
        "MultiAssayExperiment",
        "SummarizedExperiment",
        "AnnotationFilter",
        "GenomicRanges",
        "BiocBaseUtils",
        "DelayedArray",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector"
    ],
    "rmelting": [

    ],
    "Rmmquant": [
        "S4Vectors",
        "GenomicRanges",
        "SummarizedExperiment",
        "DESeq2",
        "apeglm",
        "BiocStyle",
        "IRanges",
        "BiocGenerics",
        "Biobase",
        "BiocParallel",
        "MatrixGenerics",
        "GenomeInfoDb",
        "XVector",
        "AnnotationDbi",
        "S4Arrays",
        "DelayedArray",
        "Rsamtools",
        "GenomicFeatures",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "Biostrings",
        "rtracklayer",
        "zlibbioc",
        "Rhtslib",
        "GenomicAlignments",
        "BiocIO"
    ],
    "rmspc": [
        "rtracklayer",
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "UCSC.utils",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "RNAAgeCalc": [
        "recount",
        "impute",
        "AnnotationDbi",
        "SummarizedExperiment",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "BiocParallel",
        "derfinder",
        "GEOquery",
        "GenomeInfoDb",
        "GenomicRanges",
        "rtracklayer",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "bumphunter",
        "derfinderHelper",
        "GenomicAlignments",
        "GenomicFeatures",
        "GenomicFiles",
        "qvalue",
        "Rsamtools",
        "UCSC.utils",
        "XVector",
        "limma",
        "Biostrings",
        "zlibbioc",
        "BiocIO",
        "VariantAnnotation",
        "Rhtslib",
        "BSgenome"
    ],
    "RNAdecay": [

    ],
    "rnaEditr": [
        "GenomicRanges",
        "IRanges",
        "BiocGenerics",
        "GenomeInfoDb",
        "bumphunter",
        "S4Vectors",
        "limma",
        "GenomicFeatures",
        "AnnotationDbi",
        "UCSC.utils",
        "XVector",
        "Biobase",
        "KEGGREST",
        "Biostrings",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "RNAmodR": [
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "Modstrings",
        "BiocGenerics",
        "Biostrings",
        "BiocParallel",
        "txdbmaker",
        "GenomicFeatures",
        "GenomicAlignments",
        "GenomeInfoDb",
        "rtracklayer",
        "Rsamtools",
        "BSgenome",
        "Gviz",
        "XVector",
        "BiocIO",
        "UCSC.utils",
        "SummarizedExperiment",
        "AnnotationDbi",
        "biomaRt",
        "Biobase",
        "ensembldb",
        "biovizBase",
        "zlibbioc",
        "Rhtslib",
        "KEGGREST",
        "BiocFileCache",
        "VariantAnnotation",
        "AnnotationFilter",
        "ProtGenerics",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "RNAmodR.AlkAnilineSeq": [
        "RNAmodR",
        "S4Vectors",
        "IRanges",
        "BiocGenerics",
        "GenomicRanges",
        "Gviz",
        "GenomeInfoDb",
        "XVector",
        "rtracklayer",
        "biomaRt",
        "AnnotationDbi",
        "Biobase",
        "GenomicFeatures",
        "ensembldb",
        "BSgenome",
        "Biostrings",
        "biovizBase",
        "Rsamtools",
        "GenomicAlignments",
        "Modstrings",
        "BiocParallel",
        "txdbmaker",
        "KEGGREST",
        "BiocFileCache",
        "SummarizedExperiment",
        "VariantAnnotation",
        "AnnotationFilter",
        "BiocIO",
        "ProtGenerics",
        "UCSC.utils",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "RNAmodR.ML": [
        "RNAmodR",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "GenomeInfoDb",
        "XVector",
        "Modstrings",
        "Biostrings",
        "BiocParallel",
        "txdbmaker",
        "GenomicFeatures",
        "GenomicAlignments",
        "rtracklayer",
        "Rsamtools",
        "BSgenome",
        "Gviz",
        "BiocIO",
        "UCSC.utils",
        "SummarizedExperiment",
        "AnnotationDbi",
        "biomaRt",
        "Biobase",
        "ensembldb",
        "biovizBase",
        "zlibbioc",
        "Rhtslib",
        "KEGGREST",
        "BiocFileCache",
        "VariantAnnotation",
        "AnnotationFilter",
        "ProtGenerics",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "RNAmodR.RiboMethSeq": [
        "RNAmodR",
        "S4Vectors",
        "BiocGenerics",
        "IRanges",
        "GenomicRanges",
        "Gviz",
        "GenomeInfoDb",
        "XVector",
        "rtracklayer",
        "biomaRt",
        "AnnotationDbi",
        "Biobase",
        "GenomicFeatures",
        "ensembldb",
        "BSgenome",
        "Biostrings",
        "biovizBase",
        "Rsamtools",
        "GenomicAlignments",
        "Modstrings",
        "BiocParallel",
        "txdbmaker",
        "KEGGREST",
        "BiocFileCache",
        "SummarizedExperiment",
        "VariantAnnotation",
        "AnnotationFilter",
        "BiocIO",
        "ProtGenerics",
        "UCSC.utils",
        "zlibbioc",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "RNAsense": [
        "qvalue",
        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "rnaseqcomp": [

    ],
    "RNAseqCovarImpute": [
        "Biobase",
        "BiocGenerics",
        "BiocParallel",
        "limma",
        "edgeR"
    ],
    "RNASeqPower": [

    ],
    "RnaSeqSampleSize": [
        "biomaRt",
        "edgeR",
        "KEGGREST",
        "recount",
        "SummarizedExperiment",
        "AnnotationDbi",
        "BiocFileCache",
        "limma",
        "Biostrings",
        "BiocParallel",
        "derfinder",
        "GEOquery",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "rtracklayer",
        "S4Vectors",
        "MatrixGenerics",
        "Biobase",
        "BiocGenerics",
        "S4Arrays",
        "DelayedArray",
        "XVector",
        "SparseArray",
        "bumphunter",
        "derfinderHelper",
        "GenomicAlignments",
        "GenomicFeatures",
        "GenomicFiles",
        "qvalue",
        "Rsamtools",
        "UCSC.utils",
        "zlibbioc",
        "BiocIO",
        "VariantAnnotation",
        "Rhtslib",
        "BSgenome"
    ],
    "RnBeads": [
        "BiocGenerics",
        "S4Vectors",
        "GenomicRanges",
        "limma",
        "illuminaio",
        "methylumi",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "Biobase",
        "minfi",
        "SummarizedExperiment",
        "annotate",
        "genefilter",
        "AnnotationDbi",
        "GenomicFeatures",
        "KEGGREST",
        "Biostrings",
        "MatrixGenerics",
        "UCSC.utils",
        "rtracklayer",
        "bumphunter",
        "siggenes",
        "preprocessCore",
        "DelayedMatrixStats",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "S4Arrays",
        "zlibbioc",
        "SparseArray",
        "sparseMatrixStats",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "multtest",
        "Rhtslib"
    ],
    "Rnits": [
        "Biobase",
        "limma",
        "affy",
        "impute",
        "qvalue",
        "BiocGenerics",
        "affyio",
        "preprocessCore",
        "zlibbioc"
    ],
    "roar": [
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "GenomicAlignments",
        "rtracklayer",
        "GenomeInfoDb",
        "UCSC.utils",
        "Biostrings",
        "Rsamtools",
        "BiocParallel",
        "XVector",
        "zlibbioc",
        "BiocIO",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "Rhtslib"
    ],
    "roastgsa": [
        "limma",
        "Biobase",
        "BiocGenerics"
    ],
    "ROC": [

    ],
    "ROCpAI": [
        "SummarizedExperiment",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "RolDE": [
        "ROTS",
        "SummarizedExperiment",
        "qvalue",
        "Biobase",
        "MatrixGenerics",
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "rols": [
        "Biobase",
        "BiocGenerics"
    ],
    "ROntoTools": [
        "graph",
        "KEGGREST",
        "KEGGgraph",
        "Rgraphviz",
        "BiocGenerics",
        "Biostrings",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "ropls": [
        "Biobase",
        "MultiAssayExperiment",
        "MultiDataSet",
        "SummarizedExperiment",
        "BiocGenerics",
        "BiocBaseUtils",
        "DelayedArray",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "limma",
        "MatrixGenerics",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "ROSeq": [
        "edgeR",
        "limma"
    ],
    "ROTS": [
        "Biobase",
        "BiocGenerics"
    ],
    "RPA": [
        "affy",
        "BiocGenerics",
        "BiocStyle",
        "phyloseq",
        "Biobase",
        "affyio",
        "preprocessCore",
        "zlibbioc",
        "biomformat",
        "Biostrings",
        "multtest",
        "rhdf5",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "Rhdf5lib",
        "rhdf5filters"
    ],
    "rprimer": [
        "Biostrings",
        "IRanges",
        "S4Vectors",
        "BiocGenerics",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "RProtoBufLib": [

    ],
    "rpx": [
        "BiocFileCache"
    ],
    "Rqc": [
        "BiocParallel",
        "ShortRead",
        "BiocGenerics",
        "Biostrings",
        "IRanges",
        "S4Vectors",
        "BiocStyle",
        "biovizBase",
        "Rsamtools",
        "GenomicAlignments",
        "GenomicFiles",
        "XVector",
        "GenomeInfoDb",
        "GenomicRanges",
        "SummarizedExperiment",
        "GenomicFeatures",
        "AnnotationDbi",
        "VariantAnnotation",
        "ensembldb",
        "AnnotationFilter",
        "MatrixGenerics",
        "rtracklayer",
        "zlibbioc",
        "Rhtslib",
        "Biobase",
        "pwalign",
        "KEGGREST",
        "ProtGenerics",
        "UCSC.utils",
        "BiocIO",
        "S4Arrays",
        "DelayedArray",
        "BSgenome",
        "SparseArray"
    ],
    "rqt": [
        "SummarizedExperiment",
        "ropls",
        "Biobase",
        "MultiAssayExperiment",
        "MultiDataSet",
        "MatrixGenerics",
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "BiocBaseUtils",
        "limma",
        "multtest",
        "zlibbioc"
    ],
    "rqubic": [
        "Biobase",
        "BiocGenerics"
    ],
    "rRDP": [
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "RRHO": [

    ],
    "rrvgo": [
        "GOSemSim",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
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        "DelayedMatrixStats",
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        "UCSC.utils",
        "zlibbioc"
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        "GenomicRanges",
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        "zlibbioc"
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    "scatterHatch": [

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    "scBFA": [
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        "GenomicRanges",
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        "treeio"
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        "limma",
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        "sparseMatrixStats",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
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        "limma",
        "BiocParallel",
        "hopach",
        "Cepo",
        "GSEABase",
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        "DelayedArray",
        "HDF5Array",
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        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "annotate",
        "graph",
        "AnnotationDbi",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "GenomicRanges",
        "GenomeInfoDb",
        "KEGGREST",
        "UCSC.utils",
        "XVector",
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        "zlibbioc"
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    "sccomp": [
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        "SummarizedExperiment",
        "S4Vectors",
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        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
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        "UCSC.utils",
        "zlibbioc"
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        "flowCore",
        "Biobase",
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        "cytolib",
        "RProtoBufLib",
        "SummarizedExperiment",
        "GenomicRanges",
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        "Rhdf5lib",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
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        "BiocGenerics",
        "BiocParallel",
        "BiocNeighbors",
        "BiocSingular",
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        "GenomicRanges",
        "GenomeInfoDb",
        "Rsamtools",
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        "beachmat",
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        "S4Arrays",
        "SparseArray",
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        "zlibbioc",
        "Rhtslib",
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        "metapod",
        "Biobase"
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        "EBSeq",
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        "SummarizedExperiment",
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    "seahtrue": [

    ],
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        "SummarizedExperiment",
        "ComplexHeatmap",
        "S4Vectors",
        "IRanges",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "segmenter": [
        "ChIPseeker",
        "GenomicRanges",
        "SummarizedExperiment",
        "IRanges",
        "S4Vectors",
        "bamsignals",
        "ComplexHeatmap",
        "BiocGenerics",
        "zlibbioc",
        "Rhtslib",
        "AnnotationDbi",
        "enrichplot",
        "GenomeInfoDb",
        "GenomicFeatures",
        "rtracklayer",
        "XVector",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "DOSE",
        "GOSemSim",
        "ggtree",
        "UCSC.utils",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "BiocParallel",
        "fgsea",
        "qvalue",
        "treeio"
    ],
    "segmentSeq": [
        "baySeq",
        "S4Vectors",
        "GenomicRanges",
        "ShortRead",
        "Rsamtools",
        "IRanges",
        "GenomeInfoDb",
        "edgeR",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "GenomicAlignments",
        "Biobase",
        "pwalign",
        "limma",
        "SummarizedExperiment",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "selectKSigs": [
        "HiLDA",
        "GenomicRanges",
        "S4Vectors",
        "XVector",
        "Biostrings",
        "GenomicFeatures",
        "BiocGenerics",
        "IRanges",
        "GenomeInfoDb",
        "BSgenome",
        "AnnotationDbi",
        "rtracklayer",
        "zlibbioc",
        "Biobase",
        "KEGGREST",
        "BiocIO",
        "Rsamtools",
        "UCSC.utils",
        "GenomicAlignments",
        "SummarizedExperiment",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "SELEX": [
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "SemDist": [
        "AnnotationDbi",
        "annotate",
        "Biobase",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "semisup": [

    ],
    "seq.hotSPOT": [

    ],
    "seq2pathway": [
        "biomaRt",
        "GenomicRanges",
        "AnnotationDbi",
        "BiocFileCache",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "impute",
        "preprocessCore",
        "Biobase",
        "KEGGREST",
        "UCSC.utils",
        "zlibbioc",
        "Biostrings"
    ],
    "seqArchR": [
        "BiocParallel",
        "Biostrings",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "seqArchRplus": [
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "BiocParallel",
        "Biostrings",
        "BSgenome",
        "ChIPseeker",
        "clusterProfiler",
        "GenomeInfoDb",
        "heatmaps",
        "seqArchR",
        "seqPattern",
        "BiocGenerics",
        "XVector",
        "BiocIO",
        "rtracklayer",
        "Rsamtools",
        "AnnotationDbi",
        "enrichplot",
        "GenomicFeatures",
        "DOSE",
        "GOSemSim",
        "qvalue",
        "UCSC.utils",
        "EBImage",
        "Biobase",
        "KEGGREST",
        "fgsea",
        "ggtree",
        "zlibbioc",
        "Rhtslib",
        "GenomicAlignments",
        "SummarizedExperiment",
        "treeio",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "SeqArray": [
        "gdsfmt",
        "IRanges",
        "GenomicRanges",
        "GenomeInfoDb",
        "Biostrings",
        "S4Vectors",
        "BiocGenerics",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "seqCAT": [
        "GenomicRanges",
        "VariantAnnotation",
        "GenomeInfoDb",
        "IRanges",
        "rtracklayer",
        "S4Vectors",
        "SummarizedExperiment",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "AnnotationDbi",
        "BSgenome",
        "GenomicFeatures",
        "Rhtslib",
        "KEGGREST",
        "SparseArray",
        "BiocParallel"
    ],
    "seqcombo": [

    ],
    "SeqGate": [
        "S4Vectors",
        "SummarizedExperiment",
        "GenomicRanges",
        "BiocGenerics",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "zlibbioc"
    ],
    "SeqGSEA": [
        "Biobase",
        "DESeq2",
        "biomaRt",
        "BiocGenerics",
        "AnnotationDbi",
        "BiocFileCache",
        "S4Vectors",
        "IRanges",
        "GenomicRanges",
        "SummarizedExperiment",
        "BiocParallel",
        "MatrixGenerics",
        "KEGGREST",
        "GenomeInfoDb",
        "XVector",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "Biostrings",
        "zlibbioc"
    ],
    "seqLogo": [

    ],
    "seqPattern": [
        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "seqsetvis": [
        "GenomeInfoDb",
        "GenomicAlignments",
        "GenomicRanges",
        "IRanges",
        "limma",
        "Rsamtools",
        "rtracklayer",
        "S4Vectors",
        "BiocGenerics",
        "UCSC.utils",
        "SummarizedExperiment",
        "Biostrings",
        "BiocParallel",
        "XVector",
        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "SeqSQC": [
        "ExperimentHub",
        "SNPRelate",
        "GenomicRanges",
        "gdsfmt",
        "IRanges",
        "S4Vectors",
        "BiocGenerics",
        "AnnotationHub",
        "BiocFileCache",
        "GenomeInfoDb",
        "XVector",
        "BiocVersion",
        "AnnotationDbi",
        "UCSC.utils",
        "zlibbioc",
        "Biobase",
        "KEGGREST",
        "Biostrings"
    ],
    "seqTools": [
        "zlibbioc"
    ],
    "SeqVarTools": [
        "SeqArray",
        "Biobase",
        "BiocGenerics",
        "gdsfmt",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "GenomeInfoDb",
        "XVector",
        "Biostrings",
        "UCSC.utils",
        "zlibbioc"
    ],
    "sesame": [
        "BiocParallel",
        "GenomicRanges",
        "IRanges",
        "preprocessCore",
        "S4Vectors",
        "BiocFileCache",
        "GenomeInfoDb",
        "SummarizedExperiment",
        "BiocGenerics",
        "UCSC.utils",
        "XVector",
        "ExperimentHub",
        "AnnotationHub",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "BiocVersion",
        "AnnotationDbi",
        "SparseArray",
        "zlibbioc",
        "KEGGREST",
        "Biostrings"
    ],
    "SEtools": [
        "SummarizedExperiment",
        "sechm",
        "BiocParallel",
        "DESeq2",
        "S4Vectors",
        "edgeR",
        "sva",
        "IRanges",
        "GenomicRanges",
        "BiocGenerics",
        "Biobase",
        "MatrixGenerics",
        "limma",
        "ComplexHeatmap",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "genefilter",
        "SparseArray",
        "AnnotationDbi",
        "annotate",
        "UCSC.utils",
        "XVector",
        "KEGGREST",
        "zlibbioc",
        "Biostrings"
    ],
    "sevenbridges": [
        "S4Vectors",
        "BiocGenerics"
    ],
    "sevenC": [
        "InteractionSet",
        "rtracklayer",
        "BiocGenerics",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "S4Vectors",
        "UCSC.utils",
        "XVector",
        "SummarizedExperiment",
        "Biostrings",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "BiocParallel",
        "Rhtslib",
        "MatrixGenerics",
        "Biobase",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "SGCP": [
        "annotate",
        "SummarizedExperiment",
        "genefilter",
        "GOstats",
        "Rgraphviz",
        "graph",
        "AnnotationDbi",
        "Biobase",
        "BiocGenerics",
        "MatrixGenerics",
        "Category",
        "RBGL",
        "AnnotationForge",
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "GSEABase",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "SGSeq": [
        "IRanges",
        "GenomicRanges",
        "Rsamtools",
        "SummarizedExperiment",
        "AnnotationDbi",
        "BiocGenerics",
        "Biostrings",
        "GenomicAlignments",
        "GenomicFeatures",
        "GenomeInfoDb",
        "S4Vectors",
        "rtracklayer",
        "Biobase",
        "KEGGREST",
        "XVector",
        "UCSC.utils",
        "BiocParallel",
        "zlibbioc",
        "Rhtslib",
        "BiocIO",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "SharedObject": [
        "BiocGenerics"
    ],
    "shiny.gosling": [

    ],
    "shinyepico": [
        "GenomicRanges",
        "limma",
        "minfi",
        "rtracklayer",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "SummarizedExperiment",
        "Biostrings",
        "bumphunter",
        "Biobase",
        "siggenes",
        "preprocessCore",
        "illuminaio",
        "DelayedMatrixStats",
        "genefilter",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "GenomicFeatures",
        "AnnotationDbi",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "annotate",
        "UCSC.utils",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "Rhtslib",
        "multtest",
        "KEGGREST"
    ],
    "shinyMethyl": [
        "Biobase",
        "BiocGenerics",
        "MatrixGenerics",
        "minfi",
        "GenomicRanges",
        "SummarizedExperiment",
        "Biostrings",
        "bumphunter",
        "S4Vectors",
        "GenomeInfoDb",
        "IRanges",
        "siggenes",
        "limma",
        "preprocessCore",
        "illuminaio",
        "DelayedMatrixStats",
        "genefilter",
        "GEOquery",
        "DelayedArray",
        "HDF5Array",
        "BiocParallel",
        "XVector",
        "GenomicFeatures",
        "AnnotationDbi",
        "S4Arrays",
        "SparseArray",
        "sparseMatrixStats",
        "annotate",
        "UCSC.utils",
        "rhdf5",
        "rhdf5filters",
        "Rhdf5lib",
        "multtest",
        "KEGGREST",
        "rtracklayer",
        "zlibbioc",
        "Rsamtools",
        "GenomicAlignments",
        "BiocIO",
        "Rhtslib"
    ],
    "ShortRead": [
        "BiocGenerics",
        "BiocParallel",
        "Biostrings",
        "Rsamtools",
        "GenomicAlignments",
        "Biobase",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "GenomicRanges",
        "pwalign",
        "XVector",
        "Rhtslib",
        "UCSC.utils",
        "SummarizedExperiment",
        "zlibbioc",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "SIAMCAT": [
        "phyloseq",
        "Biobase",
        "BiocGenerics",
        "biomformat",
        "Biostrings",
        "multtest",
        "rhdf5",
        "S4Vectors",
        "IRanges",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc"
    ],
    "SICtools": [
        "Rsamtools",
        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "UCSC.utils"
    ],
    "SigCheck": [
        "MLInterfaces",
        "Biobase",
        "BiocParallel",
        "BiocGenerics",
        "annotate",
        "genefilter",
        "SummarizedExperiment",
        "AnnotationDbi",
        "MatrixGenerics",
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "KEGGREST",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "zlibbioc"
    ],
    "sigFeature": [
        "biocViews",
        "SummarizedExperiment",
        "BiocParallel",
        "Biobase",
        "graph",
        "RBGL",
        "MatrixGenerics",
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "SigFuge": [
        "GenomicRanges",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "XVector",
        "UCSC.utils",
        "zlibbioc"
    ],
    "siggenes": [
        "Biobase",
        "multtest",
        "BiocGenerics"
    ],
    "sights": [
        "qvalue"
    ],
    "signatureSearch": [
        "SummarizedExperiment",
        "AnnotationDbi",
        "ExperimentHub",
        "HDF5Array",
        "fgsea",
        "qvalue",
        "BiocParallel",
        "clusterProfiler",
        "DOSE",
        "rhdf5",
        "GSEABase",
        "DelayedArray",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "enrichplot",
        "GOSemSim",
        "MatrixGenerics",
        "S4Arrays",
        "SparseArray",
        "AnnotationHub",
        "BiocFileCache",
        "annotate",
        "graph",
        "rhdf5filters",
        "Rhdf5lib",
        "GenomicRanges",
        "GenomeInfoDb",
        "BiocVersion",
        "ggtree",
        "UCSC.utils",
        "XVector",
        "Biostrings",
        "treeio",
        "zlibbioc"
    ],
    "signeR": [
        "VariantAnnotation",
        "BiocGenerics",
        "Biostrings",
        "GenomeInfoDb",
        "GenomicRanges",
        "IRanges",
        "BiocFileCache",
        "rtracklayer",
        "BSgenome",
        "S4Vectors",
        "XVector",
        "BiocIO",
        "Rsamtools",
        "UCSC.utils",
        "Biobase",
        "zlibbioc",
        "GenomicAlignments",
        "MatrixGenerics",
        "SummarizedExperiment",
        "AnnotationDbi",
        "GenomicFeatures",
        "Rhtslib",
        "KEGGREST",
        "BiocParallel",
        "S4Arrays",
        "DelayedArray",
        "SparseArray"
    ],
    "SigsPack": [
        "Biobase",
        "BSgenome",
        "VariantAnnotation",
        "Biostrings",
        "GenomeInfoDb",
        "GenomicRanges",
        "rtracklayer",
        "SummarizedExperiment",
        "BiocGenerics",
        "S4Vectors",
        "IRanges",
        "XVector",
        "BiocIO",
        "Rsamtools",
        "UCSC.utils",
        "zlibbioc",
        "GenomicAlignments",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "AnnotationDbi",
        "GenomicFeatures",
        "Rhtslib",
        "KEGGREST",
        "SparseArray",
        "BiocParallel"
    ],
    "sigsquared": [
        "Biobase",
        "BiocGenerics"
    ],
    "SIM": [
        "globaltest",
        "quantsmooth",
        "Biobase",
        "AnnotationDbi",
        "annotate",
        "BiocGenerics",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "SIMAT": [
        "mzR",
        "Biobase",
        "BiocGenerics",
        "ProtGenerics",
        "Rhdf5lib"
    ],
    "SimBu": [
        "basilisk",
        "BiocParallel",
        "phyloseq",
        "sparseMatrixStats",
        "SummarizedExperiment",
        "dir.expiry",
        "basilisk.utils",
        "Biobase",
        "BiocGenerics",
        "biomformat",
        "Biostrings",
        "multtest",
        "MatrixGenerics",
        "GenomicRanges",
        "S4Vectors",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "DelayedArray",
        "rhdf5",
        "XVector",
        "SparseArray",
        "UCSC.utils",
        "Rhdf5lib",
        "rhdf5filters",
        "zlibbioc"
    ],
    "SIMD": [
        "edgeR",
        "methylMnM",
        "limma"
    ],
    "SimFFPE": [
        "Biostrings",
        "GenomicRanges",
        "IRanges",
        "Rsamtools",
        "BiocGenerics",
        "S4Vectors",
        "XVector",
        "GenomeInfoDb",
        "zlibbioc",
        "BiocParallel",
        "Rhtslib",
        "UCSC.utils"
    ],
    "similaRpeak": [

    ],
    "SIMLR": [

    ],
    "simona": [
        "S4Vectors",
        "ComplexHeatmap",
        "IRanges",
        "BiocGenerics"
    ],
    "simPIC": [
        "SingleCellExperiment",
        "BiocGenerics",
        "SummarizedExperiment",
        "S4Vectors",
        "scuttle",
        "BiocParallel",
        "GenomicRanges",
        "S4Arrays",
        "MatrixGenerics",
        "SparseArray",
        "DelayedArray",
        "beachmat",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "assorthead",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "simpleSeg": [
        "BiocParallel",
        "EBImage",
        "S4Vectors",
        "SummarizedExperiment",
        "cytomapper",
        "SingleCellExperiment",
        "SpatialExperiment",
        "HDF5Array",
        "DelayedArray",
        "rhdf5",
        "BiocGenerics",
        "MatrixGenerics",
        "GenomicRanges",
        "Biobase",
        "IRanges",
        "GenomeInfoDb",
        "S4Arrays",
        "SparseArray",
        "UCSC.utils",
        "XVector",
        "rhdf5filters",
        "Rhdf5lib",
        "BiocFileCache",
        "zlibbioc"
    ],
    "simplifyEnrichment": [
        "simona",
        "ComplexHeatmap",
        "AnnotationDbi",
        "BiocGenerics",
        "Biobase",
        "IRanges",
        "S4Vectors",
        "KEGGREST",
        "Biostrings",
        "XVector",
        "GenomeInfoDb",
        "UCSC.utils",
        "zlibbioc"
    ],
    "sincell": [

    ],
    "SingleCellAlleleExperiment": [
        "SingleCellExperiment",
        "SummarizedExperiment",
        "BiocParallel",
        "DelayedArray",
        "S4Vectors",
        "BiocGenerics",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "GenomicRanges",
        "Biobase",
        "GenomeInfoDb",
        "UCSC.utils",
        "XVector",
        "zlibbioc"
    ],
    "SingleCellExperiment": [
        "SummarizedExperiment",
        "S4Vectors",
        "BiocGenerics",
        "GenomicRanges",
        "DelayedArray",
        "MatrixGenerics",
        "IRanges",
        "S4Arrays",
        "SparseArray",
        "GenomeInfoDb",
        "XVector",
        "Biobase",
        "UCSC.utils",
        "zlibbioc"
    ],
    "SingleCellSignalR": [
        "limma",
        "edgeR",
        "multtest",
        "scran",
        "BiocGenerics",
        "Biobase",
        "SingleCellExperiment",
        "scuttle",
        "SummarizedExperiment",
        "S4Vectors",
        "BiocParallel",
        "MatrixGenerics",
        "S4Arrays",
        "DelayedArray",
        "BiocSingular",
        "bluster",
        "metapod",
        "beachmat",
        "SparseArray",
        "assorthead",
        "ScaledMatrix",
        "BiocNeighbors",
        "IRanges",
        "GenomicRanges",
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        "GenomeInfoDb",
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        "rhdf5filters",
        "zlibbioc"
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        "GenomicAlignments",
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        "SparseArray"
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        "preprocessCore",
        "zlibbioc"
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        "SparseArray"
    ],
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        "KEGGREST",
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        "SparseArray"
    ],
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        "BiocParallel",
        "SingleCellExperiment",
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        "S4Vectors",
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        "GenomicRanges",
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        "SparseArray",
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        "XVector",
        "Biobase",
        "UCSC.utils",
        "zlibbioc"
    ],
    "wateRmelon": [
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        "limma",
        "methylumi",
        "lumi",
        "ROC",
        "illuminaio",
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        "Biostrings",
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        "S4Arrays",
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        "SparseArray"
    ],
    "weaver": [

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    "webbioc": [
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        "affy",
        "multtest",
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        "KEGGREST",
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        "UCSC.utils"
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        "DelayedArray",
        "DelayedMatrixStats",
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        "topconfects",
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        "UCSC.utils",
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        "zlibbioc"
    ],
    "widgetTools": [

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        "S4Vectors",
        "IRanges",
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        "BiocGenerics",
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        "DelayedArray",
        "SparseArray"
    ],
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        "GenomeInfoDb",
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}