Subject directory should default to environment SUBJECTS_DIR variable

Fix initialization of sd variable in run_fastsurfer.sh
Deep-MI · Sep 9, 2024 · 945847f · 945847f
1 parent 4557d3b
commit 945847f
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/run_fastsurfer.sh b/run_fastsurfer.sh
@@ -37,6 +37,7 @@ reconsurfdir="$FASTSURFER_HOME/recon_surf"
 
 # Regular flags defaults
 subject=""
+sd="$SUBJECTS_DIR"
 t1=""
 t2=""
 merged_segfile=""