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@CostaLab

CostaLab

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  1. reg-gen reg-gen Public

    Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

    Python 106 30

  2. CrossTalkeR CrossTalkeR Public

    R package to do the Ligand Receptor Analysis Visualization

    Jupyter Notebook 41 10

  3. scopen scopen Public

    scOpen: single-cell open chromatin analysis via NMF modelling

    Python 25 4

  4. MOJITOO MOJITOO Public

    MOJITOO: a fast and universal method for integration of multimodal single cell data

    R 10

  5. sc2marker sc2marker Public

    Surface Marker Detection Using Single Cell Data

    HTML 9 2

  6. CimpleG CimpleG Public

    CimpleG, an R package to find (small) CpG signatures.

    R 6

Repositories

Showing 10 of 40 repositories
  • bulk_RNASeq Public

    Bulk RNAseq R pipeline

    CostaLab/bulk_RNASeq’s past year of commit activity
    R 0 0 0 0 Updated Jan 13, 2025
  • pyCrossTalkeR Public
    CostaLab/pyCrossTalkeR’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jan 13, 2025
  • PILOT-GM-VAE Public

    Patient-Level Analysis of Single Cell Disease Atlas with Optimal Transport of Gaussian Mixtures Variational Autoencoders

    CostaLab/PILOT-GM-VAE’s past year of commit activity
    0 MIT 0 0 0 Updated Jan 13, 2025
  • phlower Public

    Use hodge decomposition for trajectory analysis

    CostaLab/phlower’s past year of commit activity
    Python 4 AGPL-3.0 0 0 0 Updated Jan 10, 2025
  • CrossTalkeR Public

    R package to do the Ligand Receptor Analysis Visualization

    CostaLab/CrossTalkeR’s past year of commit activity
    Jupyter Notebook 41 MIT 10 5 0 Updated Jan 10, 2025
  • LR2TF Public
    CostaLab/LR2TF’s past year of commit activity
    R 0 0 0 0 Updated Dec 9, 2024
  • PILOT Public

    Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)

    CostaLab/PILOT’s past year of commit activity
    Python 16 MIT 3 2 0 Updated Nov 22, 2024
  • reg-gen Public

    Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

    CostaLab/reg-gen’s past year of commit activity
    Python 106 30 60 1 Updated Nov 16, 2024
  • sigurd Public

    Using single cell genotype data, the cells are annotated and analysed.

    CostaLab/sigurd’s past year of commit activity
    R 6 0 0 0 Updated Nov 12, 2024
  • MOJITOO Public

    MOJITOO: a fast and universal method for integration of multimodal single cell data

    CostaLab/MOJITOO’s past year of commit activity
    R 10 0 0 0 Updated Oct 23, 2024
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