release 1.6.3 and docker setup

misc/Dockerfile

@@ -0,0 +1,44 @@
+FROM ubuntu:22.04
+
+MAINTAINER Jeltje van Baren, [email protected]
+
+# deal with tzdata timezone question
+# see https://dev.to/setevoy/docker-configure-tzdata-and-timezone-during-build-20bk
+ENV TZ=America/Los_Angeles
+RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone
+
+#Install Essentials
+RUN apt-get update && apt-get install -y \
+	wget \
+	build-essential \
+	cmake \
+	git \
+	pkg-config \
+	libcurl4-openssl-dev \
+	libssl-dev \
+	libxml2-dev \
+	samtools \
+	bedtools \
+	minimap2 \
+	r-base \
+	salmon \
+	python3 \
+	python3-pip 
+
+RUN pip install flair-brookslab==1.6.3 \
+	rpy2 \
+	pandas \
+	matplotlib \
+	seaborn
+
+RUN R -e 'update.packages(ask=FALSE)'
+RUN R -e 'install.packages(c("devtools", "BiocManager", "ggplot2", "qqman", "lazyeval"))'
+RUN R -e 'requireNamespace("BiocManager"); BiocManager::install(c("DRIMSeq", "stageR", "DESeq2", "apeglm"))' 
+
+RUN mkdir /data
+WORKDIR /data
+
+# And clean up
+RUN apt-get clean && rm -rf /var/lib/apt/lists/* 
+
+

setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = flair-brookslab
-version = 1.6.2
+version = 1.6.3
 author = Jeltje van Baren
 author_email = [email protected]
 description = flair

src/flair/flair.py

@@ -1182,7 +1182,7 @@ def main():
 			sys.exit(1)
 
 	if mode == '--version':
-		sys.stderr.write('FLAIR v1.6.2\n')
+		sys.stderr.write('FLAIR v1.6.3\n')
 
 
 if __name__ == "__main__":