Merge pull request #18 from christopher-mohr/development

Extend cnv file pattern for read_cnv_data function
Boehringer-Ingelheim · Feb 26, 2024 · 0e4248e · 0e4248e
2 parents 62003c8 + 74e10fb
commit 0e4248e
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/R/cnv.R b/R/cnv.R
@@ -41,7 +41,7 @@ new_cnv_output <- function(cnv_file_path, local_app=FALSE) {
 read_cnv_data <- function(cnv_directory, local_app=FALSE){
   cnv_files <- list.files(
     path = cnv_directory,
-    pattern = "*CopyNumberVariants.vcf",
+    pattern = "*cnv.vcf|*CopyNumberVariants.vcf",
     full.names = TRUE
   )
   cnv_data <- map(cnv_files, cnv, local_app)  %>%