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Quarto GHA Workflow Runner committed Jul 25, 2023
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2 changes: 1 addition & 1 deletion .nojekyll
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42 changes: 22 additions & 20 deletions core/usage.html
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Expand Up @@ -274,26 +274,28 @@ <h3 data-number="1.1" class="anchored" data-anchor-id="configuration-file"><span
<span id="cb2-14"><a href="#cb2-14" aria-hidden="true" tabindex="-1"></a><span class="dt">flow</span> <span class="op">=</span> <span class="st">"output/flow.arrow"</span> <span class="co"># optional, default "output/flow.arrow"</span></span>
<span id="cb2-15"><a href="#cb2-15" aria-hidden="true" tabindex="-1"></a><span class="dt">basin</span> <span class="op">=</span> <span class="st">"output/basin.arrow"</span> <span class="co"># optional, default "output/basin.arrow"</span></span>
<span id="cb2-16"><a href="#cb2-16" aria-hidden="true" tabindex="-1"></a><span class="dt">control</span> <span class="op">=</span> <span class="st">"output/control.arrow"</span> <span class="co"># optional, default "output/control.arrow"</span></span>
<span id="cb2-17"><a href="#cb2-17" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb2-18"><a href="#cb2-18" aria-hidden="true" tabindex="-1"></a><span class="co"># Specific tables can also go into Arrow files rather than the GeoPackage.</span></span>
<span id="cb2-19"><a href="#cb2-19" aria-hidden="true" tabindex="-1"></a><span class="co"># For large tables this can benefit from better compressed file sizes.</span></span>
<span id="cb2-20"><a href="#cb2-20" aria-hidden="true" tabindex="-1"></a><span class="co"># This is optional, tables are retrieved from the GeoPackage if not specified in the TOML.</span></span>
<span id="cb2-21"><a href="#cb2-21" aria-hidden="true" tabindex="-1"></a><span class="kw">[</span><span class="dt">basin</span><span class="kw">]</span></span>
<span id="cb2-22"><a href="#cb2-22" aria-hidden="true" tabindex="-1"></a><span class="dt">forcing</span> <span class="op">=</span> <span class="st">"forcing.arrow"</span></span>
<span id="cb2-23"><a href="#cb2-23" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb2-24"><a href="#cb2-24" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb2-25"><a href="#cb2-25" aria-hidden="true" tabindex="-1"></a><span class="kw">[</span><span class="dt">solver</span><span class="kw">]</span></span>
<span id="cb2-26"><a href="#cb2-26" aria-hidden="true" tabindex="-1"></a><span class="dt">algorithm</span> <span class="op">=</span> <span class="st">"QNDF"</span> <span class="co"># optional, default "QNDF"</span></span>
<span id="cb2-27"><a href="#cb2-27" aria-hidden="true" tabindex="-1"></a><span class="co"># autodiff can only be set to true for implicit solvers, but is not yet supported</span></span>
<span id="cb2-28"><a href="#cb2-28" aria-hidden="true" tabindex="-1"></a><span class="dt">autodiff</span> <span class="op">=</span> <span class="cn">false</span> <span class="co"># optional, default false</span></span>
<span id="cb2-29"><a href="#cb2-29" aria-hidden="true" tabindex="-1"></a><span class="co"># saveat can be a number, which is the saving interval in seconds, or</span></span>
<span id="cb2-30"><a href="#cb2-30" aria-hidden="true" tabindex="-1"></a><span class="co"># it can be a list of numbers, which are the times in seconds since start that are saved</span></span>
<span id="cb2-31"><a href="#cb2-31" aria-hidden="true" tabindex="-1"></a><span class="dt">saveat</span> <span class="op">=</span> <span class="op">[]</span> <span class="co"># optional, default [], which will save every timestep</span></span>
<span id="cb2-32"><a href="#cb2-32" aria-hidden="true" tabindex="-1"></a><span class="dt">adaptive</span> <span class="op">=</span> <span class="cn">true</span> <span class="co"># optional, default true</span></span>
<span id="cb2-33"><a href="#cb2-33" aria-hidden="true" tabindex="-1"></a><span class="dt">dt</span> <span class="op">=</span> <span class="fl">0.0</span> <span class="co"># optional, default 0.0</span></span>
<span id="cb2-34"><a href="#cb2-34" aria-hidden="true" tabindex="-1"></a><span class="dt">abstol</span> <span class="op">=</span> <span class="fl">1e-6</span> <span class="co"># optional, default 1e-6</span></span>
<span id="cb2-35"><a href="#cb2-35" aria-hidden="true" tabindex="-1"></a><span class="dt">reltol</span> <span class="op">=</span> <span class="fl">1e-3</span> <span class="co"># optional, default 1e-3</span></span>
<span id="cb2-36"><a href="#cb2-36" aria-hidden="true" tabindex="-1"></a><span class="dt">maxiters</span> <span class="op">=</span> <span class="fl">1e9</span> <span class="co"># optional, default 1e9</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<span id="cb2-17"><a href="#cb2-17" aria-hidden="true" tabindex="-1"></a><span class="dt">compression</span> <span class="op">=</span> <span class="st">"zstd"</span> <span class="co"># optional, default "zstd", also supports "lz4"</span></span>
<span id="cb2-18"><a href="#cb2-18" aria-hidden="true" tabindex="-1"></a><span class="dt">compression_level</span> <span class="op">=</span> <span class="dv">6</span> <span class="co"># optional, default 6</span></span>
<span id="cb2-19"><a href="#cb2-19" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb2-20"><a href="#cb2-20" aria-hidden="true" tabindex="-1"></a><span class="co"># Specific tables can also go into Arrow files rather than the GeoPackage.</span></span>
<span id="cb2-21"><a href="#cb2-21" aria-hidden="true" tabindex="-1"></a><span class="co"># For large tables this can benefit from better compressed file sizes.</span></span>
<span id="cb2-22"><a href="#cb2-22" aria-hidden="true" tabindex="-1"></a><span class="co"># This is optional, tables are retrieved from the GeoPackage if not specified in the TOML.</span></span>
<span id="cb2-23"><a href="#cb2-23" aria-hidden="true" tabindex="-1"></a><span class="kw">[</span><span class="dt">basin</span><span class="kw">]</span></span>
<span id="cb2-24"><a href="#cb2-24" aria-hidden="true" tabindex="-1"></a><span class="dt">forcing</span> <span class="op">=</span> <span class="st">"forcing.arrow"</span></span>
<span id="cb2-25"><a href="#cb2-25" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb2-26"><a href="#cb2-26" aria-hidden="true" tabindex="-1"></a></span>
<span id="cb2-27"><a href="#cb2-27" aria-hidden="true" tabindex="-1"></a><span class="kw">[</span><span class="dt">solver</span><span class="kw">]</span></span>
<span id="cb2-28"><a href="#cb2-28" aria-hidden="true" tabindex="-1"></a><span class="dt">algorithm</span> <span class="op">=</span> <span class="st">"QNDF"</span> <span class="co"># optional, default "QNDF"</span></span>
<span id="cb2-29"><a href="#cb2-29" aria-hidden="true" tabindex="-1"></a><span class="co"># autodiff can only be set to true for implicit solvers, but is not yet supported</span></span>
<span id="cb2-30"><a href="#cb2-30" aria-hidden="true" tabindex="-1"></a><span class="dt">autodiff</span> <span class="op">=</span> <span class="cn">false</span> <span class="co"># optional, default false</span></span>
<span id="cb2-31"><a href="#cb2-31" aria-hidden="true" tabindex="-1"></a><span class="co"># saveat can be a number, which is the saving interval in seconds, or</span></span>
<span id="cb2-32"><a href="#cb2-32" aria-hidden="true" tabindex="-1"></a><span class="co"># it can be a list of numbers, which are the times in seconds since start that are saved</span></span>
<span id="cb2-33"><a href="#cb2-33" aria-hidden="true" tabindex="-1"></a><span class="dt">saveat</span> <span class="op">=</span> <span class="op">[]</span> <span class="co"># optional, default [], which will save every timestep</span></span>
<span id="cb2-34"><a href="#cb2-34" aria-hidden="true" tabindex="-1"></a><span class="dt">adaptive</span> <span class="op">=</span> <span class="cn">true</span> <span class="co"># optional, default true</span></span>
<span id="cb2-35"><a href="#cb2-35" aria-hidden="true" tabindex="-1"></a><span class="dt">dt</span> <span class="op">=</span> <span class="fl">0.0</span> <span class="co"># optional, default 0.0</span></span>
<span id="cb2-36"><a href="#cb2-36" aria-hidden="true" tabindex="-1"></a><span class="dt">abstol</span> <span class="op">=</span> <span class="fl">1e-6</span> <span class="co"># optional, default 1e-6</span></span>
<span id="cb2-37"><a href="#cb2-37" aria-hidden="true" tabindex="-1"></a><span class="dt">reltol</span> <span class="op">=</span> <span class="fl">1e-3</span> <span class="co"># optional, default 1e-3</span></span>
<span id="cb2-38"><a href="#cb2-38" aria-hidden="true" tabindex="-1"></a><span class="dt">maxiters</span> <span class="op">=</span> <span class="fl">1e9</span> <span class="co"># optional, default 1e9</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<p>For more information on the solver options, see the <a href="https://docs.sciml.ai/DiffEqDocs/latest/basics/common_solver_opts/#solver_options">DifferentialEquations.jl docs</a>. Information on the solver algorithms can be found on the <a href="https://docs.sciml.ai/DiffEqDocs/stable/solvers/ode_solve/">ODE solvers page</a>.</p>
</section>
<section id="geopackage-and-arrow-tables" class="level3" data-number="1.2">
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2 changes: 1 addition & 1 deletion python/examples.html
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Expand Up @@ -554,7 +554,7 @@ <h1 data-number="2"><span class="header-section-number">2</span> Update the basi
<span id="cb26-4"><a href="#cb26-4" aria-hidden="true" tabindex="-1"></a>ax <span class="op">=</span> df_flow.pivot_table(index<span class="op">=</span><span class="st">"time"</span>, columns<span class="op">=</span><span class="st">"edge"</span>, values<span class="op">=</span><span class="st">"flow_m3d"</span>).plot()</span>
<span id="cb26-5"><a href="#cb26-5" aria-hidden="true" tabindex="-1"></a>ax.legend(bbox_to_anchor<span class="op">=</span>(<span class="fl">1.3</span>, <span class="dv">1</span>), title<span class="op">=</span><span class="st">"Edge"</span>)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
<div class="cell-output cell-output-display" data-execution_count="26">
<pre><code>&lt;matplotlib.legend.Legend at 0x7f74459892d0&gt;</code></pre>
<pre><code>&lt;matplotlib.legend.Legend at 0x7f33deef3e50&gt;</code></pre>
</div>
<div class="cell-output cell-output-display">
<p><img src="examples_files/figure-html/cell-27-output-2.png" width="744" height="412"></p>
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