Teaching-ImageJ-FIJI

List of resources used during different courses

NorMIC 2022

Material used in the 9th NorMIC Workshop on Microscopy Image Processing.

I had the plesure to run a 2h practical session on bio-image analysis. The material used is available at this site.

NMI 2021

Short (30-minute) introductory lecture on BioImage Analysis using FIJI. Go here for details

This lecture was part of the NMI 2021 open lectures

Here the link for the recording of the live demo:

NorMIC 2021

Material used in the 6th NorMIC Imaging Workshop and the 8th NorMic Workshop on Biologial Optical Microscopy

• The material for the 1st practical session on bio-image analysis can be found here.

• The material for the 2nd practical session on macro recording and basic macro programming can be found here.

Workflow minimal examples

• Segmentation via gradients

• Temporal filtering - removing stationary background

• Spot detection - Difference of Gaussias

• Length measurements