devops 5.3

DiamondLightSource · May 26, 2023 · 072b5ed · 072b5ed
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diff --git a/.dae-devops/Makefile b/.dae-devops/Makefile
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 # ---------------------------------------------------------------------
@@ -69,4 +69,4 @@ publish_docs:
 	cp -r build/html/* $(DOCS_PUBLISH_ROOT)
 
 
-# dae_devops_fingerprint 87a805e124ba86f4bd65972724e5536e
+# dae_devops_fingerprint aa3527f5e00cc362a1553a0469ebd9c9
diff --git a/.dae-devops/docs/conventions.rst b/.dae-devops/docs/conventions.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name soakdb3
 
 Naming conventions
@@ -31,4 +31,4 @@ repository
     lowercase, hyphens
 
 
-.. # dae_devops_fingerprint 6453b898fcb14e4dd9868afc1f5f1bbb
+.. # dae_devops_fingerprint de902f373135c81a658a17ca32158297
diff --git a/.dae-devops/docs/developing.rst b/.dae-devops/docs/developing.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name soakdb3
 
 Developing
@@ -35,4 +35,4 @@ If you plan to modify the docs, you will need to::
     
 
 
-.. # dae_devops_fingerprint 8ac24e7d475343f39a39816553773644
+.. # dae_devops_fingerprint ee39ac128183f0afe7cce3adcab8dd2a
diff --git a/.dae-devops/docs/devops.rst b/.dae-devops/docs/devops.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name soakdb3
 
 Devops
@@ -44,4 +44,4 @@ Publishing (for the Diamond intranet)::
     
 The Diamond intranet commands are not used for production. The production packaging and publishing are handled in the GitHub Actions workflows mechanism.
 
-.. # dae_devops_fingerprint b8416adabeb5111a7b98ad394109a79c
+.. # dae_devops_fingerprint 643e7f13e98318c4428bcec7cbb50a96
diff --git a/.dae-devops/docs/docs_structure.rst b/.dae-devops/docs/docs_structure.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name soakdb3
 
 About the documentation
@@ -21,4 +21,4 @@ improve most documentation - often immensely.
 
 `More information on this topic. <https://documentation.divio.com>`_
 
-.. # dae_devops_fingerprint 89ddc289acbc5ffa7a523b8ba73caab7
+.. # dae_devops_fingerprint f7cd26a8269dc852910966084289b296
diff --git a/.dae-devops/docs/installing.rst b/.dae-devops/docs/installing.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name soakdb3
 
 Installing
@@ -39,4 +39,4 @@ You can check the version that has been installed by typing::
     $ soakdb3 --version
     $ soakdb3 --version-json
 
-.. # dae_devops_fingerprint 810142999a0b0ce82f84405d06045331
+.. # dae_devops_fingerprint c122d062e225aa06bbb8e80da0553fd7
diff --git a/.dae-devops/docs/testing.rst b/.dae-devops/docs/testing.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name soakdb3
 
 Testing
@@ -31,4 +31,4 @@ This allows peeking in there to see what's been written by the test.
 
 
 
-.. # dae_devops_fingerprint a22a065e5a05bce5ad67e9ba97231e27
+.. # dae_devops_fingerprint 588faee19542e87356f922601b113be3
diff --git a/.dae-devops/prepare_git_dependencies.sh b/.dae-devops/prepare_git_dependencies.sh
@@ -1,7 +1,7 @@
 #!/usr/bin/env bash
 
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 me=${BASH_SOURCE}
@@ -13,4 +13,4 @@ function __install {
 }
 
 
-# dae_devops_fingerprint 753ce12fdda9cc021f8957ddfbdbe801
+# dae_devops_fingerprint b5d67b78d8b53f60536200e8bfa6d4d6
diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 # This file is for use as a devcontainer and a runtime container
@@ -40,4 +40,4 @@ ENV PATH=/venv/bin:$PATH
 ENTRYPOINT ["soakdb3"]
 CMD ["--version"]
 
-# dae_devops_fingerprint 39df2a406e916c32866fa828b95cedb5
+# dae_devops_fingerprint b47bdd9a358105e4dd26f540f42bbf7b
diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json
@@ -1,5 +1,5 @@
 // ********** Please don't edit this file!
-// ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+// ********** It has been generated automatically by dae_devops version 0.5.3.
 // ********** For repository_name soakdb3
 
 // For format details, see https://containers.dev/implementors/json_reference/
@@ -57,4 +57,4 @@
     "postCreateCommand": "pip install -e .[dev]"
 }
 
-// dae_devops_fingerprint 31d735cec5e9348b087931e94ad86201
+// dae_devops_fingerprint 9524218bef5e86a01794006032ad7fcb
diff --git a/.github/CONTRIBUTING.rst b/.github/CONTRIBUTING.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name soakdb3
 
 Contributing to the project
@@ -38,4 +38,4 @@ should follow.
 
 .. _Developer Guide: https://diamondlightsource.github.io/soakdb3/main/developer/how-to/contribute.html
 
-.. # dae_devops_fingerprint 9ece2d6c151df46e92d82ccf45c9798d
+.. # dae_devops_fingerprint 9f9b8d29e13fc36a91cb18e92de3c255
diff --git a/.github/actions/install_requirements/action.yml b/.github/actions/install_requirements/action.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 name: Install requirements
@@ -61,4 +61,4 @@ runs:
       shell: bash
 
 
-# dae_devops_fingerprint 81c2c8158521f1250c495d4b0a6720bd
+# dae_devops_fingerprint 4bec23778f08376d659e5f9a364d8090
diff --git a/.github/dependabot.yml b/.github/dependabot.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 # To get started with Dependabot version updates, you'll need to specify which
@@ -19,4 +19,4 @@ updates:
     schedule:
       interval: "weekly"
 
-# dae_devops_fingerprint 7e737a508027cc9682746bf87ac927c3
+# dae_devops_fingerprint 0f56118bd55142e0710b36f4ac80c196
diff --git a/.github/pages/index.html b/.github/pages/index.html
@@ -1,5 +1,5 @@
 <!-- ********** Please don't edit this file! -->
-<!-- ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523. -->
+<!-- ********** It has been generated automatically by dae_devops version 0.5.3. -->
 <!-- ********** For repository_name soakdb3 -->
 
 <!DOCTYPE html>
@@ -14,4 +14,4 @@
 
 </html>
 
-<!-- dae_devops_fingerprint 51dd2312ce12b60d6d1db9fd11697afa -->
+<!-- dae_devops_fingerprint 928af9be6608752e095084f282661a42 -->
diff --git a/.github/pages/make_switcher.py b/.github/pages/make_switcher.py
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 import json
@@ -102,4 +102,4 @@ def main(args=None):
 if __name__ == "__main__":
     main()
 
-# dae_devops_fingerprint d20329d39ea50acd6e85c5f3ac9ab0bf
+# dae_devops_fingerprint ab3ccbd5659d924b435fbf16b8432c57
diff --git a/.github/workflows/code.yml b/.github/workflows/code.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 name: Code CI
@@ -39,7 +39,7 @@ jobs:
       fail-fast: false
       matrix:
         os: ["ubuntu-latest"] # can add windows-latest, macos-latest
-        python: ["3.10", "3.11"]
+        python: ["3.10"]
         install: ["-e .[dev,docs]"]
         # Make one version be non-editable to test both paths of version code
         include:
@@ -69,6 +69,10 @@ jobs:
       - name: List dependency tree
         run: pipdeptree
 
+      # TODO: Make startup of MySQL able to be configured.
+      - name: Start up the MySQL that comes with Unbuntu
+        run: sudo /etc/init.d/mysql start
+
       - name: Run tests
         run: |
           sudo apt install environment-modules
@@ -212,4 +216,4 @@ jobs:
         with:
           password: ${{ secrets.PYPI_TOKEN }}
 
-# dae_devops_fingerprint cc92d3a654008a26c7e0e9648091e4c3
+# dae_devops_fingerprint adf2b49cc576a9c060e1d3257841b202
diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 name: Docs CI
@@ -56,4 +56,4 @@ jobs:
           publish_dir: .github/pages
           keep_files: true
 
-# dae_devops_fingerprint 07e76c18742a37be1ceacc9c7959ad7a
+# dae_devops_fingerprint b7a223c7e424fa87fa8a411a885477e5
diff --git a/.github/workflows/docs_clean.yml b/.github/workflows/docs_clean.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 name: Docs Cleanup CI
@@ -46,4 +46,4 @@ jobs:
           git commit -am "Removing redundant docs version $DOCS_VERSION"
           git push
 
-# dae_devops_fingerprint 04731d9633eeadad36095a006ca507f9
+# dae_devops_fingerprint ea9d13b83d6931e7a1f8beb23393a10d
diff --git a/.github/workflows/linkcheck.yml b/.github/workflows/linkcheck.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 name: Link Check
@@ -27,4 +27,4 @@ jobs:
       - name: Check links
         run: tox -e docs build -- -b linkcheck
 
-# dae_devops_fingerprint 48c9a6457376f210baf2e716179a3de1
+# dae_devops_fingerprint 577e29e04eaace429f3b265715dd1db0
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 variables:
@@ -87,4 +87,4 @@ package_pip:
 #     # The validate_docs artifacts are in the build/html folder.
 #     - make -f .dae-devops/Makefile publish_docs
 
-# dae_devops_fingerprint 138dfc3a58570e6d90eb4732e7338781
+# dae_devops_fingerprint 7738035675008c0815875d47c0aab949
diff --git a/docs/_static/css/custom.css b/docs/_static/css/custom.css
@@ -1,5 +1,5 @@
 /* ********** Please don't edit this file! */ 
-/* ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523. */ 
+/* ********** It has been generated automatically by dae_devops version 0.5.3. */ 
 /* ********** For repository_name soakdb3 */ 
 
 /* The theme normally has this, but I think it's ok to use the full width of the window in all @media sizes.
@@ -15,4 +15,4 @@
     max-width: 100%;
 }
 
-/* dae_devops_fingerprint db7bb96ebbd13db24e39aa71932fa228 */ 
+/* dae_devops_fingerprint 18b364be4830ff06599c595e92feab70 */ 
diff --git a/docs/conf.py b/docs/conf.py
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 from pathlib import Path
@@ -197,4 +197,4 @@ def setup(app):
     app.connect("source-read", ultimateReplace)
 
 
-# dae_devops_fingerprint 1436ce76b6fbb352ef4be88f7f20ddad
+# dae_devops_fingerprint 1dd14a8b44868cb503a53c4871d7fcaf
diff --git a/pyproject.toml b/pyproject.toml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name soakdb3
 
 [build-system]
@@ -103,4 +103,4 @@ source = ["src", "**/site-packages/"]
 [tool.tox]
 legacy_tox_ini = "[tox]\nskipsdist=True\n\n[testenv:{pre-commit,mypy,pytest,docs}]\n# Don't create a virtualenv for the command, requires tox-direct plugin\ndirect = True\npassenv = *\nallowlist_externals = \n    pytest \n    pre-commit\n    mypy\n    sphinx-build\n    sphinx-autobuild\ncommands =\n    pytest: pytest {posargs}\n    mypy: mypy src tests {posargs}\n    pre-commit: pre-commit run --all-files {posargs}\n    docs: sphinx-{posargs:build -EW --keep-going} -T docs build/html\n"
 
-# dae_devops_fingerprint acfd9f0fe647aa3a3b3fa87e1a07a9f1
+# dae_devops_fingerprint b2c1b99fc8739454fdb7b59260854e73