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Canfar run v1.4 #677

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Canfar run v1.4 #677

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Commits on Nov 16, 2022

  1. added Dockerfile and GH action

    @sfarrens
    sfarrens committed Nov 16, 2022
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  2. added make dependency

    @sfarrens
    sfarrens committed Nov 16, 2022
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Commits on May 15, 2023

  1. notebook

    @martinkilbinger
    martinkilbinger committed May 15, 2023
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Commits on Nov 1, 2023

  1. docker testing

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    martinkilbinger committed Nov 1, 2023
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Commits on Nov 3, 2023

  1. Merge remote-tracking branch 'upstream/develop' into docker_image

    @martinkilbinger
    martinkilbinger committed Nov 3, 2023
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Commits on Nov 8, 2023

  1. Dockerfile tests

    @martinkilbinger
    martinkilbinger committed Nov 8, 2023
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  2. Added cent-os to CI tests

    @martinkilbinger
    martinkilbinger committed Nov 8, 2023
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Commits on Nov 9, 2023

  1. Added pyproject

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    martinkilbinger committed Nov 9, 2023
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Commits on Nov 10, 2023

  1. canfar pyproject update

    @martinkilbinger
    martinkilbinger committed Nov 10, 2023
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  2. cfis vos configs: missing keywords, DR5 added

    @martinkilbinger
    martinkilbinger committed Nov 10, 2023
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Commits on Nov 15, 2023

  1. Testing dockerfile with only conda env installed

    @martinkilbinger
    martinkilbinger committed Nov 15, 2023
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  2. Fixing numpy and astropy versions

    @martinkilbinger
    martinkilbinger committed Nov 15, 2023
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Commits on Nov 17, 2023

  1. installation on canfar working: removed most versions from yml file; … 

    …added init_canfar.sh script
    @martinkilbinger
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  2. Dockerfile for image 0:7, 0:8

    @martinkilbinger
    martinkilbinger committed Nov 17, 2023
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Commits on Nov 19, 2023

  1. Installation of sextractor and psfex with conda

    @martinkilbinger
    martinkilbinger committed Nov 19, 2023
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  2. script to call curl with canfar contained updated, adding NCORE as ar… 

    …gument
    @martinkilbinger
    martinkilbinger committed Nov 19, 2023
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  3. added init scripts for canfar; job_sp added n_smp for further jobs

    @martinkilbinger
    martinkilbinger committed Nov 19, 2023
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  4. script to call curl for canfar container: added resources

    @martinkilbinger
    martinkilbinger committed Nov 19, 2023
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  5. testing input numbers

    @martinkilbinger
    martinkilbinger committed Nov 19, 2023
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Commits on Nov 20, 2023

  1. removed debug msg

    @martinkilbinger
    martinkilbinger committed Nov 20, 2023
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  2. numpy error fixed with version upgrade

    @martinkilbinger
    martinkilbinger committed Nov 20, 2023
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  3. Merge branch 'science_portal_run' of github.com:martinkilbinger/shape… 

    …pipe-1 into science_portal_run
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    martinkilbinger committed Nov 20, 2023
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Commits on Nov 22, 2023

  1. Getting ready for exclusive-one-tile processing

    @martinkilbinger
    martinkilbinger committed Nov 22, 2023
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  2. Added command line option to specify exclusive ID for processing

    @martinkilbinger
    martinkilbinger committed Nov 22, 2023
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  3. Merge remote-tracking branch 'origin/exclusive' into science_portal_run

    @martinkilbinger
    martinkilbinger committed Nov 22, 2023
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Commits on Nov 24, 2023

  1. curl script exclusive ID

    @martinkilbinger
    martinkilbinger committed Nov 24, 2023
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  2. Dockerfile conda -> source activate

    @martinkilbinger
    martinkilbinger committed Nov 24, 2023
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  3. Merge remote-tracking branch 'origin/docker_image' into docker_image 

    Conflicts:
	Dockerfile
	environment.yml
	scripts/sh/init_canfar.sh
    @martinkilbinger
    martinkilbinger committed Nov 24, 2023
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  4. Merge branch 'docker_image' of github.com:martinkilbinger/shapepipe-1… 

    … into docker_image
    @martinkilbinger
    martinkilbinger committed Nov 24, 2023
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  5. comment added

    @martinkilbinger
    martinkilbinger committed Nov 24, 2023
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  6. Updated Dockerfile

    @martinkilbinger
    martinkilbinger committed Nov 24, 2023
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  7. running with exclusive ID

    @martinkilbinger
    martinkilbinger committed Nov 24, 2023
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Commits on Nov 25, 2023

  1. exp runs

    @martinkilbinger
    martinkilbinger committed Nov 25, 2023
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  2. local curl script NCORES -> 1

    @martinkilbinger
    martinkilbinger committed Nov 25, 2023
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Commits on Nov 28, 2023

  1. Renamed science-portal scripts (local/remote)

    @martinkilbinger
    martinkilbinger committed Nov 28, 2023
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Commits on Dec 1, 2023

  1. trying to run Pi

    @martinkilbinger
    martinkilbinger committed Dec 1, 2023
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  2. Merge remote-tracking branch 'origin/science_portal_run' into exclusive

    @martinkilbinger
    martinkilbinger committed Dec 1, 2023
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  3. numpy -> 1.22 to avoid asscalar bug

    @martinkilbinger
    martinkilbinger committed Dec 1, 2023
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Commits on Dec 3, 2023

  1. aux script to create links for exposure output runs for tile

    @martinkilbinger
    martinkilbinger committed Dec 3, 2023
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  2. Merge remote-tracking branch 'origin/science_portal_run' into exclusive

    @martinkilbinger
    martinkilbinger committed Dec 3, 2023
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  3. Added aux script to update runs log file

    @martinkilbinger
    martinkilbinger committed Dec 3, 2023
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  4. update runs log file script: deal with multiple runs of same module

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    martinkilbinger committed Dec 3, 2023
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Commits on Dec 4, 2023

  1. run_log: added function get_all_dirs

    @martinkilbinger
    martinkilbinger committed Dec 4, 2023
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  2. Fixed new function get_all_dirs

    @martinkilbinger
    martinkilbinger committed Dec 4, 2023
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  3. Fixed (as for MCCD) FITS key bug

    @martinkilbinger
    martinkilbinger committed Dec 4, 2023
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  4. Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 in… 

    …to science_portal_run
    @martinkilbinger
    martinkilbinger committed Dec 4, 2023
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  5. vignet makers: can use last and all in additional input inage directo… 

    …ries
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    martinkilbinger committed Dec 4, 2023
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Commits on Dec 8, 2023

  1. Dockerfile + jupyter, activate

    @martinkilbinger
    martinkilbinger committed Dec 8, 2023
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  2. file handler raises error if no process

    @martinkilbinger
    martinkilbinger committed Dec 8, 2023
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  3. combine mask outputs

    @martinkilbinger
    martinkilbinger committed Dec 8, 2023
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Commits on Dec 13, 2023

  1. canfar curl command: added kind (tile, exp) as option

    @martinkilbinger
    martinkilbinger committed Dec 13, 2023
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  2. curl remote job script init_run_exclusive_canfar: command line option… 

    …s properly
    @martinkilbinger
    martinkilbinger committed Dec 13, 2023
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Commits on Dec 14, 2023

  1. curl local command: added -k kind

    @martinkilbinger
    martinkilbinger committed Dec 14, 2023
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Commits on Dec 15, 2023

  1. summary missing ID 32 fixed (?)

    @martinkilbinger
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  2. canfar scripts command line options

    @martinkilbinger
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  3. curl canfar local script added job, kind

    @martinkilbinger
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  4. Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 in… 

    …to science_portal_run
    @martinkilbinger
    martinkilbinger committed Dec 15, 2023
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  5. Merge pull request #4 from martinkilbinger/science_portal_run 

    Science portal run
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Commits on Dec 17, 2023

  1. SP ngmxix (job 128) running on canfar

    @martinkilbinger
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  2. curl canfar local script updated

    @martinkilbinger
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  3. Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 in… 

    …to exclusive

Conflicts:
	scripts/sh/curl_canfar_local.sh
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Commits on Dec 19, 2023

  1. curl scripts updated

    @martinkilbinger
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  2. Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 in… 

    …to exclusive
    @martinkilbinger
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  3. run summary more OO

    @martinkilbinger
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  4. Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 in… 

    …to exclusive
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Commits on Dec 21, 2023

  1. update_runs_log_file script: fixed bug when run dir is empty

    @martinkilbinger
    martinkilbinger committed Dec 21, 2023
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  2. improved canfar job scripts; fixed some make cat bugs

    @martinkilbinger
    martinkilbinger committed Dec 21, 2023
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  3. added curl to Dockerimage

    @martinkilbinger
    martinkilbinger committed Dec 21, 2023
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  4. Merge remote-tracking branch 'origin/exclusive' into exclusive

    @martinkilbinger
    martinkilbinger committed Dec 21, 2023
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  5. Remove temp hack from mask

    @martinkilbinger
    martinkilbinger committed Dec 21, 2023
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  6. Merge branch 'exclusive' of github.com:martinkilbinger/shapepipe-1 in… 

    …to exclusive
    @martinkilbinger
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  7. removed unused code from mask

    @martinkilbinger
    martinkilbinger committed Dec 21, 2023
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  8. Merge pull request #3 from martinkilbinger/exclusive 

    Canfar science portal
    @martinkilbinger
    martinkilbinger authored Dec 21, 2023
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  9. Merge remote-tracking branch 'origin/develop' into develop

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Commits on Dec 23, 2023

  1. curl scripts updated

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Commits on Dec 25, 2023

  1. combine psf validation files: preles now with prepare_tiles_for_final… 

    ….bash
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  2. Update post_processing.md 

    post processing doc: linked to (new) vos_retrieve file
    @martinkilbinger
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  3. prepare tiles script loop tests

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  4. Merge branch 'p3' of github.com:martinkilbinger/shapepipe-1 into p3

    @martinkilbinger
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  5. curl canfar local script minor change

    @martinkilbinger
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  6. added vos doc md file

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  7. Update post_processing.md

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  8. Update vos_retrieve.md

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  9. Update vos_retrieve.md

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  10. Update vos_retrieve.md

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  11. Update vos_retrieve.md

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  12. Update vos_retrieve.md 

    copied vos sections
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  13. Update vos_retrieve.md

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  14. Update vos_retrieve.md

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  15. combine runs script renamed

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  16. Merge branch 'p3' of github.com:martinkilbinger/shapepipe-1 into p3

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  17. Update post_processing.md 

    cleaned up psf post proc
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Commits on Dec 26, 2023

  1. P3 proceesing to final cat

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  2. Merge branch 'p3' of github.com:martinkilbinger/shapepipe-1 into p3

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  3. Merge branch 'develop' into p3

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  4. Merge pull request #5 from martinkilbinger/p3 

    P3
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Commits on Jan 6, 2024

  1. config files updated

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Commits on Jan 15, 2024

  1. PSFEx interp runner: allowing all: for ME_DOT_PSF_PDIRS

    @martinkilbinger
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  2. init run exc script: added -d option; updates

    @martinkilbinger
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  3. job sp canfar script: remove old vos upload code

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  4. summary create library and param files

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  5. minor changes

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  6. curl local script: now working with -e ID and -f file_IDs, in dry and… 

    … real run
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Commits on Jan 16, 2024

  1. summary: fixed main path, verbose

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  2. Started canfar howto

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  3. Added summary run notebook

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Commits on Jan 17, 2024

  1. psfex_interp: continue instead of error if one of the .psf files not … 

    …found
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  2. fixed symlink config files

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    martinkilbinger committed Jan 17, 2024
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  3. Updated summary run

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  4. revert to main psfex in link exp for tiles script

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  5. curl job script: remoging session logs

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  6. comments

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  7. Merge pull request #6 from martinkilbinger/P7 

    Towards pre-v2 re-run of patches on canfar
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Commits on Jan 19, 2024

  1. Update canfar.md 

    Started md and cleanup of canfar doc
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  2. Update canfar.md 

    continue editing
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  3. Update canfar.md 

    added monitoring and status
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  4. Update canfar.md 

    monitoring
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  5. Merge pull request #8 from martinkilbinger/martinkilbinger-patch-1 

    Update canfar.md
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  6. Merge pull request #7 from martinkilbinger/martinkilbinger-canfar-doc 

    Update canfar.md
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Commits on Jan 26, 2024

  1. updated canfar doc

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  2. script with akaha lib to count headlerss jobs

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  3. cleaned up curl submit script

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    martinkilbinger committed Jan 26, 2024
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  4. minor modifs to summary

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    martinkilbinger committed Jan 26, 2024
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  5. Removed VM_HOME; jon sp canfar cleaned up

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Commits on Jan 30, 2024

  1. Dockerfile cleand up

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Commits on Feb 1, 2024

  1. summary params minor bug fixed

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  2. major bugx fixed: N_SMP was n_SMP, not propagated

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    martinkilbinger committed Feb 1, 2024
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  3. major bugx fixed: N_SMP was n_SMP, not propagated

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    martinkilbinger committed Feb 1, 2024
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  4. summary nb

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Commits on Feb 11, 2024

  1. sumamry updated

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  2. terminal title from within curl script

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  3. Update tiles_P7.txt 

    remove 000.000
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    martinkilbinger authored Feb 11, 2024
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  4. Merge pull request #9 from martinkilbinger/P7 

    Canfar job limit
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    martinkilbinger authored Feb 11, 2024
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  5. merged Dockerfile from docker_image

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Commits on Feb 23, 2024

  1. Merge remote-tracking branch 'origin/develop' into develop

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  2. monitoring and job handling scripts; small modifs, output; canfar pip… 

    …eline job description to docs/source
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  3. Merge pull request #10 from martinkilbinger/curl 

    monitoring
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    martinkilbinger authored Feb 23, 2024
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Commits on Mar 5, 2024

  1. combine run script: flag_tile and flag_exp as diff options

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Commits on Mar 6, 2024

  1. mask runer excluding processed files working

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  2. combine runs for masks: changed output target dir name

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    martinkilbinger committed Mar 6, 2024
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  3. summary bug fixed

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    martinkilbinger committed Mar 6, 2024
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  4. comment removed

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  5. style

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  6. Merge pull request #11 from martinkilbinger/mask 

    Mask runner skip processing if output file exists
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  7. t branMerge remote-tracking branch 'origin/develop' into develop

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  8. Merge remote-tracking branch 'upstream/develop' into develop

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  9. Merge remote-tracking branch 'origin/develop' into docker_image

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  10. Delete scripts/sh/init_canfar.sh

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    martinkilbinger authored Mar 6, 2024
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  11. Merge pull request #13 from martinkilbinger/docker_image 

    Docker image
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    martinkilbinger authored Mar 6, 2024
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  12. Merge remote-tracking branch 'origin/develop' into develop

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  13. Merge remote-tracking branch 'origin/develop' into plot_spectro

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  14. Merge pull request #14 from martinkilbinger/plot_spectro 

    spectroscopic data for plotting
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  15. Merge remote-tracking branch 'origin/develop' into develop

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  16. remove centos ci

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    martinkilbinger committed Mar 6, 2024
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  17. Merge branch 'develop' of github.com:martinkilbinger/shapepipe-1 into… 

    … develop
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  18. repaired plot spectro notebook

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    martinkilbinger committed Mar 6, 2024
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  19. added doc string

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  20. Merge branch 'develop' of github.com:martinkilbinger/shapepipe-1 into… 

    … develop
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  21. python example runner: added back mccd and pysap

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  22. corrected typo in doc string

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    martinkilbinger committed Mar 6, 2024
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Commits on Mar 13, 2024

  1. updated canfar pipeline doc

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    martinkilbinger committed Mar 13, 2024
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  2. fixed combined mask input dir

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    martinkilbinger committed Mar 13, 2024
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  3. added parameters to final cat

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    martinkilbinger committed Mar 13, 2024
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  4. summary

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    martinkilbinger committed Mar 13, 2024
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  5. Removed rarely used ngmix njob/ngal options; splits computed automati… 

    …cally
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  6. canfar init + run job: removed prev Ms and Mc dirs for job 256

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    martinkilbinger committed Mar 13, 2024
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  7. merge sep cats: error if ngmix #HDUs < 6

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  8. Merge pull request #15 from martinkilbinger/cleanup_canfar 

    Cleanup canfar
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    martinkilbinger authored Mar 13, 2024
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