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Repository files navigation

Summary

0 Bioconductor sotware binaries built

0 Other dependency binaries built

0 failed packages

2232 unclaimed packages

Failed (0)

Package Status BBS Status Log Known Error

Unclaimed (2232)

Package Status Blocked By
a4 Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, MatrixGenerics, S4Vectors, UCSC.utils, XVector, a4Base, a4Classif, a4Core, a4Preproc, a4Reporting, annaffy, annotate, genefilter, limma, multtest, zlibbioc.
a4Base Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, MatrixGenerics, S4Vectors, UCSC.utils, XVector, a4Core, a4Preproc, annaffy, annotate, genefilter, limma, multtest, zlibbioc.
a4Classif Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, a4Core, a4Preproc.
a4Core Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
a4Preproc Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
a4Reporting Unclaimed
ABarray Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, multtest.
abseqR Unclaimed Incomplete Bioc dependencies: BiocParallel, BiocStyle.
ABSSeq Unclaimed Incomplete Bioc dependencies: limma.
acde Unclaimed
ACE Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, CGHbase, CGHcall, DNAcopy, GenomeInfoDb, GenomicRanges, IRanges, QDNAseq, Rhtslib, Rsamtools, S4Vectors, UCSC.utils, XVector, impute, limma, marray, zlibbioc.
aCGH Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, multtest.
ACME Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
ADaCGH2 Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, DNAcopy, GLAD, GenomeInfoDb, IRanges, KEGGREST, MatrixGenerics, S4Vectors, UCSC.utils, XVector, aCGH, affy, affyio, annotate, genefilter, limma, multtest, preprocessCore, tilingArray, vsn, zlibbioc.
ADAM Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
ADAMgui Unclaimed Incomplete Bioc dependencies: ADAM, AnnotationDbi, Biobase, BiocGenerics, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
ADAPT Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, Rhdf5lib, S4Vectors, UCSC.utils, XVector, biomformat, multtest, phyloseq, rhdf5, rhdf5filters, zlibbioc.
adductomicsR Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, Biobase, BiocFileCache, BiocGenerics, BiocVersion, Biostrings, ExperimentHub, GenomeInfoDb, IRanges, KEGGREST, ProtGenerics, Rhdf5lib, S4Vectors, UCSC.utils, XVector, mzR, zlibbioc.
ADImpute Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
adSplit Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, multtest, zlibbioc.
adverSCarial Unclaimed Incomplete Bioc dependencies: BiocGenerics, DelayedArray, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, XVector, zlibbioc.
AffiXcan Unclaimed Incomplete Bioc dependencies: Biobase, BiocBaseUtils, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, MultiAssayExperiment, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
affxparser Unclaimed
affy Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, affyio, preprocessCore, zlibbioc.
affycomp Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
affyContam Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, affy, affyio, preprocessCore, zlibbioc.
affycoretools Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, AnnotationForge, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, Category, DESeq2, DelayedArray, GOstats, GSEABase, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, Glimma, IRanges, KEGGREST, MatrixGenerics, OrganismDbi, ProtGenerics, RBGL, ReportingTools, Rgraphviz, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, affy, affyio, annotate, biomaRt, biovizBase, edgeR, ensembldb, gcrma, genefilter, ggbio, graph, limma, oligoClasses, preprocessCore, rtracklayer, txdbmaker, zlibbioc.
affyILM Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors, UCSC.utils, XVector, affxparser, affy, affyio, gcrma, preprocessCore, zlibbioc.
affyio Unclaimed Incomplete Bioc dependencies: zlibbioc.
affylmGUI Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, affy, affyPLM, affyio, gcrma, limma, preprocessCore, zlibbioc.
affyPLM Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors, UCSC.utils, XVector, affy, affyio, gcrma, preprocessCore, zlibbioc.
AffyRNADegradation Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, affy, affyio, preprocessCore, zlibbioc.
AGDEX Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GSEABase, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, annotate, graph, zlibbioc.
aggregateBioVar Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
agilp Unclaimed
AgiMicroRna Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, AnnotationForge, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, Category, DESeq2, DelayedArray, GOstats, GSEABase, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, Glimma, IRanges, KEGGREST, MatrixGenerics, OrganismDbi, ProtGenerics, RBGL, ReportingTools, Rgraphviz, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, affy, affycoretools, affyio, annotate, biomaRt, biovizBase, edgeR, ensembldb, gcrma, genefilter, ggbio, graph, limma, oligoClasses, preprocessCore, rtracklayer, txdbmaker, zlibbioc.
AHMassBank Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationForge, AnnotationHub, AnnotationHubData, Biobase, BiocBaseUtils, BiocCheck, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocVersion, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, OrganismDbi, RBGL, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, biocViews, biomaRt, graph, rtracklayer, txdbmaker, zlibbioc.
AIMS Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
airpart Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, ComplexHeatmap, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, apeglm, assorthead, beachmat, scater, scuttle, zlibbioc.
alabaster Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocBaseUtils, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, BumpyMatrix, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, HDF5Array, IRanges, KEGGREST, MatrixGenerics, MultiAssayExperiment, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SpatialExperiment, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, alabaster.base, alabaster.bumpy, alabaster.mae, alabaster.matrix, alabaster.ranges, alabaster.sce, alabaster.schemas, alabaster.se, alabaster.spatial, alabaster.string, alabaster.vcf, rhdf5, rhdf5filters, rtracklayer, zlibbioc.
alabaster.base Unclaimed Incomplete Bioc dependencies: BiocGenerics, Rhdf5lib, S4Vectors, alabaster.schemas, rhdf5, rhdf5filters.
alabaster.bumpy Unclaimed Incomplete Bioc dependencies: BiocGenerics, BumpyMatrix, IRanges, Rhdf5lib, S4Vectors, alabaster.base, alabaster.schemas, rhdf5, rhdf5filters.
alabaster.files Unclaimed Incomplete Bioc dependencies: BiocGenerics, BiocParallel, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rhdf5lib, Rhtslib, Rsamtools, S4Vectors, UCSC.utils, XVector, alabaster.base, alabaster.schemas, rhdf5, rhdf5filters, zlibbioc.
alabaster.mae Unclaimed Incomplete Bioc dependencies: Biobase, BiocBaseUtils, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, HDF5Array, IRanges, MatrixGenerics, MultiAssayExperiment, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, alabaster.base, alabaster.matrix, alabaster.ranges, alabaster.schemas, alabaster.se, rhdf5, rhdf5filters, zlibbioc.
alabaster.matrix Unclaimed Incomplete Bioc dependencies: BiocGenerics, DelayedArray, HDF5Array, IRanges, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, XVector, alabaster.base, alabaster.schemas, rhdf5, rhdf5filters, zlibbioc.
alabaster.ranges Unclaimed Incomplete Bioc dependencies: BiocGenerics, GenomeInfoDb, GenomicRanges, IRanges, Rhdf5lib, S4Vectors, UCSC.utils, XVector, alabaster.base, alabaster.schemas, rhdf5, rhdf5filters, zlibbioc.
alabaster.sce Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, HDF5Array, IRanges, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, alabaster.base, alabaster.matrix, alabaster.ranges, alabaster.schemas, alabaster.se, rhdf5, rhdf5filters, zlibbioc.
alabaster.schemas Unclaimed
alabaster.se Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, HDF5Array, IRanges, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, alabaster.base, alabaster.matrix, alabaster.ranges, alabaster.schemas, rhdf5, rhdf5filters, zlibbioc.
alabaster.spatial Unclaimed Incomplete Bioc dependencies: Biobase, BiocFileCache, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, HDF5Array, IRanges, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SpatialExperiment, SummarizedExperiment, UCSC.utils, XVector, alabaster.base, alabaster.matrix, alabaster.ranges, alabaster.sce, alabaster.schemas, alabaster.se, rhdf5, rhdf5filters, zlibbioc.
alabaster.string Unclaimed Incomplete Bioc dependencies: BiocGenerics, Biostrings, GenomeInfoDb, IRanges, Rhdf5lib, S4Vectors, UCSC.utils, XVector, alabaster.base, alabaster.schemas, rhdf5, rhdf5filters, zlibbioc.
alabaster.vcf Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, HDF5Array, IRanges, KEGGREST, MatrixGenerics, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, alabaster.base, alabaster.matrix, alabaster.ranges, alabaster.schemas, alabaster.se, alabaster.string, rhdf5, rhdf5filters, rtracklayer, zlibbioc.
ALDEx2 Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, multtest, zlibbioc.
alevinQC Unclaimed Incomplete Bioc dependencies: tximport.
AllelicImbalance Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, Gviz, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biomaRt, biovizBase, ensembldb, rtracklayer, zlibbioc.
AlphaBeta Unclaimed Incomplete Bioc dependencies: BiocParallel.
AlphaMissenseR Unclaimed Incomplete Bioc dependencies: BiocBaseUtils, BiocFileCache.
AlpsNMR Unclaimed Incomplete Bioc dependencies: BiocParallel, MassSpecWavelet, impute, mixOmics.
altcdfenvs Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors, UCSC.utils, XVector, affy, affyio, graph, hypergraph, makecdfenv, preprocessCore, zlibbioc.
AMARETTO Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, Biobase, BiocBaseUtils, BiocFileCache, BiocGenerics, BiocVersion, Biostrings, ComplexHeatmap, DelayedArray, ExperimentHub, GenomeInfoDb, GenomicRanges, HDF5Array, IRanges, KEGGREST, MatrixGenerics, MultiAssayExperiment, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, impute, limma, rhdf5, rhdf5filters, zlibbioc.
AMOUNTAIN Unclaimed
amplican Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, ShortRead, SparseArray, SummarizedExperiment, UCSC.utils, XVector, pwalign, zlibbioc.
Anaquin Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, DESeq2, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, qvalue, zlibbioc.
ANCOMBC Unclaimed
AneuFinder Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, DNAcopy, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, bamsignals, zlibbioc.
ANF Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
animalcules Unclaimed Incomplete Bioc dependencies: Biobase, BiocBaseUtils, BiocGenerics, BiocParallel, DESeq2, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, MultiAssayExperiment, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, limma, zlibbioc.
annaffy Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, zlibbioc.
annmap Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Vectors, UCSC.utils, XVector, annotate, genefilter, zlibbioc.
annotate Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, zlibbioc.
AnnotationDbi Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, zlibbioc.
AnnotationFilter Unclaimed Incomplete Bioc dependencies: BiocGenerics, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
AnnotationForge Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, zlibbioc.
AnnotationHub Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocFileCache, BiocGenerics, BiocVersion, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, zlibbioc.
AnnotationHubData Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationForge, AnnotationHub, Biobase, BiocBaseUtils, BiocCheck, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocVersion, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, OrganismDbi, RBGL, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, biocViews, biomaRt, graph, rtracklayer, txdbmaker, zlibbioc.
annotationTools Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
annotatr Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocVersion, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, regioneR, rtracklayer, zlibbioc.
anota Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, multtest, qvalue.
anota2seq Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, DESeq2, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, edgeR, limma, multtest, qvalue, zlibbioc.
antiProfiles Unclaimed
AnVIL Unclaimed Incomplete Bioc dependencies: AnVILBase, BiocBaseUtils.
AnVILAz Unclaimed Incomplete Bioc dependencies: AnVILBase, BiocBaseUtils.
AnVILBase Unclaimed
AnVILBilling Unclaimed
AnVILGCP Unclaimed Incomplete Bioc dependencies: AnVILBase, BiocBaseUtils.
AnVILPublish Unclaimed Incomplete Bioc dependencies: AnVIL, AnVILBase, AnVILGCP, BiocBaseUtils.
AnVILWorkflow Unclaimed Incomplete Bioc dependencies: AnVIL, AnVILBase, AnVILGCP, BiocBaseUtils.
APAlyzer Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DESeq2, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, HybridMTest, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, Rsubread, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, rtracklayer, zlibbioc.
apComplex Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, RBGL, Rgraphviz, S4Vectors, UCSC.utils, XVector, graph, zlibbioc.
apeglm Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
APL Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, graph, topGO, zlibbioc.
appreci8R Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocVersion, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, HDF5Array, IRanges, KEGGREST, MatrixGenerics, OrganismDbi, RBGL, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biomaRt, graph, rhdf5, rhdf5filters, rtracklayer, txdbmaker, zlibbioc.
aroma.light Unclaimed
ArrayExpress Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, affxparser, affyio, limma, oligo, oligoClasses, preprocessCore, zlibbioc.
arrayMvout Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, DelayedMatrixStats, GEOquery, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, HDF5Array, IRanges, KEGGREST, MatrixGenerics, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, affy, affyContam, affyio, annotate, bumphunter, genefilter, illuminaio, limma, lumi, mdqc, methylumi, minfi, multtest, parody, preprocessCore, rhdf5, rhdf5filters, rtracklayer, siggenes, sparseMatrixStats, zlibbioc.
arrayQuality Unclaimed Incomplete Bioc dependencies: limma, marray.
arrayQualityMetrics Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BeadDataPackR, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, S4Vectors, UCSC.utils, XVector, affy, affyPLM, affyio, annotate, beadarray, gcrma, genefilter, illuminaio, limma, preprocessCore, vsn, zlibbioc.
ARRmNormalization Unclaimed
artMS Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, MSstats, MSstatsConvert, S4Vectors, UCSC.utils, XVector, limma, marray, preprocessCore, zlibbioc.
ASAFE Unclaimed
ASEB Unclaimed
ASGSCA Unclaimed
ASICS Unclaimed Incomplete Bioc dependencies: Biobase, BiocBaseUtils, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, MultiAssayExperiment, MultiDataSet, PepsNMR, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, limma, ropls, zlibbioc.
ASpli Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocStyle, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, Gviz, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biomaRt, biovizBase, edgeR, ensembldb, limma, rtracklayer, txdbmaker, zlibbioc.
AssessORF Unclaimed Incomplete Bioc dependencies: BiocGenerics, Biostrings, DECIPHER, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
ASSET Unclaimed
ASSIGN Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, GenomeInfoDb, IRanges, KEGGREST, MatrixGenerics, S4Vectors, UCSC.utils, XVector, annotate, edgeR, genefilter, limma, sva, zlibbioc.
assorthead Unclaimed
ASURAT Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, ComplexHeatmap, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
ATACseqQC Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, AnnotationHub, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocVersion, Biostrings, CNEr, ChIPpeakAnno, DelayedArray, DirichletMultinomial, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, HDF5Array, IRanges, InteractionSet, KEGGREST, MatrixGenerics, ProtGenerics, RBGL, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, TFBSTools, UCSC.utils, XVector, annotate, biomaRt, edgeR, ensembldb, graph, limma, motifStack, multtest, pwalign, regioneR, rhdf5, rhdf5filters, rtracklayer, seqLogo, universalmotif, zlibbioc.
ATACseqTFEA Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, CNEr, DelayedArray, DirichletMultinomial, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, TFBSTools, UCSC.utils, XVector, annotate, limma, motifmatchr, pwalign, rtracklayer, seqLogo, zlibbioc.
atena Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocVersion, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, sparseMatrixStats, zlibbioc.
atSNP Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, CNEr, DelayedArray, DirichletMultinomial, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, TFBSTools, UCSC.utils, XVector, annotate, motifStack, pwalign, rtracklayer, seqLogo, zlibbioc.
attract Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationForge, Biobase, BiocGenerics, Biostrings, Category, GOstats, GSEABase, GenomeInfoDb, IRanges, KEGGREST, MatrixGenerics, RBGL, Rgraphviz, S4Vectors, UCSC.utils, XVector, annotate, genefilter, graph, limma, zlibbioc.
AUCell Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, DelayedArray, DelayedMatrixStats, GSEABase, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, graph, sparseMatrixStats, zlibbioc.
autonomics Unclaimed Incomplete Bioc dependencies: Biobase, BiocBaseUtils, BiocFileCache, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, MultiAssayExperiment, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, affy, affyio, edgeR, limma, preprocessCore, vsn, zlibbioc.
AWFisher Unclaimed Incomplete Bioc dependencies: edgeR, limma.
awst Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
BaalChIP Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
bacon Unclaimed Incomplete Bioc dependencies: BiocParallel.
BADER Unclaimed
BadRegionFinder Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biomaRt, rtracklayer, zlibbioc.
BAGS Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
ballgown Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, edgeR, genefilter, limma, rtracklayer, sva, zlibbioc.
bambu Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
bamsignals Unclaimed Incomplete Bioc dependencies: BiocGenerics, GenomeInfoDb, GenomicRanges, IRanges, Rhtslib, S4Vectors, UCSC.utils, XVector, zlibbioc.
BANDITS Unclaimed Incomplete Bioc dependencies: BiocGenerics, BiocParallel, DRIMSeq, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, edgeR, limma, zlibbioc.
bandle Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, Biobase, BiocBaseUtils, BiocFileCache, BiocGenerics, BiocParallel, BiocStyle, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MLInterfaces, MSnbase, MatrixGenerics, MsCoreUtils, MultiAssayExperiment, PSMatch, ProtGenerics, QFeatures, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, affy, affyio, annotate, biomaRt, genefilter, impute, limma, mzID, mzR, pRoloc, pcaMethods, preprocessCore, vsn, zlibbioc.
Banksy Unclaimed Incomplete Bioc dependencies: Biobase, BiocFileCache, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SpatialExperiment, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
banocc Unclaimed
barcodetrackR Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
basecallQC Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, ShortRead, SparseArray, SummarizedExperiment, UCSC.utils, XVector, pwalign, zlibbioc.
BaseSpaceR Unclaimed
Basic4Cseq Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
BASiCS Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, bluster, edgeR, limma, metapod, scran, scuttle, zlibbioc.
BASiCStan Unclaimed Incomplete Bioc dependencies: BASiCS, Biobase, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, DelayedArray, DelayedMatrixStats, GenomeInfoDb, GenomicRanges, HDF5Array, IRanges, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, bluster, edgeR, glmGamPoi, limma, metapod, rhdf5, rhdf5filters, scran, scuttle, sparseMatrixStats, zlibbioc.
BasicSTARRseq Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
basilisk Unclaimed Incomplete Bioc dependencies: basilisk.utils, dir.expiry.
basilisk.utils Unclaimed Incomplete Bioc dependencies: dir.expiry.
batchelor Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, DelayedArray, DelayedMatrixStats, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, ResidualMatrix, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, scuttle, sparseMatrixStats, zlibbioc.
BatchQC Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, Biostrings, DESeq2, DelayedArray, EBSeq, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, assorthead, beachmat, bluster, edgeR, genefilter, limma, metapod, scran, scuttle, sva, zlibbioc.
BayesKnockdown Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
BayesSpace Unclaimed Incomplete Bioc dependencies: Biobase, BiocFileCache, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, bluster, edgeR, limma, metapod, rhdf5, rhdf5filters, scater, scran, scuttle, zlibbioc.
bayNorm Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
baySeq Unclaimed Incomplete Bioc dependencies: BiocGenerics, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, edgeR, limma, zlibbioc.
BBCAnalyzer Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, rtracklayer, zlibbioc.
BCRANK Unclaimed Incomplete Bioc dependencies: BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
bcSeq Unclaimed Incomplete Bioc dependencies: BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
beachmat Unclaimed Incomplete Bioc dependencies: BiocGenerics, DelayedArray, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, XVector, assorthead, zlibbioc.
beachmat.hdf5 Unclaimed Incomplete Bioc dependencies: BiocGenerics, DelayedArray, HDF5Array, IRanges, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, XVector, assorthead, beachmat, rhdf5, rhdf5filters, zlibbioc.
beadarray Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BeadDataPackR, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, illuminaio, limma, zlibbioc.
BeadDataPackR Unclaimed
BEAT Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, ShortRead, SparseArray, SummarizedExperiment, UCSC.utils, XVector, pwalign, rtracklayer, zlibbioc.
BEclear Unclaimed Incomplete Bioc dependencies: BiocParallel.
beer Unclaimed Incomplete Bioc dependencies: Biobase, BiocFileCache, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, PhIPData, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, edgeR, limma, zlibbioc.
benchdamic Unclaimed Incomplete Bioc dependencies: ALDEx2, ANCOMBC, AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, DESeq2, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MAST, Maaslin2, MatrixGenerics, NOISeq, Rhdf5lib, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, TreeSummarizedExperiment, UCSC.utils, Wrench, XVector, annotate, biomformat, dearseq, edgeR, genefilter, limma, metagenomeSeq, microbiome, mixOmics, multtest, phyloseq, rhdf5, rhdf5filters, treeio, zinbwave, zlibbioc.
BERT Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, edgeR, genefilter, limma, sva, zlibbioc.
betaHMM Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
bettr Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, ComplexHeatmap, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
BG2 Unclaimed
BgeeCall Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, biomaRt, rhdf5, rhdf5filters, rtracklayer, txdbmaker, tximport, zlibbioc.
BgeeDB Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, HDF5Array, IRanges, KEGGREST, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, basilisk, basilisk.utils, dir.expiry, graph, rhdf5, rhdf5filters, topGO, zellkonverter, zlibbioc.
BicARE Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GSEABase, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, annotate, graph, multtest, zlibbioc.
BiFET Unclaimed Incomplete Bioc dependencies: BiocGenerics, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
BiGGR Unclaimed Incomplete Bioc dependencies: BiocGenerics, Rgraphviz, graph, hyperdraw, hypergraph, rsbml.
bigmelon Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, DelayedMatrixStats, GEOquery, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, HDF5Array, IRanges, KEGGREST, MatrixGenerics, ROC, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, affy, affyio, annotate, bumphunter, gdsfmt, genefilter, illuminaio, limma, lumi, methylumi, minfi, multtest, preprocessCore, rhdf5, rhdf5filters, rtracklayer, siggenes, sparseMatrixStats, wateRmelon, zlibbioc.
BindingSiteFinder Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, ComplexHeatmap, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
bioassayR Unclaimed Incomplete Bioc dependencies: BiocGenerics, ChemmineR.
Biobase Unclaimed Incomplete Bioc dependencies: BiocGenerics.
biobroom Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
biobtreeR Unclaimed
bioCancer Unclaimed Incomplete Bioc dependencies: AnVIL, AnVILBase, AnnotationDbi, Biobase, BiocBaseUtils, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DOSE, DelayedArray, EBarrays, GOSemSim, GenomeInfoDb, GenomicAlignments, GenomicDataCommons, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, MultiAssayExperiment, RTCGAToolbox, RaggedExperiment, ReactomePA, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, TCGAutils, UCSC.utils, XVector, cBioPortalData, clusterProfiler, enrichplot, fgsea, geNetClassifier, ggtree, graph, graphite, minet, qvalue, rtracklayer, treeio, zlibbioc.
BioCartaImage Unclaimed
BiocBaseUtils Unclaimed
BiocBook Unclaimed Incomplete Bioc dependencies: BiocGenerics.
BiocCheck Unclaimed Incomplete Bioc dependencies: Biobase, BiocBaseUtils, BiocFileCache, BiocGenerics, RBGL, biocViews, graph.
BiocFHIR Unclaimed Incomplete Bioc dependencies: BiocBaseUtils, BiocGenerics, graph.
BiocFileCache Unclaimed
BiocGenerics Unclaimed
biocGraph Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, Rgraphviz, S4Vectors, UCSC.utils, XVector, annotate, geneplotter, graph, zlibbioc.
BiocHubsShiny Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, Biobase, BiocFileCache, BiocGenerics, BiocVersion, Biostrings, ExperimentHub, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, zlibbioc.
BiocIO Unclaimed Incomplete Bioc dependencies: BiocGenerics, S4Vectors.
BiocNeighbors Unclaimed Incomplete Bioc dependencies: assorthead.
BioCor Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, GSEABase, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, annotate, graph, zlibbioc.
BiocParallel Unclaimed
BiocPkgTools Unclaimed Incomplete Bioc dependencies: Biobase, BiocFileCache, BiocGenerics, RBGL, biocViews, graph.
biocroxytest Unclaimed
BiocSet Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, zlibbioc.
BiocSingular Unclaimed Incomplete Bioc dependencies: BiocGenerics, BiocParallel, DelayedArray, IRanges, MatrixGenerics, S4Arrays, S4Vectors, ScaledMatrix, SparseArray, XVector, assorthead, beachmat, zlibbioc.
BiocSklearn Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, basilisk, basilisk.utils, dir.expiry, zlibbioc.
BiocStyle Unclaimed
biocthis Unclaimed
BiocVersion Unclaimed
biocViews Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, RBGL, graph.
BiocWorkflowTools Unclaimed Incomplete Bioc dependencies: BiocStyle.
biodb Unclaimed Incomplete Bioc dependencies: BiocFileCache.
biodbChebi Unclaimed Incomplete Bioc dependencies: BiocFileCache, biodb.
biodbHmdb Unclaimed Incomplete Bioc dependencies: BiocFileCache, biodb.
biodbNcbi Unclaimed Incomplete Bioc dependencies: BiocFileCache, biodb.
biodbNci Unclaimed Incomplete Bioc dependencies: BiocFileCache, biodb.
biodbUniprot Unclaimed Incomplete Bioc dependencies: BiocFileCache, biodb.
bioDist Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
BioGA Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocStyle, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, RBGL, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, biocViews, graph, zlibbioc.
biomaRt Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocFileCache, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, zlibbioc.
biomformat Unclaimed Incomplete Bioc dependencies: Rhdf5lib, rhdf5, rhdf5filters.
BioMVCClass Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, MVCClass, Rgraphviz, graph.
biomvRCNS Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, Gviz, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biomaRt, biovizBase, ensembldb, rtracklayer, zlibbioc.
BioNAR Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, fgsea, graph, impute, preprocessCore, zlibbioc.
BioNERO Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, ComplexHeatmap, DelayedArray, GENIE3, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, edgeR, genefilter, impute, limma, minet, preprocessCore, sva, zlibbioc.
BioNet Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, RBGL, S4Vectors, UCSC.utils, XVector, graph, zlibbioc.
BioQC Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, edgeR, limma.
biosigner Unclaimed Incomplete Bioc dependencies: Biobase, BiocBaseUtils, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, MultiAssayExperiment, MultiDataSet, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, limma, ropls, zlibbioc.
Biostrings Unclaimed Incomplete Bioc dependencies: BiocGenerics, GenomeInfoDb, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
BioTIP Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, bluster, edgeR, limma, metapod, scran, scuttle, zlibbioc.
biotmle Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, limma, zlibbioc.
biovizBase Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, ensembldb, rtracklayer, zlibbioc.
BiRewire Unclaimed
biscuiteer Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocVersion, Biostrings, CGHbase, CGHcall, DNAcopy, DelayedArray, DelayedMatrixStats, ExperimentHub, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, HDF5Array, IRanges, KEGGREST, MatrixGenerics, OrganismDbi, QDNAseq, RBGL, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, annotatr, assorthead, beachmat, biomaRt, bsseq, bumphunter, dmrseq, graph, impute, limma, marray, regioneR, rhdf5, rhdf5filters, rtracklayer, sparseMatrixStats, txdbmaker, zlibbioc.
BiSeq Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, globaltest, rtracklayer, zlibbioc.
blacksheepr Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocFileCache, BiocGenerics, BiocParallel, Biostrings, ComplexHeatmap, DESeq2, DEXSeq, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, biomaRt, genefilter, geneplotter, zlibbioc.
blima Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BeadDataPackR, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, beadarray, illuminaio, limma, zlibbioc.
BLMA Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, KEGGgraph, PADOG, ROntoTools, Rgraphviz, S4Vectors, UCSC.utils, XVector, graph, limma, zlibbioc.
BloodGen3Module Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, Biobase, BiocFileCache, BiocGenerics, BiocVersion, Biostrings, ComplexHeatmap, DelayedArray, ExperimentHub, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, limma, preprocessCore, zlibbioc.
bluster Unclaimed Incomplete Bioc dependencies: BiocGenerics, BiocNeighbors, BiocParallel, S4Vectors, assorthead.
bnbc Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, EBImage, GenomeInfoDb, GenomicRanges, HiCBricks, IRanges, KEGGREST, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, edgeR, genefilter, limma, preprocessCore, rhdf5, rhdf5filters, sva, zlibbioc.
bnem Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, CellNOptR, GenomeInfoDb, IRanges, KEGGREST, Linnorm, MatrixGenerics, RBGL, Rgraphviz, S4Vectors, UCSC.utils, XVector, affy, affyio, annotate, edgeR, epiNEM, genefilter, graph, limma, minet, mnem, preprocessCore, sva, vsn, zlibbioc.
BOBaFIT Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, OrganismDbi, ProtGenerics, RBGL, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biomaRt, biovizBase, ensembldb, ggbio, graph, plyranges, rtracklayer, txdbmaker, zlibbioc.
borealis Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DSS, DelayedArray, DelayedMatrixStats, GenomeInfoDb, GenomicAlignments, GenomicRanges, HDF5Array, IRanges, MatrixGenerics, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, bsseq, limma, rhdf5, rhdf5filters, rtracklayer, sparseMatrixStats, zlibbioc.
BPRMeth Unclaimed Incomplete Bioc dependencies: BiocGenerics, BiocStyle, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
BRAIN Unclaimed Incomplete Bioc dependencies: BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
branchpointer Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, biomaRt, rtracklayer, zlibbioc.
breakpointR Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
brendaDb Unclaimed Incomplete Bioc dependencies: BiocFileCache, BiocParallel.
BREW3R.r Unclaimed Incomplete Bioc dependencies: BiocGenerics, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
BridgeDbR Unclaimed
broadSeq Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, BiocStyle, Biostrings, ComplexHeatmap, DELocal, DESeq2, DOSE, DelayedArray, EBSeq, GOSemSim, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, NOISeq, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, clusterProfiler, edgeR, enrichplot, fgsea, genefilter, ggtree, limma, qvalue, sechm, treeio, zlibbioc.
BrowserViz Unclaimed Incomplete Bioc dependencies: BiocGenerics.
BSgenome Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
BSgenomeForge Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
bsseq Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, DelayedMatrixStats, GenomeInfoDb, GenomicAlignments, GenomicRanges, HDF5Array, IRanges, MatrixGenerics, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, limma, rhdf5, rhdf5filters, rtracklayer, sparseMatrixStats, zlibbioc.
BubbleTree Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, BiocStyle, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biovizBase, ensembldb, limma, rtracklayer, zlibbioc.
BufferedMatrix Unclaimed
BufferedMatrixMethods Unclaimed Incomplete Bioc dependencies: BufferedMatrix.
bugsigdbr Unclaimed Incomplete Bioc dependencies: BiocFileCache.
BUMHMM Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
bumphunter Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, limma, rtracklayer, zlibbioc.
BumpyMatrix Unclaimed Incomplete Bioc dependencies: BiocGenerics, IRanges, S4Vectors.
BUS Unclaimed Incomplete Bioc dependencies: minet.
BUScorrect Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
BUSpaRse Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, biomaRt, ensembldb, plyranges, rtracklayer, zlibbioc.
BUSseq Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
CaDrA Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
CAEN Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
CAFE Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, OrganismDbi, ProtGenerics, RBGL, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, affy, affyio, annotate, biomaRt, biovizBase, ensembldb, ggbio, graph, preprocessCore, rtracklayer, txdbmaker, zlibbioc.
CAGEfightR Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicInteractions, GenomicRanges, Gviz, IRanges, InteractionSet, KEGGREST, MatrixGenerics, ProtGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biomaRt, biovizBase, ensembldb, rtracklayer, zlibbioc.
cageminer Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, BioNERO, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, ComplexHeatmap, DelayedArray, GENIE3, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, OrganismDbi, ProtGenerics, RBGL, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, annotate, biomaRt, biovizBase, edgeR, ensembldb, genefilter, ggbio, graph, impute, limma, minet, preprocessCore, rtracklayer, sva, txdbmaker, zlibbioc.
CAGEr Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocBaseUtils, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, CAGEfightR, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicInteractions, GenomicRanges, Gviz, IRanges, InteractionSet, KEGGREST, MatrixGenerics, MultiAssayExperiment, ProtGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biomaRt, biovizBase, ensembldb, rtracklayer, zlibbioc.
calm Unclaimed
CAMERA Unclaimed Incomplete Bioc dependencies: AnnotationFilter, Biobase, BiocBaseUtils, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MSnbase, MassSpecWavelet, MatrixGenerics, MetaboCoreUtils, MsCoreUtils, MsExperiment, MsFeatures, MultiAssayExperiment, PSMatch, ProtGenerics, QFeatures, RBGL, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, Spectra, SummarizedExperiment, UCSC.utils, XVector, affy, affyio, graph, impute, limma, mzID, mzR, pcaMethods, preprocessCore, vsn, xcms, zlibbioc.
CaMutQC Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, ComplexHeatmap, DNAcopy, DOSE, GOSemSim, GenomeInfoDb, IRanges, KEGGREST, MesKit, Rhtslib, S4Vectors, UCSC.utils, XVector, clusterProfiler, enrichplot, fgsea, ggtree, maftools, qvalue, treeio, zlibbioc.
canceR Unclaimed Incomplete Bioc dependencies: AnVIL, AnVILBase, AnnotationDbi, Biobase, BiocBaseUtils, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, Category, DelayedArray, EBarrays, GSEABase, GenomeInfoDb, GenomicAlignments, GenomicDataCommons, GenomicFeatures, GenomicRanges, Heatplus, IRanges, KEGGREST, MatrixGenerics, MultiAssayExperiment, RBGL, RTCGAToolbox, RaggedExperiment, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, TCGAutils, UCSC.utils, XVector, annotate, biomaRt, cBioPortalData, geNetClassifier, genefilter, graph, hopach, limma, minet, phenoTest, rtracklayer, zlibbioc.
cancerclass Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
cardelino Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, ggtree, rtracklayer, snpStats, treeio, zlibbioc.
Cardinal Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, CardinalIO, EBImage, ProtGenerics, S4Vectors, matter.
CardinalIO Unclaimed Incomplete Bioc dependencies: BiocGenerics, BiocParallel, ProtGenerics, S4Vectors, matter.
CARNIVAL Unclaimed
casper Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, EBarrays, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, gaga, limma, rtracklayer, zlibbioc.
CATALYST Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, ComplexHeatmap, ConsensusClusterPlus, DelayedArray, FlowSOM, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, RProtoBufLib, Rhdf5lib, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, cytolib, flowCore, scater, scuttle, zlibbioc.
Category Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GSEABase, GenomeInfoDb, IRanges, KEGGREST, MatrixGenerics, RBGL, S4Vectors, UCSC.utils, XVector, annotate, genefilter, graph, zlibbioc.
categoryCompare Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationForge, Biobase, BiocGenerics, Biostrings, Category, GOstats, GSEABase, GenomeInfoDb, IRanges, KEGGREST, MatrixGenerics, RBGL, RCy3, Rgraphviz, S4Vectors, UCSC.utils, XVector, annotate, genefilter, graph, zlibbioc.
CatsCradle Unclaimed Incomplete Bioc dependencies: Biobase, BiocFileCache, BiocGenerics, DelayedArray, EBImage, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SpatialExperiment, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
CausalR Unclaimed
cbaf Unclaimed Incomplete Bioc dependencies: AnVIL, AnVILBase, AnnotationDbi, Biobase, BiocBaseUtils, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicDataCommons, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, MultiAssayExperiment, RTCGAToolbox, RaggedExperiment, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, TCGAutils, UCSC.utils, XVector, annotate, cBioPortalData, genefilter, rtracklayer, zlibbioc.
CBEA Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, BiocSet, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, TreeSummarizedExperiment, UCSC.utils, XVector, treeio, zlibbioc.
cBioPortalData Unclaimed Incomplete Bioc dependencies: AnVIL, AnVILBase, AnnotationDbi, Biobase, BiocBaseUtils, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicDataCommons, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, MultiAssayExperiment, RTCGAToolbox, RaggedExperiment, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, TCGAutils, UCSC.utils, XVector, rtracklayer, zlibbioc.
CBNplot Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, Biobase, BiocFileCache, BiocGenerics, BiocParallel, BiocVersion, Biostrings, DOSE, ExperimentHub, GOSemSim, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, clusterProfiler, enrichplot, fgsea, ggtree, graph, graphite, qvalue, treeio, zlibbioc.
cbpManager Unclaimed Incomplete Bioc dependencies: basilisk, basilisk.utils, dir.expiry.
ccfindR Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
ccImpute Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, sparseMatrixStats, zlibbioc.
ccmap Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, zlibbioc.
CCPlotR Unclaimed Incomplete Bioc dependencies: BiocGenerics, ComplexHeatmap, IRanges, S4Vectors.
CCPROMISE Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GSEABase, GenomeInfoDb, IRanges, KEGGREST, PROMISE, S4Vectors, UCSC.utils, XVector, annotate, graph, zlibbioc.
ccrepe Unclaimed
CDI Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
celaref Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MAST, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
celda Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, ComplexHeatmap, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, bluster, edgeR, limma, metapod, scater, scran, scuttle, zlibbioc.
CellBarcode Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, ShortRead, SparseArray, SummarizedExperiment, UCSC.utils, XVector, pwalign, zlibbioc.
cellbaseR Unclaimed Incomplete Bioc dependencies: BiocGenerics, BiocParallel, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rhtslib, Rsamtools, S4Vectors, UCSC.utils, XVector, zlibbioc.
CellBench Unclaimed Incomplete Bioc dependencies: Biobase, BiocFileCache, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
CelliD Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, fgsea, scater, scuttle, zlibbioc.
cellity Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, graph, topGO, zlibbioc.
CellMapper Unclaimed Incomplete Bioc dependencies: BiocGenerics, S4Vectors.
cellmigRation Unclaimed
CellMixS Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, scater, scuttle, zlibbioc.
CellNOptR Unclaimed Incomplete Bioc dependencies: BiocGenerics, RBGL, Rgraphviz, graph.
cellscape Unclaimed
CellScore Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
CellTrails Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
cellxgenedp Unclaimed
CEMiTool Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, DOSE, GOSemSim, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, clusterProfiler, enrichplot, fgsea, ggtree, impute, preprocessCore, qvalue, treeio, zlibbioc.
censcyt Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, ComplexHeatmap, ConsensusClusterPlus, DelayedArray, FlowSOM, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, RProtoBufLib, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, cytolib, diffcyt, edgeR, flowCore, limma, zlibbioc.
Cepo Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, DelayedMatrixStats, GSEABase, GenomeInfoDb, GenomicRanges, HDF5Array, IRanges, KEGGREST, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, graph, rhdf5, rhdf5filters, sparseMatrixStats, zlibbioc.
ceRNAnetsim Unclaimed
CeTF Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, ComplexHeatmap, DESeq2, DOSE, DelayedArray, GOSemSim, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, RCy3, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, clusterProfiler, enrichplot, fgsea, ggtree, graph, qvalue, snpStats, treeio, zlibbioc.
CexoR Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, genomation, impute, rtracklayer, seqPattern, zlibbioc.
CFAssay Unclaimed
cfdnakit Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, CGHbase, CGHcall, DNAcopy, GenomeInfoDb, GenomicRanges, IRanges, QDNAseq, Rhtslib, Rsamtools, S4Vectors, UCSC.utils, XVector, aroma.light, impute, limma, marray, zlibbioc.
cfDNAPro Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, plyranges, rtracklayer, zlibbioc.
cfTools Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, Biobase, BiocFileCache, BiocGenerics, BiocVersion, Biostrings, ExperimentHub, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, basilisk, basilisk.utils, dir.expiry, zlibbioc.
CGEN Unclaimed
CGHbase Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, limma, marray.
CGHcall Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, CGHbase, DNAcopy, impute, limma, marray.
cghMCR Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, CNTools, DNAcopy, GenomeInfoDb, IRanges, KEGGREST, MatrixGenerics, S4Vectors, UCSC.utils, XVector, annotate, genefilter, limma, zlibbioc.
CGHnormaliter Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, CGHbase, CGHcall, DNAcopy, impute, limma, marray.
CGHregions Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, CGHbase, limma, marray.
ChAMP Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, AnnotationHub, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocVersion, Biostrings, DMRcate, DNAcopy, DelayedArray, DelayedMatrixStats, ExperimentHub, GEOquery, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, Gviz, HDF5Array, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, ROC, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, affy, affyio, annotate, assorthead, beachmat, biomaRt, biovizBase, bsseq, bumphunter, edgeR, ensembldb, genefilter, globaltest, goseq, illuminaio, impute, limma, lumi, marray, methylumi, minfi, missMethyl, multtest, preprocessCore, qvalue, rhdf5, rhdf5filters, rtracklayer, siggenes, sparseMatrixStats, sva, txdbmaker, wateRmelon, zlibbioc.
ChemmineOB Unclaimed Incomplete Bioc dependencies: BiocGenerics, zlibbioc.
ChemmineR Unclaimed Incomplete Bioc dependencies: BiocGenerics.
CHETAH Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, bioDist, zlibbioc.
Chicago Unclaimed
chihaya Unclaimed Incomplete Bioc dependencies: BiocGenerics, DelayedArray, HDF5Array, IRanges, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, XVector, rhdf5, rhdf5filters, zlibbioc.
chimeraviz Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocStyle, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, Gviz, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rgraphviz, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biomaRt, biovizBase, ensembldb, graph, rtracklayer, zlibbioc.
ChIPanalyser Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
ChIPComp Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, limma, rtracklayer, zlibbioc.
chipenrich Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
ChIPexoQual Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biovizBase, ensembldb, rtracklayer, zlibbioc.
ChIPpeakAnno Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, InteractionSet, KEGGREST, MatrixGenerics, ProtGenerics, RBGL, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, biomaRt, ensembldb, graph, multtest, pwalign, regioneR, rtracklayer, universalmotif, zlibbioc.
ChIPQC Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DESeq2, DelayedArray, DiffBind, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, GreyListChIP, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, ShortRead, SparseArray, SummarizedExperiment, UCSC.utils, XVector, apeglm, chipseq, limma, pwalign, rtracklayer, systemPipeR, zlibbioc.
ChIPseeker Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DOSE, DelayedArray, GOSemSim, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, enrichplot, fgsea, ggtree, qvalue, rtracklayer, treeio, zlibbioc.
chipseq Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, ShortRead, SparseArray, SummarizedExperiment, UCSC.utils, XVector, pwalign, zlibbioc.
ChIPseqR Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, HilbertVis, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, ShortRead, SparseArray, SummarizedExperiment, UCSC.utils, XVector, pwalign, zlibbioc.
ChIPsim Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, ShortRead, SparseArray, SummarizedExperiment, UCSC.utils, XVector, pwalign, zlibbioc.
ChIPXpress Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, Biostrings, DelayedArray, GEOquery, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, affxparser, affy, affyio, frma, limma, oligo, oligoClasses, preprocessCore, zlibbioc.
chopsticks Unclaimed
chromDraw Unclaimed Incomplete Bioc dependencies: BiocGenerics, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
ChromHeatMap Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, rtracklayer, zlibbioc.
chromPlot Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocFileCache, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, biomaRt, zlibbioc.
ChromSCape Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocIO, BiocNeighbors, BiocParallel, BiocSingular, Biostrings, ConsensusClusterPlus, DelayedArray, DelayedMatrixStats, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, ResidualMatrix, Rhtslib, Rsamtools, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, batchelor, beachmat, bluster, edgeR, limma, metapod, rtracklayer, scater, scran, scuttle, sparseMatrixStats, zlibbioc.
chromstaR Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, bamsignals, zlibbioc.
chromVAR Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, CNEr, DelayedArray, DirichletMultinomial, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, TFBSTools, UCSC.utils, XVector, annotate, pwalign, rtracklayer, seqLogo, zlibbioc.
CHRONOS Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocFileCache, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, RBGL, S4Vectors, UCSC.utils, XVector, biomaRt, graph, zlibbioc.
cicero Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, Gviz, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, RBGL, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biocViews, biomaRt, biovizBase, ensembldb, graph, limma, monocle, rtracklayer, zlibbioc.
CIMICE Unclaimed Incomplete Bioc dependencies: DNAcopy, Rhtslib, maftools, zlibbioc.
CINdex Unclaimed Incomplete Bioc dependencies: BiocGenerics, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
circRNAprofiler Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocVersion, Biostrings, DESeq2, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, edgeR, gwascat, limma, rtracklayer, snpStats, universalmotif, zlibbioc.
CircSeqAlignTk Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rbowtie2, Rhisat2, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SGSeq, ShortRead, SparseArray, SummarizedExperiment, UCSC.utils, XVector, biomaRt, pwalign, rtracklayer, txdbmaker, zlibbioc.
cisPath Unclaimed
CiteFuse Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, bluster, edgeR, limma, metapod, rhdf5, rhdf5filters, scran, scuttle, zlibbioc.
ClassifyR Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocBaseUtils, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, MultiAssayExperiment, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, dcanr, genefilter, zlibbioc.
cleanUpdTSeq Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
CleanUpRNAseq Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DESeq2, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhtslib, Rsamtools, Rsubread, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, edgeR, ensembldb, genefilter, limma, qsmooth, rtracklayer, sva, tximport, zlibbioc.
cleaver Unclaimed Incomplete Bioc dependencies: BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
clevRvis Unclaimed
clippda Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, limma.
clipper Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, KEGGgraph, MatrixGenerics, Rgraphviz, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, graph, qpgraph, rtracklayer, zlibbioc.
cliProfiler Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
cliqueMS Unclaimed Incomplete Bioc dependencies: AnnotationFilter, Biobase, BiocBaseUtils, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MSnbase, MassSpecWavelet, MatrixGenerics, MetaboCoreUtils, MsCoreUtils, MsExperiment, MsFeatures, MultiAssayExperiment, PSMatch, ProtGenerics, QFeatures, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, Spectra, SummarizedExperiment, UCSC.utils, XVector, affy, affyio, impute, limma, mzID, mzR, pcaMethods, preprocessCore, vsn, xcms, zlibbioc.
Clomial Unclaimed
clst Unclaimed Incomplete Bioc dependencies: ROC.
clstutils Unclaimed Incomplete Bioc dependencies: ROC, clst.
CluMSID Unclaimed Incomplete Bioc dependencies: AnnotationFilter, Biobase, BiocBaseUtils, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MSnbase, MatrixGenerics, MsCoreUtils, MultiAssayExperiment, PSMatch, ProtGenerics, QFeatures, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, affy, affyio, impute, limma, mzID, mzR, pcaMethods, preprocessCore, vsn, zlibbioc.
ClustAll Unclaimed Incomplete Bioc dependencies: BiocGenerics, ComplexHeatmap, IRanges, S4Vectors.
clustComp Unclaimed
clusterExperiment Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, BiocSingular, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, HDF5Array, IRanges, KEGGREST, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, assorthead, beachmat, edgeR, genefilter, limma, mbkmeans, rhdf5, rhdf5filters, zinbwave, zlibbioc.
ClusterFoldSimilarity Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
ClusterJudge Unclaimed
clusterProfiler Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, DOSE, GOSemSim, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, enrichplot, fgsea, ggtree, qvalue, treeio, zlibbioc.
clusterSeq Unclaimed Incomplete Bioc dependencies: BiocGenerics, BiocParallel, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, baySeq, edgeR, limma, zlibbioc.
ClusterSignificance Unclaimed
clusterStab Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
clustifyr Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, fgsea, zlibbioc.
ClustIRR Unclaimed Incomplete Bioc dependencies: BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors, UCSC.utils, XVector, pwalign, zlibbioc.
CMA Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
cmapR Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, RProtoBufLib, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, cytolib, flowCore, rhdf5, rhdf5filters, zlibbioc.
cn.farms Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, Biostrings, DNAcopy, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, affxparser, affyio, oligo, oligoClasses, preprocessCore, zlibbioc.
cn.mops Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rhtslib, Rsamtools, S4Vectors, UCSC.utils, XVector, zlibbioc.
CNAnorm Unclaimed Incomplete Bioc dependencies: DNAcopy.
CNEr Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, pwalign, rtracklayer, zlibbioc.
CNORdt Unclaimed Incomplete Bioc dependencies: BiocGenerics, CellNOptR, RBGL, Rgraphviz, graph.
CNORfeeder Unclaimed Incomplete Bioc dependencies: BiocGenerics, CellNOptR, RBGL, Rgraphviz, graph.
CNORfuzzy Unclaimed Incomplete Bioc dependencies: BiocGenerics, CellNOptR, RBGL, Rgraphviz, graph.
CNORode Unclaimed Incomplete Bioc dependencies: BiocGenerics, CellNOptR, RBGL, Rgraphviz, graph.
CNTools Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, MatrixGenerics, S4Vectors, UCSC.utils, XVector, annotate, genefilter, zlibbioc.
CNVfilteR Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, CopyNumberPlots, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, bamsignals, biovizBase, cn.mops, ensembldb, karyoploteR, regioneR, rhdf5, rhdf5filters, rtracklayer, zlibbioc.
cnvGSA Unclaimed Incomplete Bioc dependencies: BiocGenerics, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
CNViz Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, CopyNumberPlots, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, bamsignals, biovizBase, cn.mops, ensembldb, karyoploteR, regioneR, rhdf5, rhdf5filters, rtracklayer, zlibbioc.
CNVMetrics Unclaimed Incomplete Bioc dependencies: BiocGenerics, BiocParallel, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
CNVPanelizer Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, NOISeq, Rhtslib, Rsamtools, S4Vectors, UCSC.utils, XVector, zlibbioc.
CNVRanger Unclaimed Incomplete Bioc dependencies: Biobase, BiocBaseUtils, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GDSArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, RaggedExperiment, S4Arrays, S4Vectors, SNPRelate, SeqArray, SparseArray, SummarizedExperiment, UCSC.utils, XVector, edgeR, gdsfmt, limma, zlibbioc.
CNVrd2 Unclaimed Incomplete Bioc dependencies: AnnotationDbi, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DNAcopy, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, rtracklayer, zlibbioc.
CoCiteStats Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, zlibbioc.
COCOA Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, ComplexHeatmap, DelayedArray, DelayedMatrixStats, GenomeInfoDb, GenomicAlignments, GenomicRanges, HDF5Array, IRanges, MIRA, MatrixGenerics, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, bsseq, limma, rhdf5, rhdf5filters, rtracklayer, sparseMatrixStats, zlibbioc.
codelink Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, annotate, limma, zlibbioc.
CODEX Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
CoGAPS Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, fgsea, rhdf5, rhdf5filters, zlibbioc.
cogena Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
cogeqc Unclaimed Incomplete Bioc dependencies: BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors, UCSC.utils, XVector, ggtree, treeio, zlibbioc.
Cogito Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
coGPS Unclaimed
cola Unclaimed Incomplete Bioc dependencies: BiocGenerics, ComplexHeatmap, IRanges, S4Vectors, impute.
comapr Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, Gviz, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biomaRt, biovizBase, ensembldb, rtracklayer, zlibbioc.
combi Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, biomformat, limma, multtest, phyloseq, rhdf5, rhdf5filters, zlibbioc.
coMethDMR Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocVersion, Biostrings, DelayedArray, ExperimentHub, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, bumphunter, limma, rtracklayer, zlibbioc.
COMPASS Unclaimed Incomplete Bioc dependencies: BiocStyle.
compcodeR Unclaimed Incomplete Bioc dependencies: edgeR, limma.
compEpiTools Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, Gviz, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, biomaRt, biovizBase, ensembldb, graph, limma, marray, methylPipe, rtracklayer, topGO, zlibbioc.
ComplexHeatmap Unclaimed Incomplete Bioc dependencies: BiocGenerics, IRanges, S4Vectors.
CompoundDb Unclaimed Incomplete Bioc dependencies: AnnotationFilter, Biobase, BiocGenerics, BiocParallel, ChemmineR, GenomeInfoDb, GenomicRanges, IRanges, MetaboCoreUtils, MsCoreUtils, ProtGenerics, S4Vectors, Spectra, UCSC.utils, XVector, zlibbioc.
ComPrAn Unclaimed
compSPOT Unclaimed
concordexR Unclaimed Incomplete Bioc dependencies: Biobase, BiocFileCache, BiocGenerics, BiocNeighbors, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SpatialExperiment, SummarizedExperiment, UCSC.utils, XVector, assorthead, bluster, sparseMatrixStats, zlibbioc.
condiments Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocNeighbors, BiocParallel, BiocSingular, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, TrajectoryUtils, UCSC.utils, XVector, assorthead, beachmat, distinct, limma, scater, scuttle, slingshot, zlibbioc.
CONFESS Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, EBImage, RProtoBufLib, Rgraphviz, Rhdf5lib, S4Vectors, SamSPECTRAL, cytolib, flowClust, flowCore, flowMeans, flowMerge, flowPeaks, graph, limma.
consensus Unclaimed
ConsensusClusterPlus Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
consensusDE Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, Biostrings, DESeq2, DelayedArray, EDASeq, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, RUVSeq, Rhtslib, Rsamtools, S4Arrays, S4Vectors, ShortRead, SparseArray, SummarizedExperiment, UCSC.utils, XVector, aroma.light, biomaRt, edgeR, ensembldb, limma, pcaMethods, pwalign, rtracklayer, zlibbioc.
consensusSeekeR Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
consICA Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, graph, topGO, zlibbioc.
CONSTANd Unclaimed
conumee Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DNAcopy, DelayedArray, DelayedMatrixStats, GEOquery, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, HDF5Array, IRanges, KEGGREST, MatrixGenerics, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, bumphunter, genefilter, illuminaio, limma, minfi, multtest, preprocessCore, rhdf5, rhdf5filters, rtracklayer, siggenes, sparseMatrixStats, zlibbioc.
convert Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, limma, marray.
copa Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
CopyNumberPlots Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, bamsignals, biovizBase, cn.mops, ensembldb, karyoploteR, regioneR, rhdf5, rhdf5filters, rtracklayer, zlibbioc.
coRdon Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
CoreGx Unclaimed Incomplete Bioc dependencies: Biobase, BiocBaseUtils, BiocGenerics, BiocParallel, BumpyMatrix, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, MultiAssayExperiment, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, fgsea, limma, marray, piano, zlibbioc.
Cormotif Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, affy, affyio, limma, preprocessCore, zlibbioc.
corral Unclaimed Incomplete Bioc dependencies: Biobase, BiocBaseUtils, BiocGenerics, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, MultiAssayExperiment, S4Arrays, S4Vectors, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.
coseq Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, DESeq2, DelayedArray, GenomeInfoDb, GenomicRanges, HTSFilter, IRanges, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, edgeR, limma, zlibbioc.
CoSIA Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, Biobase, BiocFileCache, BiocGenerics, BiocVersion, Biostrings, ExperimentHub, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, annotationTools, biomaRt, zlibbioc.
cosmiq Unclaimed Incomplete Bioc dependencies: AnnotationFilter, Biobase, BiocBaseUtils, BiocGenerics, BiocParallel, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, MSnbase, MassSpecWavelet, MatrixGenerics, MetaboCoreUtils, MsCoreUtils, MsExperiment, MsFeatures, MultiAssayExperiment, PSMatch, ProtGenerics, QFeatures, Rhdf5lib, S4Arrays, S4Vectors, SparseArray, Spectra, SummarizedExperiment, UCSC.utils, XVector, affy, affyio, impute, limma, mzID, mzR, pcaMethods, preprocessCore, vsn, xcms, zlibbioc.
cosmosR Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, CARNIVAL, GSEABase, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, annotate, decoupleR, graph, zlibbioc.
COSNet Unclaimed
COTAN Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocParallel, BiocSingular, ComplexHeatmap, DelayedArray, DelayedMatrixStats, GenomeInfoDb, GenomicRanges, IRanges, MatrixGenerics, PCAtools, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, sparseMatrixStats, zlibbioc.
countsimQC Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, DESeq2, DelayedArray, GenomeInfoDb, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, edgeR, genefilter, limma, zlibbioc.
covEB Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics.
CoverageView Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rtracklayer, zlibbioc.
covRNA Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, KEGGREST, MatrixGenerics, S4Vectors, UCSC.utils, XVector, annotate, genefilter, zlibbioc.
cpvSNP Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GSEABase, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, annotate, graph, rtracklayer, zlibbioc.
cqn Unclaimed
CRImage Unclaimed Incomplete Bioc dependencies: Biobase, BiocGenerics, DNAcopy, EBImage, aCGH, multtest.
CRISPRball Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, Biobase, BiocFileCache, BiocGenerics, BiocParallel, BiocSingular, BiocVersion, Biostrings, ComplexHeatmap, DOSE, DelayedArray, DelayedMatrixStats, ExperimentHub, GOSemSim, GenomeInfoDb, GenomicRanges, IRanges, InteractiveComplexHeatmap, KEGGREST, KEGGgraph, MAGeCKFlute, MatrixGenerics, PCAtools, Rgraphviz, S4Arrays, S4Vectors, ScaledMatrix, SingleCellExperiment, SparseArray, SummarizedExperiment, UCSC.utils, XVector, assorthead, beachmat, clusterProfiler, dittoSeq, enrichplot, fgsea, ggtree, graph, pathview, qvalue, sparseMatrixStats, treeio, zlibbioc.
crisprBase Unclaimed Incomplete Bioc dependencies: BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, S4Vectors, UCSC.utils, XVector, zlibbioc.
crisprBowtie Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rbowtie, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, crisprBase, rtracklayer, zlibbioc.
crisprBwa Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rbwa, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, crisprBase, rtracklayer, zlibbioc.
crisprDesign Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocVersion, Biostrings, DelayedArray, ExperimentHub, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rbowtie, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, basilisk, basilisk.utils, biomaRt, crisprBase, crisprBowtie, crisprScore, dir.expiry, rtracklayer, txdbmaker, zlibbioc.
crisprScore Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationHub, Biobase, BiocFileCache, BiocGenerics, BiocVersion, Biostrings, ExperimentHub, GenomeInfoDb, IRanges, KEGGREST, S4Vectors, UCSC.utils, XVector, basilisk, basilisk.utils, dir.expiry, zlibbioc.
CRISPRseek Unclaimed Incomplete Bioc dependencies: BSgenome, Biobase, BiocGenerics, BiocIO, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, MatrixGenerics, Rhdf5lib, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, rhdf5, rhdf5filters, rtracklayer, zlibbioc.
crisprShiny Unclaimed Incomplete Bioc dependencies: AnnotationDbi, AnnotationFilter, AnnotationHub, BSgenome, Biobase, BiocFileCache, BiocGenerics, BiocIO, BiocParallel, BiocVersion, Biostrings, DelayedArray, ExperimentHub, GenomeInfoDb, GenomicAlignments, GenomicFeatures, GenomicRanges, Gviz, IRanges, KEGGREST, MatrixGenerics, ProtGenerics, Rbowtie, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, VariantAnnotation, XVector, basilisk, basilisk.utils, biomaRt, biovizBase, crisprBase, crisprBowtie, crisprDesign, crisprScore, crisprViz, dir.expiry, ensembldb, pwalign, rtracklayer, txdbmaker, zlibbioc.
CrispRVariants Unclaimed Incomplete Bioc dependencies: AnnotationDbi, Biobase, BiocGenerics, BiocParallel, Biostrings, DelayedArray, GenomeInfoDb, GenomicAlignments, GenomicRanges, IRanges, KEGGREST, MatrixGenerics, Rhtslib, Rsamtools, S4Arrays, S4Vectors, SparseArray, SummarizedExperiment, UCSC.utils, XVector, zlibbioc.

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