pyproject.toml

[build-system]
requires = ["setuptools>=64", "wheel"]
build-backend = "setuptools.build_meta"

[tool.distutils.bdist_wheel]
universal = true

[project]
name = "BioCRNpyler"
version = "1.1.2"
description = "A chemical reaction network compiler for generating large biological circuit models"
authors = [{name='Build-A-Cell'}]
classifiers=[
        'Development Status :: 5 - Production/Stable',
        'Intended Audience :: Science/Research',
        'License :: OSI Approved :: BSD License',
        'Programming Language :: Python',
        'Programming Language :: Python :: 3',
        'Programming Language :: Python :: 3.8',
        'Programming Language :: Python :: 3.9',
        'Programming Language :: Python :: 3.10',
        'Programming Language :: Python :: 3.11',
        'Programming Language :: Python :: 3.12',
        'Topic :: Software Development',
        'Topic :: Scientific/Engineering',
        'Operating System :: OS Independent',
    ]
license = {file = "LICENSE"}
readme = "README.md"
keywords=["SBML", "synthetic biology", "modeling",
          "Chemical Reaction Network", "CRN"]
dependencies = [
    "python-libsbml",
    "numpy<2.0",
    "matplotlib",
    "networkx",
    "bokeh>=1.4.0",
    "fa2_modified",
    "jupyter",
    "pytest",
    "pytest-cov",
    "nbconvert"
]
requires-python = ">=3.7"

[project.optional-dependencies]
test = [
  "pytest"
]

[project.urls]
"Homepage" = "https://github.com/buildacell/biocrnpyler/"
"Bug Tracker" = "https://github.com/buildacell/biocrnpyler/issues"

[tool.setuptools]
packages = ["biocrnpyler"]
include-package-data = true
package-dir = {"biocrnpyler"="biocrnpyler"}