Update docs/BIOI611_scRNA_seq_cele_cellranger.ipynb

Bix4UMD · Dec 6, 2024 · a8ec670 · a8ec670
1 parent b758a4c
commit a8ec670
Showing 1 changed file with 12 additions and 3 deletions.
diff --git a/docs/BIOI611_scRNA_seq_cele_cellranger.ipynb b/docs/BIOI611_scRNA_seq_cele_cellranger.ipynb
@@ -4,7 +4,7 @@
   "metadata": {
     "colab": {
       "provenance": [],
-      "authorship_tag": "ABX9TyMnBOK1zaB4XJp605WWiYHL",
+      "authorship_tag": "ABX9TyNOn0jL/kSmghx8AAs6DTEy",
       "include_colab_link": true
     },
     "kernelspec": {
@@ -36,10 +36,19 @@
         "Data can be obtained from the link below:\n",
         "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE126954\n",
         "\n",
-        "An copy of the data has been stored here:\n",
-        "/scratch/zt1/project/bioi611/shared/raw_data/10x_cele_data/scRNA/\n",
         "\n",
+        "* GSM3618670\tUW synchronized 300 min post bleach\n",
+        "* GSM3618671\tUW synchronized 400 min post bleach\n",
+        "* GSM3618672\tUW synchronized 500 min post bleach batch 1\n",
+        "* GSM3618673\tUW synchronized 500 min post bleach batch 2\n",
+        "* GSM3618674\tUPenn mixed embryo batch r17\n",
+        "* GSM3618675\tUPenn mixed embryo batch b01\n",
+        "* GSM3618676\tUPenn mixed embryo batch b02\n",
+        "\n",
+        "In this class, you will only work on: `300 min post bleach`, `400 min post bleach` and `500 min post bleach batch 1`\n",
         "\n",
+        "An copy of the data has been stored here:\n",
+        "/scratch/zt1/project/bioi611/shared/raw_data/10x_cele_data/scRNA/\n",
         "\n",
         "1.   If you want to download and prepare the files yourself,\n",
         "\n",