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bettercallsal v0.4.0
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@biocoder biocoder released this 17 Mar 19:29
· 24 commits to master since this release
v0.4.0
aa8c024

This is the v0.4.0 release of bettercallsal with following changes:

  • Now, sourmash search is an option on top of the default sourmash gather which is used as an additional step to further narrow down possible serotype hits based on genome fraction. Please refer to sourmash docs about which one is appropriate for your use case. The sourmash search can be activated by turning off sourmash gather via the --sourmashgather_run false CLI option.
  • By default, 10 CPU cores are used to run all workflow steps. You can change this behavior and set maximum CPU cores to be used via the --max_cpus CLI option. Ex: --max_cpus 5.
  • The minimum memory requirements have been successfully re-tested with all workflow steps and now the bettercallsal workflow requires only 16 GBs of memory instead of 64 GBs.
  • The v0.4.0 of bettercallsal has been successfully tested and works in cloud environment with AWS Batch. You need to set up the proper AWS Batch resources per Nextflow docs. Another example: Manual AWS Batch Configuration.
  • Squashed some bugs.
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