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updated samplesheet readme
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mattheww95 committed Oct 23, 2024
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Expand Up @@ -85,6 +85,7 @@ Options:
-h, --help Show this message and exit.
```

The `samplesheet` command can be used to create and validate sample sheet from a directory of NGS data. The `schema_input.json` file is downloaded directly from the main mikrokondo repository each time so this utility will update with the pipeline. You can still pass a pre-existing `schema_input.json` file to the utility if you do not have internet access or you are using an older version of the pipeline that is no longer supported.

The `samplesheet` option produces the following output:

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