add dim_reduce to aggregates, refactor patch utils #1110
Workflow file for this run
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| # Run full test suite using conda env and all optional deps. | |
| name: TestCode | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| paths: | |
| - 'pyproject.toml' | |
| - '**.py' | |
| - '.github/workflows/*.yml' | |
| env: | |
| # used to manually trigger cache reset. Just increment if needed. | |
| CACHE_NUMBER: 2 | |
| # Cancel previous runs when this one starts. | |
| concurrency: | |
| group: TestCode-${{ github.event.pull_request.number || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| # Runs the tests on combinations of the supported python/os matrix. | |
| test_code: | |
| timeout-minutes: 25 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.10', '3.11', "3.12"] | |
| # only run if CI isn't turned off | |
| if: github.event_name == 'push' || !contains(github.event.pull_request.labels.*.name, 'no_ci') | |
| env: | |
| # set conda environment file with dependencies | |
| env_file: "environment.yml" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "get tags" | |
| run: | | |
| git fetch --tags --force # Retrieve annotated tags. | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: '2.0.2-1' # versions: https://github.com/mamba-org/micromamba-releases | |
| environment-file: environment.yml | |
| init-shell: >- | |
| bash | |
| powershell | |
| cache-environment: true | |
| post-cleanup: 'all' | |
| # Not sure why this is needed but it appears to be the case | |
| - name: fix env | |
| shell: bash -l {0} | |
| run: | | |
| micromamba shell init --shell bash --root-prefix=~/micromamba | |
| eval "$(micromamba shell hook --shell bash)" | |
| micromamba activate dascore | |
| - name: install dascore | |
| shell: bash -el {0} | |
| run: | | |
| python -m pip install -e .[test,all] | |
| - name: set data cache path | |
| shell: bash -el {0} | |
| run: | | |
| echo "DATA_CACHE_PATH=$(python -c "import pooch; print(pooch.os_cache('dascore'))")" >> $GITHUB_ENV | |
| - name: cache test data | |
| uses: actions/cache@v3 | |
| with: | |
| enableCrossOsArchive: true | |
| path: ${{ env.DATA_CACHE_PATH }} | |
| key: DATA_${{ env.CACHE_NUMBER }} | |
| # Print out the package info for current environment | |
| - name: print package info | |
| shell: bash -el {0} | |
| run: | | |
| micromamba info | |
| micromamba list | |
| # Runs test suite and calculates coverage | |
| - name: run test suite | |
| shell: bash -el {0} | |
| run: ./.github/test_code.sh | |
| # Runs examples in docstrings | |
| - name: test docstrings | |
| shell: bash -el {0} | |
| run: ./.github/test_code.sh doctest | |
| # Upload coverage files | |
| - uses: codecov/codecov-action@v4 | |
| with: | |
| fail_ci_if_error: false | |
| files: ./coverage.xml | |
| flags: unittests | |
| name: PR_tests | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| # This is a very useful step for debugging, it allows you to ssh into the CI | |
| # machine (https://github.com/marketplace/actions/debugging-with-tmate). | |
| # | |
| #- name: Setup tmate session | |
| # uses: mxschmitt/action-tmate@v3 |