deploy: ddfeb70

dev/scripts/SLURM.html

@@ -426,7 +426,7 @@ <h2>Usage<a class="headerlink" href="#usage" title="Link to this heading">¶</a>
   Note: files will be copied here only after all jobs have finished, so most IO happens on
   a work directory, which can use IO-optimized cluster storage (see --work).
 --work: directory with fast filesystem on cluster
-  (default: $HPCWORK/fastsurfer-processing/20240930-144528)
+  (default: $HPCWORK/fastsurfer-processing/20241001-190240)
   NOTE: THIS SCRIPT considers this directory to be owned by this script and job!
   No modifications should be made to the directory after the job is started until it is
   finished (if the job fails, cleanup of this directory may be necessary) and it should be

dev/scripts/recon_surf.html

@@ -650,6 +650,10 @@ <h2>Usage help text<a class="headerlink" href="#usage-help-text" title="Link to
                             https://surfer.nmr.mgh.harvard.edu/registration.html
                             for free to obtain it if you do not have FreeSurfer
                             installed already.
+  --base                  For longitudinal template (base) creation.
+  --long &lt;baseid&gt;         For longitudinal time point creation, pass the ID of
+                            the base (template) which needs to exist already in
+                            the same subjects_dir.
   -h --help               Print Help
 
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