Try to get sparse way working with deprecated R functions #163
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| # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
| # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
| # Taken from r4ss as example. 2021-01-27 -Cole | |
| on: [push, pull_request] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: ubuntu-18.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} | |
| # - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@master | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-pandoc@master | |
| - name: Get admb and put in path (Windows) | |
| if: runner.os == 'Windows' | |
| run: | | |
| Invoke-WebRequest -Uri https://github.com/admb-project/admb/releases/download/admb-12.2/admb-12.2-windows.zip -OutFile "D:\a\adnuts\admb-12.2.zip" | |
| Expand-Archive -LiteralPath "D:\a\adnuts\admb-12.2.zip" -DestinationPath "D:\a\adnuts\admb\" | |
| echo "D:\a\adnuts\admb\admb-12.2\bin" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | |
| #dummy | |
| - name: Get admb and put in path (MacOS) | |
| if: runner.os == 'MacOS' | |
| run: | | |
| curl https://github.com/admb-project/admb/releases/download/admb-12.2/admb-12.2-macos-xcode12.zip -L -o admb-12.2.zip | |
| unzip admb-12.2.zip -d /usr/local/bin | |
| rm admb-12.2.zip | |
| ls /usr/local/bin | |
| echo "/usr/local/bin/admb-12.2/bin" >> $GITHUB_PATH | |
| #dummy | |
| - name: Get admb and put in path (Linux) | |
| if: runner.os == 'Linux' | |
| run: | | |
| wget https://github.com/admb-project/admb/releases/download/admb-12.2/admb-12.2-linux.zip | |
| sudo unzip admb-12.2-linux.zip -d /usr/local/bin | |
| sudo chmod 755 /usr/local/bin/admb-12.2/bin/admb | |
| rm admb-12.2-linux.zip | |
| echo "/usr/local/bin/admb-12.2/bin" >> $GITHUB_PATH | |
| # dummy | |
| # - name: Compile model and run | |
| # run: | | |
| # cd tests/simple | |
| # admb simple.tpl | |
| # shell: bash | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| while read -r cmd | |
| do | |
| eval sudo $cmd | |
| done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "18.04"))') | |
| shell: bash | |
| #dummy | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| remotes::install_cran("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "error", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |