Code

Session orchestrator#339

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tab-cmd merged 249 commits into2.0.0rc4CAMBI-tech/BciPy:2.0.0rc4from session-orchestratorCAMBI-tech/BciPy:session-orchestratorCopy head branch name to clipboardOct 23, 2024

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Commits

Commits on Mar 11, 2024

• Add work in progress session orchestrator module

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Commits on Mar 25, 2024

• gets main.py functionality working in the orchestrator

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Commits on Apr 6, 2024

• Fixes task initialization process

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• adds some orchestrator tests

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• Cleans up session_orchestrator.py

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• Moves paramter loading to task execution

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Commits on Apr 15, 2024

• Adds functions for parsing visit actions

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• Adds some test to action parsing

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• Adds tests for action serialization

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• Adds parameter validation function with tests

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• Updates changelog.md

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• Fixes formatting error in changelog.md

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• lints actions.py and test_actions.py

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Commits on Apr 22, 2024

• Adds orchestrator options to the parameters.json file

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• Adds constant for action seperator

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• removes old file that has been moved

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• renames action parsing module and updates test imports

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Commits on May 20, 2024

• simplifies serialize_actions function

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• Fixes typing and formatting issues

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Commits on May 21, 2024

• removes parse_actions.py

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• renames parse_actions to parse_sequence

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• replaces magic '->' string with constant

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• removes unnecessary error check

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• Merge pull request #320 from CAMBI-tech/orchestrator_parameters

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• Adds basic structure for orchestrator actions

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• refactors config function naming and adds support for actions in parsing functions

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• renames test_actions to test_config

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• Adds additional tests for action parsing

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Commits on May 22, 2024

• Adds action serialization tests

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Commits on May 27, 2024

• Add more actions

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Commits on May 30, 2024

• Refactors type unions to be Optionals

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• Fixes failing import

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Commits on Jun 1, 2024

• Adds parameter loading to orchestrator

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• Adds initialize and cleanup methods to Task

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• makes name a property in OfflineAnalysisAction

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• Implements setup method in base Task class

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• Adds missing parent execute call

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• changes initialize call to setup in orchestrator

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• removes unused imports

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• Refactors name to be a property in base Task class

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• Refactors config.py to only work with tasks

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Commits on Jun 3, 2024

• Fixes incorrect argument names for 'OfflineAnalysisAction'

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• adds demo file for orchestrator execution

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• Removes demo function in orchestrator

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• Fixes data_save initialization in orchestrator

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Commits on Jun 5, 2024

• move demo and add some comments

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• Creates default_user_id constant

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• Fixes incorrect user initialization

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Commits on Jun 8, 2024

• Refactors orchestrator save structure

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Commits on Jun 10, 2024

• Implements save method

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• lint orchestrator file

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• fixes orchestrator tests

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• Adds task_registry_dict to simplify fetching classes for initialization

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• Adds comment about task_registry_dict

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Commits on Jun 11, 2024

• Moves task_registry_dict to orchestrator.config

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Commits on Jun 13, 2024

• refactors name property of tasks

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• Adds task registry class

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Commits on Jun 14, 2024

• Refactor super calls in orchestrator actions

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• reformats imports

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• refactrs namimg of 'Action' to 'Task'

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• adds type hint for task parameter

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• calls construct_command in constructor

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Commits on Jun 15, 2024

• adds function to run experiment data collection without running from the command line

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• adds ExperimentFieldCollectionAction

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• refactors orchestrator demo file to use ExperimentFieldCollectionAction

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• lints task_registry.py

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• removes unused imports

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• imports Task for correct typing in config

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Commits on Jun 17, 2024

• changes action names to have spaces

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Commits on Jun 21, 2024

• Updates task_registry.py to import all tasks

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Commits on Jun 24, 2024

• moves comment into it's own pivotal ticket

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• removes unused comment

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• moves TASK_SEPERATOR to config.py

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• Adds docstring to orchestrator

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• removes redundant comment

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• removes out of date comment

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• Renames TestConfig

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• lints code

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Commits on Jun 25, 2024

• removes self import

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• Fixes task seperator typo

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Commits on Jun 26, 2024

• removes property decorator in task class

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• removes implementation of abstract class

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• fixes typing errors

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• lints code

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• Merge pull request #328 from CAMBI-tech/orchestrator_actions

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• Merge branch 'session-orchestrator' into experiment_refactor

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Commits on Jun 27, 2024

• removes unused comments

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• updates changelog

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Commits on Jul 1, 2024

• removes super calls to abstract method execute

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• Filters out abstract subclasses from registry generation

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• removes registry dict empty initialization

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• Fixes typing issues

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• Removes task import from registry

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• Merge branch 'session-orchestrator' into task_registry_refactor

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Commits on Jul 2, 2024

• Refactors config to support TaskRegistry

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Commits on Jul 3, 2024

• Refactors task names

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• Fixes failing tests and adds string formatting test

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• lints code

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• Removes unused imports

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• Removes unused imports

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• Fixes formatting and typing congflicy

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• Merge branch '2.0.0rc4' into task_registry_refactor

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• Refactors TaskRegistry to recursively collect subclasses

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• ignores type error with subclass collection

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• Makes BaseCalibrationTask abstract

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• removes name and label from timing_verification.py

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• lints code

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• imports tasks in their module's __init__.py

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• Enforces name attribute in base task class

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• removes unnecessary f-string

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Commits on Jul 9, 2024

• change import strategy, ignore lint errors, start updating main

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• adds calibration task check to registry

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• fixes types and method calls in main

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Commits on Jul 11, 2024

• fixes incorrect method name in TaskRegistry

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• updates bci_main_tests to properly call main methods

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• updates method calls in protocol parsing tests

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• refactors start_app to use start_experiment_field_collection_gui

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• Merge branch '2.0.0rc4' into experiment_refactor

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• Merge pull request #329 from CAMBI-tech/experiment_refactor

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• fix bci_main tests

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• fixes linting and typing errors

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Commits on Jul 17, 2024

• Merged latest upstream

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• Merged latest upstream

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• lints merged code

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Commits on Jul 18, 2024

• changes orchestrator directory name to work on windows

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• Merge pull request #332 from CAMBI-tech/task_registry_refactor

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• Adds basic selection box for orchestrator protocol

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• Adds ability to add and remove tasks to protocol

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• renames sequence to protocol in orchestrator config

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• Allows protocol to be saved to experiments.json

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Commits on Jul 19, 2024

• adds move up and down controls to tasks in protocol

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• Refactors scrollableframes to have a title label

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• Moves create experiment button to the bottom of the gui

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• removes unused f-string

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• Merge pull request #333 from CAMBI-tech/experiment_protocol_gui

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• changes task and action names to be more consistent

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• adds basic TaskData return object

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• fixes failing test in test_copy_phrase

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Commits on Jul 29, 2024

• fixes missing return statement for construct_command

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• adds task_dict to TaskData

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• updates changelog

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• adds seperate BCIUI file with stylsheet

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Commits on Aug 1, 2024

• update demo experiment layout

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Commits on Aug 5, 2024

• adjust stylesheet to remove label backgrounds

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• improves gui code to allow for editing fields

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• add basic removeable element

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• add dynamic list class for easy ui reactivity

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• Add small button component

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• removes explicit color from small button

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• addds additional buttons to field items

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• adds basic toggle class

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• changes toggle componenet to be simple connecting function

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• makes on off callbacks optional in make_toggle

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• add toggle to optional button

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• swaps confusing parameter names

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• loads experiment fields into combobox

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• adds field buttons

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• refactors gui to be inherited class

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• add simple show_alert method

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• add show_alert method

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• Merge pull request #334 from CAMBI-tech/task_return_object

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• adds validation to added fields

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• remove debug prints

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• adds experiment creation to application

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Commits on Aug 9, 2024

• remove unused code

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• rename gui_rewrite to bciui

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• adds app start method

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• adds vertical center option to bciui

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• add beginning of intertask action ui

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• add progress text

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• allows for additional args in app running

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• add functional progress bar

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• Add next task display and functioning buttons

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• adds seperate BCIUI file with stylsheet

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• add dynamic list class for easy ui reactivity

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• adds basic toggle class

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• swaps confusing parameter names

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• loads experiment fields into combobox

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• allows for additional args in app running

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• Merge branch 'bci_gui_rewrite' of https://github.com/CAMBI-tech/BciPy into bci_gui_rewrite

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• Merge branch '2.0.0rc4' into session-orchestrator

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• remove unused imports

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• add protocol alyout and fix bug in DynamicList

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• Parameter guardrails and cleanup (#340)

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• supports adding tasks to the interface

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• add reordering to tasks in the protocol

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• allows adding new fields through the ui

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• adds saving protocol in experiment from gui

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• reduces font size

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• Task initialization and cleanup (#343)

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• Adds documentation to ui methods

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• add action that displays intertask GUI

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• Add proper types and docs to bciui

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• Deprecates old ExperimentRegistry in favor of new ui code

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• Fixes incorrect background color when using dark mode

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• improve stylsheet loading to use existing bcipy constants

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• update legacy BCInterface to base session-orchestrator

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• Merge branch 'session-orchestrator' into bci_gui_rewrite

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• Merge pull request #337 from CAMBI-tech/bci_gui_rewrite

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• Session Orchestrator Updates [Post-Testing] (#344)

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• Bcipy client refactor (#346)

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• Merge branch '2.0.0rc4' into session-orchestrator

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• cleanup

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• Task specific params and Matrix Layout (#349)

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• Orchestrator - Load a JSON of copy phrases to use during execution (#352)

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• Merge branch '2.0.0rc4' into session-orchestrator

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• Updates after merging

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• updates after merging

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• fix logger assignment

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• BciPy report action, offline analysis updates, Intertask GUI. (#354)

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• Merge remote-tracking branch 'origin/2.0.0rc4' into session-orchestrator

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• updates to include IP changes

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• Update to get static offset from the device

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• update action tests

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• lint

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