generated from CDCgov/template
-
Notifications
You must be signed in to change notification settings - Fork 4
/
README.Rmd
149 lines (113 loc) · 6.09 KB
/
README.Rmd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
---
output: github_document
---
<!-- README.md is generated from README.Rmd. Please edit that file -->
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# Survey table: formatted survey estimates
<!-- badges: start -->
<!-- badges: end -->
`surveytable` is an R package for conveniently tabulating estimates from **complex surveys**.
* If you deal with survey objects in R (created with `survey::svydesign()`), then this package is for you.
* Works with **complex surveys** (data systems that involve survey design variables, like weights and strata).
* Works with **unweighted** data as well.
* The `surveytable` package provides short and understandable commands that generate tabulated, formatted, and rounded survey estimates.
* With `surveytable`, you can
* tabulate estimated counts and percentages, with their standard errors and confidence intervals,
* estimate the total population,
* tabulate survey subsets and variable interactions,
* tabulate numeric variables,
* perform hypothesis tests,
* tabulate rates,
* modify survey variables, and
* save the output.
* Optionally, all of the tabulation functions can identify low-precision estimates using the National Center for Health Statistics (NCHS) algorithms (or other algorithms).
* If the `surveytable` code is called from an R Markdown notebook or a Quarto document, it automatically generates HTML or LaTeX tables, as appropriate.
* The package reduces the number of commands that users need to execute, which is especially helpful for users new to R or to programming.
## Installation
Install from CRAN:
``` r
install.packages("surveytable")
```
or get the development version from GitHub:
``` r
install.packages(c("remotes", "git2r"))
remotes::install_github("CDCgov/surveytable", upgrade = "never")
```
## Documentation
Find the documentation for `surveytable` here: https://cdcgov.github.io/surveytable/
## Example
Here is a basic example, to get you started.
1. Load the package:
```{r, message=FALSE}
library(surveytable)
```
2. Specify the survey that you wish you analyze. `surveytable` comes with a survey called `namcs2019sv`, for use in examples.
```{r, results='asis'}
set_survey(namcs2019sv)
```
3. Specify the variable to analyze. In NAMCS, `AGER` is the age category variable:
```{r, results='asis'}
tab("AGER")
```
The table shows:
* Descriptive variable name
* Survey name
* For each level of the variable:
* Number of observations
* Estimated count with its SE and 95% CI
* Estimated percentage with its SE and 95% CI
* Sample size
* Optionally, the table can show whether any low-precision estimates were found
<!-- CDC standard text -->
## Public Domain Standard Notice
This repository constitutes a work of the United States Government and is not
subject to domestic copyright protection under 17 USC § 105. This repository is in
the public domain within the United States, and copyright and related rights in
the work worldwide are waived through the [CC0 1.0 Universal public domain dedication](https://creativecommons.org/publicdomain/zero/1.0/).
All contributions to this repository will be released under the CC0 dedication. By
submitting a pull request you are agreeing to comply with this waiver of
copyright interest.
## License Standard Notice
The repository utilizes code licensed under the terms of the Apache Software
License and therefore is licensed under ASL v2 or later.
This source code in this repository is free: you can redistribute it and/or modify it under
the terms of the Apache Software License version 2, or (at your option) any
later version.
This source code in this repository is distributed in the hope that it will be useful, but WITHOUT ANY
WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE. See the Apache Software License for more details.
You should have received a copy of the Apache Software License along with this
program. If not, see https://www.apache.org/licenses/LICENSE-2.0.html
The source code forked from other open source projects will inherit its license.
## Privacy Standard Notice
This repository contains only non-sensitive, publicly available data and
information. All material and community participation is covered by the
[Disclaimer](https://github.com/CDCgov/template/blob/master/DISCLAIMER.md)
and [Code of Conduct](https://github.com/CDCgov/template/blob/master/code-of-conduct.md).
For more information about CDC's privacy policy, please visit [https://www.cdc.gov/other/privacy.html](https://www.cdc.gov/other/privacy.html).
## Contributing Standard Notice
Anyone is encouraged to contribute to the repository by [forking](https://docs.github.com/articles/fork-a-repo)
and submitting a pull request. (If you are new to GitHub, you might start with a
[basic tutorial](https://docs.github.com/articles/set-up-git).) By contributing
to this project, you grant a world-wide, royalty-free, perpetual, irrevocable,
non-exclusive, transferable license to all users under the terms of the
[Apache Software License v2](https://www.apache.org/licenses/LICENSE-2.0.html) or
later.
All comments, messages, pull requests, and other submissions received through
CDC including this GitHub page may be subject to applicable federal law, including but not limited to the Federal Records Act, and may be archived. Learn more at [https://www.cdc.gov/other/privacy.html](https://www.cdc.gov/other/privacy.html).
## Records Management Standard Notice
This repository is not a source of government records, but is a copy to increase
collaboration and collaborative potential. All government records will be
published through the [CDC web site](https://www.cdc.gov).
## Additional Standard Notices
Please refer to [CDC's Template Repository](https://github.com/CDCgov/template)
for more information about [contributing to this repository](https://github.com/CDCgov/template/blob/master/CONTRIBUTING.md),
[public domain notices and disclaimers](https://github.com/CDCgov/template/blob/master/DISCLAIMER.md),
and [code of conduct](https://github.com/CDCgov/template/blob/master/code-of-conduct.md).