Merge branch 'release/0.124.0'

.docker-compose.sharejs.env

@@ -1,7 +1,7 @@
 SHAREJS_SERVER_HOST=0.0.0.0
 SHAREJS_SERVER_PORT=7007
 SHAREJS_DB_NAME=sharejs
-SHAREJS_DB_URL=mongodb://192.168.168.167:27017/sharejs
+SHAREJS_DB_URL=mongodb://192.168.168.167:27017/sharejs?ssl=true
 
 #SHAREJS_CORS_ALLOW_ORIGIN=
 #SHAREJS_SENTRY_DSN=

.dockerignore

@@ -7,3 +7,4 @@ node_modules
 *.pyc
 **/*.pyc
 docker*
+ssl/

.gitignore

@@ -194,3 +194,4 @@ scripts/image_maniplation/test_rounded_corners.html
 docker-compose.override.yml
 .unison*
 .docker-sync/
+ssl/

CHANGELOG

@@ -2,6 +2,11 @@
 Changelog
 *********
 
+0.124.0 (2017-11-13)
+====================
+
+- Critical bug fixes
+
 0.123.0 (2017-10-26)
 ====================
 

Dockerfile

@@ -6,14 +6,14 @@ ENV GOSU_VERSION=1.10 \
     YARN_VERSION=1.1.0
 
 # Libraries such as matplotlib require a HOME directory for cache and configuration
-RUN usermod -d /home www-data \
-    && chown www-data:www-data /home \
-    # https://github.com/nodejs/docker-node/blob/9c25cbe93f9108fd1e506d14228afe4a3d04108f/8.2/Dockerfile
-    # gpg keys listed at https://github.com/nodejs/node#release-team
-    && set -ex \
+RUN set -ex \
+    && mkdir -p /var/www \
+    && chown www-data:www-data /var/www \
     # GOSU
     && gpg --keyserver pool.sks-keyservers.net --recv-keys B42F6819007F00F88E364FD4036A9C25BF357DD4 \
     && for key in \
+      # https://github.com/nodejs/docker-node/blob/9c25cbe93f9108fd1e506d14228afe4a3d04108f/8.2/Dockerfile
+      # gpg keys listed at https://github.com/nodejs/node#release-team
       # Node
       9554F04D7259F04124DE6B476D5A82AC7E37093B \
       94AE36675C464D64BAFA68DD7434390BDBE9B9C5 \

README-docker-compose.md

@@ -120,7 +120,7 @@ Ubuntu: Skip install of docker-sync. instead...
     _NOTE: When the various requirements installations are complete these containers will exit. You should only need to run these containers after pulling code that changes python requirements or if you update the python requirements._
 
 2. Start Core Component Services (Detached)
-  - `$ docker-compose up -d elasticsearch postgres tokumx rabbitmq`
+  - `$ docker-compose up -d elasticsearch postgres mongo rabbitmq`
 
 3. Remove your existing node_modules and start the assets watcher (Detached)
   - `$ rm -Rf ./node_modules`

addons/wiki/settings/defaults.py

@@ -1,5 +1,5 @@
 import datetime
-
+import os
 import pytz
 
 from website import settings
@@ -9,7 +9,7 @@
 SHAREJS_URL = '{}:{}'.format(SHAREJS_HOST, SHAREJS_PORT)
 
 SHAREJS_DB_NAME = 'sharejs'
-SHAREJS_DB_URL = 'mongodb://{}:{}/{}'.format(settings.DB_HOST, settings.DB_PORT, SHAREJS_DB_NAME)
+SHAREJS_DB_URL = os.environ.get('SHAREJS_DB_URL', 'mongodb://{}:{}/{}'.format(settings.DB_HOST, settings.DB_PORT, SHAREJS_DB_NAME))
 
 # TODO: Change to release date for wiki change
 WIKI_CHANGE_DATE = datetime.datetime.utcfromtimestamp(1423760098).replace(tzinfo=pytz.utc)

addons/wiki/utils.py

@@ -3,6 +3,7 @@
 import urllib
 import uuid
 
+import ssl
 from pymongo import MongoClient
 import requests
 
@@ -101,7 +102,7 @@ def migrate_uuid(node, wname):
 
 def share_db():
     """Generate db client for sharejs db"""
-    client = MongoClient(wiki_settings.SHAREJS_DB_URL)
+    client = MongoClient(wiki_settings.SHAREJS_DB_URL, ssl_cert_reqs=ssl.CERT_NONE)
     return client[wiki_settings.SHAREJS_DB_NAME]
 
 

admin/preprint_providers/views.py

@@ -6,6 +6,7 @@
 from django.core.urlresolvers import reverse_lazy
 from django.http import HttpResponse, JsonResponse
 from django.views.generic import ListView, DetailView, View, CreateView, DeleteView, TemplateView, UpdateView
+from django.core.management import call_command
 from django.contrib.auth.mixins import PermissionRequiredMixin
 from django.forms.models import model_to_dict
 from django.shortcuts import redirect
@@ -18,8 +19,7 @@
 
 # When preprint_providers exclusively use Subject relations for creation, set this to False
 SHOW_TAXONOMIES_IN_PREPRINT_PROVIDER_CREATE = True
-#TODO: Add subjects back in when custom taxonomies are fully integrated
-FIELDS_TO_NOT_IMPORT_EXPORT = ['access_token', 'share_source', 'subjects_acceptable', 'subjects']
+FIELDS_TO_NOT_IMPORT_EXPORT = ['access_token', 'share_source']
 
 
 class PreprintProviderList(PermissionRequiredMixin, ListView):
@@ -170,15 +170,15 @@ def get(self, request, *args, **kwargs):
         cleaned_fields = {key: value for key, value in cleaned_data['fields'].iteritems() if key not in FIELDS_TO_NOT_IMPORT_EXPORT}
         cleaned_fields['licenses_acceptable'] = [node_license.license_id for node_license in preprint_provider.licenses_acceptable.all()]
         cleaned_fields['default_license'] = preprint_provider.default_license.license_id if preprint_provider.default_license else ''
-        # cleaned_fields['subjects'] = self.serialize_subjects(preprint_provider)
+        cleaned_fields['subjects'] = self.serialize_subjects(preprint_provider)
         cleaned_data['fields'] = cleaned_fields
         filename = '{}_export.json'.format(preprint_provider.name)
         response = HttpResponse(json.dumps(cleaned_data), content_type='text/json')
         response['Content-Disposition'] = 'attachment; filename={}'.format(filename)
         return response
 
     def serialize_subjects(self, provider):
-        if provider._id != 'osf':
+        if provider._id != 'osf' and provider.subjects.count():
             result = {}
             result['include'] = []
             result['exclude'] = []
@@ -231,8 +231,9 @@ def post(self, request, *args, **kwargs):
         if form.is_valid():
             file_str = self.parse_file(request.FILES['file'])
             file_json = json.loads(file_str)
+            current_fields = [f.name for f in PreprintProvider._meta.get_fields()]
             # make sure not to import an exported access token for SHARE
-            cleaned_result = {key: value for key, value in file_json['fields'].iteritems() if key not in FIELDS_TO_NOT_IMPORT_EXPORT}
+            cleaned_result = {key: value for key, value in file_json['fields'].iteritems() if key not in FIELDS_TO_NOT_IMPORT_EXPORT and key in current_fields}
             preprint_provider = self.create_or_update_provider(cleaned_result)
             return redirect('preprint_providers:detail', preprint_provider_id=preprint_provider.id)
 
@@ -248,8 +249,7 @@ def get_page_provider(self):
             return PreprintProvider.objects.get(id=page_provider_id)
 
     def add_subjects(self, provider, subject_data):
-        from osf.management.commands.populate_custom_taxonomies import migrate
-        migrate(provider._id, subject_data)
+        call_command('populate_custom_taxonomies', '--provider', provider._id, '--data', json.dumps(subject_data))
 
     def create_or_update_provider(self, provider_data):
         provider = self.get_page_provider()

admin/static/js/metrics/metrics.es6.js

@@ -64,7 +64,31 @@ var getOneDayTimeframe = function(daysBack, monthsBack) {
     };
 };
 
+/**
+ * Configure a time frame for a day x days ago (end) and y days prior to x (start)
+ *
+ * @method getVariableDayTimeframe
+ * @param {Integer} endDaysBack - the number of days back to set as the end day
+ * @param {Integer} totalDays - the number of days back to reach the start day
+ * @return {Object} the keen-formatted timeframe
+ */
+var getVariableDayTimeframe = function(endDaysBack, totalDays) {
+    var start = null;
+    var end = null;
+    var date = new Date();
 
+    date.setUTCDate(date.getDate() - endDaysBack);
+    date.setUTCHours(0, 0, 0, 0, 0);
+
+    end = date.toISOString();
+
+    date.setDate(date.getDate() - totalDays);
+    start = date.toISOString();
+    return {
+        "start": start,
+        "end": end
+    };
+};
 
 /**
  * Configure a Title for a chart dealing with the past month or day
@@ -322,6 +346,14 @@ var monthlyActiveUsersQuery = new keenAnalysis.Query("count_unique", {
     timezone: "UTC"
 });
 
+// Previous 30 Days Active Users
+var thirtyDaysActiveUsersQuery = new keenAnalysis.Query("count_unique", {
+    eventCollection: "pageviews",
+    targetProperty: "user.id",
+    timeframe: "previous_30_days",
+    timezone: "UTC"
+});
+
 var dailyActiveUsersQuery = new keenAnalysis.Query("count_unique", {
     event_collection: "pageviews",
     target_property: "user.id",
@@ -336,6 +368,48 @@ var totalProjectsQuery = new keenAnalysis.Query("sum", {
     timeframe: "previous_1_days",
 });
 
+// 7 Days back Active Users
+var weekBackThirtyDaysActiveUsersQuery = new keenAnalysis.Query("count_unique", {
+    eventCollection: "pageviews",
+    targetProperty: "user.id",
+    timeframe: getVariableDayTimeframe(7, 30),
+});
+
+// 7 Days back Active Users
+var weekBackDailyActiveUsersQuery = new keenAnalysis.Query("count_unique", {
+    eventCollection: "pageviews",
+    targetProperty: "user.id",
+    timeframe: getVariableDayTimeframe(7, 1),
+});
+
+// 28 Days back Active Users
+var monthBackThirtyDaysActiveUsersQuery = new keenAnalysis.Query("count_unique", {
+    eventCollection: "pageviews",
+    targetProperty: "user.id",
+    timeframe: getVariableDayTimeframe(28, 30),
+});
+
+// 28 Days back Active Users
+var monthBackDailyActiveUsersQuery = new keenAnalysis.Query("count_unique", {
+    eventCollection: "pageviews",
+    targetProperty: "user.id",
+    timeframe: getVariableDayTimeframe(28, 1),
+});
+
+// 364 Days back Active Users
+var yearBackThirtyDaysActiveUsersQuery = new keenAnalysis.Query("count_unique", {
+    eventCollection: "pageviews",
+    targetProperty: "user.id",
+    timeframe: getVariableDayTimeframe(364, 30),
+});
+
+// 364 Days back Active Users
+var yearBackDailyActiveUsersQuery = new keenAnalysis.Query("count_unique", {
+    eventCollection: "pageviews",
+    targetProperty: "user.id",
+    timeframe: getVariableDayTimeframe(364, 1),
+});
+
 // <+><+><+><+><+><+
 //    user data    |
 // ><+><+><+><+><+>+
@@ -808,7 +882,13 @@ var ActiveUserMetrics = function() {
 var HealthyUserMetrics = function() {
 
     // stickiness ratio - DAU/MAU
-    renderCalculationBetweenTwoQueries(dailyActiveUsersQuery, monthlyActiveUsersQuery, "#stickiness-ratio", null, "percentage");
+    renderCalculationBetweenTwoQueries(dailyActiveUsersQuery, thirtyDaysActiveUsersQuery, "#stickiness-ratio-1-day-ago", null, "percentage");
+     // stickiness ratio - DAU/MAU for 1 week ago
+    renderCalculationBetweenTwoQueries(weekBackDailyActiveUsersQuery, weekBackThirtyDaysActiveUsersQuery , "#stickiness-ratio-1-week-ago", null, "percentage");
+    // stickiness ratio - DAU/MAU for 4 weeks ago
+    renderCalculationBetweenTwoQueries(monthBackDailyActiveUsersQuery, monthBackThirtyDaysActiveUsersQuery , "#stickiness-ratio-4-weeks-ago", null, "percentage");
+    // stickiness ratio - DAU/MAU for 52 weeks ago
+    renderCalculationBetweenTwoQueries(yearBackDailyActiveUsersQuery, yearBackThirtyDaysActiveUsersQuery , "#stickiness-ratio-52-weeks-ago", null, "percentage");
 };
 
 

admin/templates/metrics/osf_metrics.html

@@ -577,10 +577,50 @@ <h4>Project to User Ratios</h4>
                                 Stickiness Ratio
                             </div>
                             <div class="chart-stage">
-                                <div id="stickiness-ratio"></div>
+                                <div id="stickiness-ratio-1-day-ago"></div>
                             </div>
                             <div class="chart-notes">
-                                Of those that are active in the last month, how many are active daily? Daily Active Users / Monthly Active Users.
+                                Of those that are active in the last 30 days, how many are active daily? 
+                                Formula: Daily Active Users (yesterday) / Daily Active Users previous 30 days
+                            </div>
+                        </div>
+                    </div>
+                    <div class="col-sm-4">
+                        <div class="chart-wrapper">
+                            <div class="chart-title">
+                                Stickiness Ratio 1 week ago
+                            </div>
+                            <div class="chart-stage">
+                                <div id="stickiness-ratio-1-week-ago"></div>
+                            </div>
+                            <div class="chart-notes">
+                                Stickiness Ratio for the same day of the week 1 week ago.
+                            </div>
+                        </div>
+                    </div>
+                    <div class="col-sm-4">
+                        <div class="chart-wrapper">
+                            <div class="chart-title">
+                                Stickiness Ratio 4 weeks ago
+                            </div>
+                            <div class="chart-stage">
+                                <div id="stickiness-ratio-4-weeks-ago"></div>
+                            </div>
+                            <div class="chart-notes">
+                                Stickiness Ratio for the same day of the week 4 weeks ago.
+                            </div>
+                        </div>
+                    </div>
+                    <div class="col-sm-4">
+                        <div class="chart-wrapper">
+                            <div class="chart-title">
+                                Stickiness Ratio 52 weeks ago
+                            </div>
+                            <div class="chart-stage">
+                                <div id="stickiness-ratio-52-weeks-ago"></div>
+                            </div>
+                            <div class="chart-notes">
+                                Stickiness Ratio for the same day of the week 52 weeks ago.
                             </div>
                         </div>
                     </div>

admin_tests/preprint_providers/test_views.py

@@ -250,11 +250,32 @@ def test_export_to_import_new_provider(self):
 
         nt.assert_equal(res.status_code, 302)
         nt.assert_equal(new_provider._id, 'new_id')
-        # nt.assert_equal(new_provider.subjects.all().count(), 1)
+        nt.assert_equal(new_provider.subjects.all().count(), 1)
         nt.assert_equal(new_provider.licenses_acceptable.all().count(), 1)
-        # nt.assert_equal(new_provider.subjects.all()[0].text, self.subject.text)
+        nt.assert_equal(new_provider.subjects.all()[0].text, self.subject.text)
         nt.assert_equal(new_provider.licenses_acceptable.all()[0].license_id, 'NONE')
 
+    def test_export_to_import_new_provider_with_models_out_of_sync(self):
+        update_taxonomies('test_bepress_taxonomy.json')
+
+        res = self.view.get(self.request)
+        content_dict = json.loads(res.content)
+
+        content_dict['fields']['_id'] = 'new_id'
+        content_dict['fields']['new_field'] = 'this is a new field, not in the model'
+        del content_dict['fields']['description']  # this is a old field, removed from the model JSON
+
+        data = StringIO(unicode(json.dumps(content_dict), 'utf-8'))
+        self.import_request.FILES['file'] = InMemoryUploadedFile(data, None, 'data', 'application/json', 500, None, {})
+
+        res = self.import_view.post(self.import_request)
+
+        provider_id = ''.join([i for i in res.url if i.isdigit()])
+        new_provider = PreprintProvider.objects.get(id=provider_id)
+
+        nt.assert_equal(res.status_code, 302)
+        nt.assert_equal(new_provider._id, 'new_id')
+
     def test_update_provider_existing_subjects(self):
         # If there are existing subjects for a provider, imported subjects are ignored
         self.import_view.kwargs = {'preprint_provider_id': self.preprint_provider.id}
@@ -281,9 +302,9 @@ def test_update_provider_existing_subjects(self):
 
         nt.assert_equal(res.status_code, 302)
         nt.assert_equal(new_provider_id, self.preprint_provider.id)
-        # nt.assert_equal(self.preprint_provider.subjects.all().count(), 1)
+        nt.assert_equal(self.preprint_provider.subjects.all().count(), 1)
         nt.assert_equal(self.preprint_provider.licenses_acceptable.all().count(), 1)
-        # nt.assert_equal(self.preprint_provider.subjects.all()[0].text, self.subject.text)
+        nt.assert_equal(self.preprint_provider.subjects.all()[0].text, self.subject.text)
         nt.assert_equal(self.preprint_provider.licenses_acceptable.all()[0].license_id, 'CCBY')
 
 

api/base/generic_bulk_views.py

@@ -76,6 +76,7 @@ def get_requested_resources(self, request, request_data):
         Retrieves resources in request body
         """
         model_cls = request.parser_context['view'].model_class
+
         requested_ids = [data['id'] for data in request_data]
         column_name = 'guids___id' if issubclass(model_cls, GuidMixin) else '_id'
         resource_object_list = model_cls.find(Q(column_name, 'in', requested_ids))
@@ -87,6 +88,11 @@ def get_requested_resources(self, request, request_data):
         if len(resource_object_list) != len(request_data):
             raise ValidationError({'non_field_errors': 'Could not find all objects to delete.'})
 
+        if column_name == 'guids___id':
+            resource_object_list = [resource_object_list.get(guids___id=id) for id in requested_ids]
+        else:
+            resource_object_list = [resource_object_list.get(_id=id) for id in requested_ids]
+
         return resource_object_list
 
     def allow_bulk_destroy_resources(self, user, resource_list):