feat: updated retina atlases (#2359)

DataBiosphere · Jan 23, 2024 · f5cf579 · f5cf579
1 parent aa3b0ea
commit f5cf579
Show file tree

Hide file tree

Showing 2 changed files with 14 additions and 25 deletions.
diff --git a/next/constants/datasets.ts b/next/constants/datasets.ts
@@ -1,6 +1,5 @@
 import { buildDataset } from "../utils/datasets";
 
-const HOMO_SAPIENS = "Homo sapiens";
 const NORMAL = "normal";
 const TODO = "TODO";
 
@@ -18,21 +17,6 @@ export const DATASETS = {
       [TODO],
       "Rui Chen (Baylor College of Medicine)"
     ),
-    buildDataset(
-      [NORMAL],
-      6061,
-      [TODO],
-      ["10x 3'"],
-      [TODO],
-      "Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing",
-      {
-        doi: "10.1016/j.exer.2019.05.001",
-        officialHcaPublication: null,
-        publicationTitle:
-          "Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing",
-        publicationUrl: "https://pubmed.ncbi.nlm.nih.gov/31075224/",
-      }
-    ),
     // Rui Chen (Baylor College of Medicine).
     buildDataset(
       [NORMAL],

diff --git a/next/constants/networks.ts b/next/constants/networks.ts
@@ -97,18 +97,23 @@ export const NETWORKS: Network[] = [
   {
     atlases: [
       {
+        code: [
+          {
+            label: "https://github.com/RCHENLAB/HRCA_reproducibility",
+            url: "https://github.com/RCHENLAB/HRCA_reproducibility",
+          },
+        ],
         contact: { email: "[email protected]" },
-        coordinators: [{ fullName: "Rui Chen" }, { fullName: "Ayellet Segrè" }],
+        coordinators: [{ fullName: "Rui Chen" }],
         cxgId: "4c6eaf5c-6d57-4c76-b1e9-60df8c655f1e",
         datasets: [
-          "e090445c-6971-4212-bc5f-ae4ec3914102",
-          "1dddae6e-3753-48af-b20e-fa22abad125d",
-          "30dc3964-1135-4b56-b393-ce2dcbc6e379",
-          "8185730f-4113-40d3-9cc3-929271784c2b",
-          "07d5987e-7f9e-4f34-b0fb-a185a35504f5",
-          // "4bec484d-ca7a-47b4-8d48-8830e06ad6db", // TODO(cc) sourced from Bionetworks coverage
-          // "4f4f0193-ede8-4a82-8cb0-7a0a22f06e63", // TODO(cc) sourced from Bionetworks coverage
-          // "c3354786-c17c-4e53-b4d7-c7afbed5b208", // TODO(cc) sourced from Bionetworks coverage
+          "9c20a245-f2c0-43ae-82c9-2232ec6b594f", // Liang, ..., Chen.
+          "1dddae6e-3753-48af-b20e-fa22abad125d", // Cowan, ..., Roska.
+          "e090445c-6971-4212-bc5f-ae4ec3914102", // Orozco, ..., Hackney.
+          "30dc3964-1135-4b56-b393-ce2dcbc6e379", // Yan, ..., Sanes.
+          "8185730f-4113-40d3-9cc3-929271784c2b", // Lukowski, ..., Wong.
+          "07d5987e-7f9e-4f34-b0fb-a185a35504f5", // Menon, ..., Hafler.
+          "4bec484d-ca7a-47b4-8d48-8830e06ad6db", // Voigt, ..., Scheetz.
         ],
         externalDatasets: DATASETS.eye,
         integratedAtlases: [],