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Add stigrefs after references from controls
Move the step of adding a stigref to a later stage in the process, specifically from the moment rule.yml files are loaded to the time when references from controls are already added to rules. This change will allow us in future to use control file as the source of stigids. Up until now we can't do it because adding stigrefs depend on existence of stigid key in references in the rule object. If we want to add stigids from control files we need to add stigrefs after stigids are added, which means after controls are processed instead of during original rule.yml files.
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