GitHub - ChangLu92/mtools: Image analysis tools in Matlab working with data in an OMERO server

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Image analysis tools in Matlab working with data in an OMERO server

www.openmicroscopy.org/site/products/partner/omero.mtools

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Name		Name	Last commit message	Last commit date
Latest commit History 264 Commits
Associated Files		Associated Files
ROIs		ROIs
Segmentation		Segmentation
bacTracker		bacTracker
deleteElementsFrom		deleteElementsFrom
interfaces		interfaces
omeroTestingFunctions		omeroTestingFunctions
.gitignore		.gitignore
FLIPLaunchpad.m		FLIPLaunchpad.m
FLIPMeasure.m		FLIPMeasure.m
FRAPLaunchpad.m		FRAPLaunchpad.m
FRAPMeasure.m		FRAPMeasure.m
JavaImageToMatlab.m		JavaImageToMatlab.m
ROISegmentAndOverlay.m		ROISegmentAndOverlay.m
ROISegmentDistanceAndMask.m		ROISegmentDistanceAndMask.m
ROISegmentMeasureAndMask.m		ROISegmentMeasureAndMask.m
TssBAnalysisQueue.m		TssBAnalysisQueue.m
TssBRunAnalysis.m		TssBRunAnalysis.m
YuabExtentAnalysis.m		YuabExtentAnalysis.m
cellNeighbours.m		cellNeighbours.m
cellPropsToXLS.m		cellPropsToXLS.m
cellProximities.m		cellProximities.m
clickSection.m		clickSection.m
copyImageChangingParameters.m		copyImageChangingParameters.m
createImage.m		createImage.m
createNewImage.m		createNewImage.m
createNewImageFromOldPixels.m		createNewImageFromOldPixels.m
createRenderedImage.m		createRenderedImage.m
createSpreadsheetFromData.m		createSpreadsheetFromData.m
cutPatchesFromROI.m		cutPatchesFromROI.m
distanceMeasure.m		distanceMeasure.m
ellipse.m		ellipse.m
ellipseCoords.m		ellipseCoords.m
eventTimerAndCrop.m		eventTimerAndCrop.m
eventTimerLaunchpad.m		eventTimerLaunchpad.m
gatewayConnect.m		gatewayConnect.m
gatewayDisconnect.m		gatewayDisconnect.m
getAquisitionBleachingConstant.m		getAquisitionBleachingConstant.m
getChannelLabelsFromPixels.m		getChannelLabelsFromPixels.m
getChannelMinMax.m		getChannelMinMax.m
getChannelsFromPixels.m		getChannelsFromPixels.m
getColourIdx.m		getColourIdx.m
getDatasetIdsFromImageIds.m		getDatasetIdsFromImageIds.m
getDsExample.m		getDsExample.m
getImageIdsAndNamesFromDatasetIds.m		getImageIdsAndNamesFromDatasetIds.m
getImagesFromDataset.m		getImagesFromDataset.m
getIntensitiesInROI.m		getIntensitiesInROI.m
getMyDatasetImages.m		getMyDatasetImages.m
getMyDatasets.m		getMyDatasets.m
getPatchFromRectROI.m		getPatchFromRectROI.m
getPixIdFromROIFile.m		getPixIdFromROIFile.m
getPlaneFromImageId.m		getPlaneFromImageId.m
getPlaneFromPixelsId.m		getPlaneFromPixelsId.m
getPlaneStackFromImageId.m		getPlaneStackFromImageId.m
getProjectIdsFromDatasetIds.m		getProjectIdsFromDatasetIds.m
getProjectionsFromDataset.m		getProjectionsFromDataset.m
getROITimePoints.m		getROITimePoints.m
getRenderedPlaneFromImageId.m		getRenderedPlaneFromImageId.m
getStackFromPixels.m		getStackFromPixels.m
getUserDefaultGroup.m		getUserDefaultGroup.m
importIncellFiles.m		importIncellFiles.m
intensityMeasureLaunchpad.m		intensityMeasureLaunchpad.m
manualCSV.m		manualCSV.m
max2.m		max2.m
maxOfType.m		maxOfType.m
maxProj.m		maxProj.m
measureLines.m		measureLines.m
measureSpotsInROI.m		measureSpotsInROI.m
min2.m		min2.m
neighboursWithFoci.m		neighboursWithFoci.m
numberOverlay.m		numberOverlay.m
numerals.mat		numerals.mat
omeroJavaForWorkflows.zip		omeroJavaForWorkflows.zip
omeroKeepAlive.m		omeroKeepAlive.m
omxReg.m		omxReg.m
otsu.m		otsu.m
otsu16.m		otsu16.m
parseAffineMatrix.m		parseAffineMatrix.m
pixelCountPerZ.m		pixelCountPerZ.m
readEllipseROIs.m		readEllipseROIs.m
readLineROIs.m		readLineROIs.m
readROIs.m		readROIs.m
saveMaskImage.m		saveMaskImage.m
savePanelsToNewDataset.m		savePanelsToNewDataset.m
selectROIFiles.m		selectROIFiles.m
selectROIFilesForDistanceMeasure.m		selectROIFilesForDistanceMeasure.m
selectROIFilesForEventTimerAndCrop.m		selectROIFilesForEventTimerAndCrop.m
selectROIFilesForFLIPAnalysis.m		selectROIFilesForFLIPAnalysis.m
selectROIFilesForFRAPAnalysis.m		selectROIFilesForFRAPAnalysis.m
selectROIFilesForLineMeasure.m		selectROIFilesForLineMeasure.m
selectROIFilesForVolumeIntensityMeasure.m		selectROIFilesForVolumeIntensityMeasure.m
selectROIFilesForZIntensityMeasure.m		selectROIFilesForZIntensityMeasure.m
setMatrixType.m		setMatrixType.m
setNewImageChannelNames.m		setNewImageChannelNames.m
setPlanes.m		setPlanes.m
showme.m		showme.m
showmeMesh.m		showmeMesh.m
showmeRaw.m		showmeRaw.m
showmeRawLargeScreen.m		showmeRawLargeScreen.m
showmeRawLargeScreenZSections.m		showmeRawLargeScreenZSections.m