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make post commentable
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DivingWhale authored Sep 13, 2024
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image:
caption: 'gmx trjconv'
preview_only: true
commentable: true

draft: false
---
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## Step 4: Visualizing the Trajectory in PyMOL
To visualize the processed trajectory in PyMOL, you’ll first need to load a compatible topology file. Since PyMOL can’t read .tpr files, you can either convert the .tpr to a .gro file using `gmx convert-tpr` or use the .gro file from your energy minimization step.

Once the topology file is loaded, you can load the trajectory file (.xtc) into PyMOL. If the trajectory is too large, you can reduce the number of frames loaded into memory by setting an interval.
Once the topology file is loaded, you can load the trajectory file (.xtc) into PyMOL. If the trajectory is too large, you can reduce the number of frames loaded into memory by setting an interval.

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