Merge remote-tracking branch 'origin/develop' into remove_findesmf

DusanJovic-NOAA · Sep 16, 2024 · a0997d1 · a0997d1
2 parents ec4ec28 + 7062191
commit a0997d1
Show file tree

Hide file tree

Showing 154 changed files with 17,591 additions and 6,579 deletions.
diff --git a/.github/workflows/aux.yml b/.github/workflows/aux.yml
@@ -21,7 +21,7 @@ jobs:
       - name: Share helper id
         run: echo -n ${{ github.run_id }} >~/id_file
 
-      - uses: actions/cache@v2
+      - uses: actions/cache@v4
         with:
           path: ~/id_file
           key: helperid-${{ github.event.workflow_run.id }}

diff --git a/.github/workflows/build_test.yml → .github/workflows/build_test._yml b/.github/workflows/build_test.yml → .github/workflows/build_test._yml
@@ -16,12 +16,12 @@ jobs:
       current: ${{ steps.check.outputs.current }}
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v4
 
     - name: Wait for caching source
       run: sleep 30
 
-    - uses: actions/cache@v2
+    - uses: actions/cache@v4
       with:
         path: ~/id_file
         key: helperid-${{ github.run_id }}

diff --git a/CDEPS-interface/cdeps_files.cmake b/CDEPS-interface/cdeps_files.cmake
@@ -41,14 +41,11 @@ list(APPEND cdeps_dshr_files
 
 list(APPEND cdeps_datm_files
   CDEPS/datm/atm_comp_nuopc.F90
-  CDEPS/datm/datm_datamode_cfsr_mod.F90
   CDEPS/datm/datm_datamode_clmncep_mod.F90
   CDEPS/datm/datm_datamode_core2_mod.F90
   CDEPS/datm/datm_datamode_cplhist_mod.F90
   CDEPS/datm/datm_datamode_era5_mod.F90
   CDEPS/datm/datm_datamode_gefs_mod.F90
-  CDEPS/datm/datm_datamode_gfs_mod.F90
-  CDEPS/datm/datm_datamode_gfs_hafs_mod.F90
   CDEPS/datm/datm_datamode_jra_mod.F90
   CDEPS/datm/datm_datamode_simple_mod.F90
 )

diff --git a/MOM6-interface/MOM6 b/MOM6-interface/MOM6
diff --git a/MOM6-interface/mom6_files.cmake b/MOM6-interface/mom6_files.cmake
@@ -36,6 +36,7 @@ list(APPEND mom6_src_files
   MOM6/src/core/MOM_continuity_PPM.F90
   MOM6/src/core/MOM_density_integrals.F90
   MOM6/src/core/MOM_dynamics_split_RK2.F90
+  MOM6/src/core/MOM_dynamics_split_RK2b.F90
   MOM6/src/core/MOM_dynamics_unsplit.F90
   MOM6/src/core/MOM_dynamics_unsplit_RK2.F90
   MOM6/src/core/MOM_forcing_type.F90
@@ -59,6 +60,7 @@ list(APPEND mom6_src_files
   MOM6/src/diagnostics/MOM_sum_output.F90
   MOM6/src/diagnostics/MOM_wave_speed.F90
 
+  MOM6/src/equation_of_state/MOM_EOS_base_type.F90
   MOM6/src/equation_of_state/MOM_EOS.F90
   MOM6/src/equation_of_state/MOM_EOS_Jackett06.F90
   MOM6/src/equation_of_state/MOM_EOS_Roquet_SpV.F90

diff --git a/build.sh b/build.sh
@@ -1,17 +1,10 @@
 #!/bin/bash
 set -eu
-uname_s=$(uname -s)
-if [[ ${uname_s} == Darwin ]]; then
-  UFS_MODEL_DIR=$(greadlink -f -n "${BASH_SOURCE[0]}")
-  UFS_MODEL_DIR=$(dirname "${UFS_MODEL_DIR}")
-  UFS_MODEL_DIR=$(cd "${UFS_MODEL_DIR}" && pwd -P)
-else
-  UFS_MODEL_DIR=$(readlink -f -n "${BASH_SOURCE[0]}")
-  UFS_MODEL_DIR=$(dirname "${UFS_MODEL_DIR}")
-  UFS_MODEL_DIR=$(cd "${UFS_MODEL_DIR}" && pwd -P)
-fi
-echo "UFS MODEL DIR: ${UFS_MODEL_DIR}"
+
+SCRIPT_REALPATH=$(realpath "${BASH_SOURCE[0]}")
+UFS_MODEL_DIR=$(dirname "${SCRIPT_REALPATH}")
 readonly UFS_MODEL_DIR
+echo "UFS MODEL DIR: ${UFS_MODEL_DIR}"
 
 export CC=${CC:-mpicc}
 export CXX=${CXX:-mpicxx}
@@ -26,4 +19,4 @@ for i in ${CMAKE_FLAGS}; do ARR_CMAKE_FLAGS+=("${i}") ; done
 cmake "${UFS_MODEL_DIR}" "${ARR_CMAKE_FLAGS[@]}"
 # Turn off OpenMP threading for parallel builds
 # to avoid exhausting the number of user processes
-OMP_NUM_THREADS=1 make -j "${BUILD_JOBS:-4}" "VERBOSE=${BUILD_VERBOSE:-}"
+OMP_NUM_THREADS=1 make -j "${BUILD_JOBS:-4}" "VERBOSE=${BUILD_VERBOSE:-}"
diff --git a/modulefiles/ufs_common.lua b/modulefiles/ufs_common.lua
@@ -14,8 +14,8 @@ local ufs_modules = {
   {["fms"]             = "2023.04"},
   {["bacio"]           = "2.4.1"},
   {["crtm"]            = "2.4.0"},
-  {["g2"]              = "3.4.5"},
-  {["g2tmpl"]          = "1.10.2"},
+  {["g2"]              = "3.5.1"},
+  {["g2tmpl"]          = "1.13.0"},
   {["ip"]              = "4.3.0"},
   {["sp"]              = "2.5.0"},
   {["w3emc"]           = "2.10.0"},

diff --git a/modulefiles/ufs_derecho.gnu.lua b/modulefiles/ufs_derecho.gnu.lua
@@ -9,7 +9,7 @@ load("mysql/8.0.33")
 
 setenv("LMOD_TMOD_FIND_FIRST","yes")
 prepend_path("MODULEPATH", "/lustre/desc1/scratch/epicufsrt/contrib/modulefiles_extra")
-prepend_path("MODULEPATH", "/glade/work/epicufsrt/contrib/spack-stack/derecho/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/glade/work/epicufsrt/contrib/spack-stack/derecho/spack-stack-1.6.0/envs/upp-addon-env/install/modulefiles/Core")
 
 unload("ncarcompilers")
 stack_gnu_ver=os.getenv("stack_gnu_ver") or "12.2.0"

diff --git a/modulefiles/ufs_derecho.intel.lua b/modulefiles/ufs_derecho.intel.lua
@@ -9,7 +9,7 @@ load("mysql/8.0.33")
 
 setenv("LMOD_TMOD_FIND_FIRST","yes")
 prepend_path("MODULEPATH", "/lustre/desc1/scratch/epicufsrt/contrib/modulefiles_extra")
-prepend_path("MODULEPATH", "/glade/work/epicufsrt/contrib/spack-stack/derecho/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/glade/work/epicufsrt/contrib/spack-stack/derecho/spack-stack-1.6.0/envs/upp-addon-env/install/modulefiles/Core")
 
 unload("ncarcompilers")
 stack_intel_ver=os.getenv("stack_intel_ver") or "2021.10.0"

diff --git a/modulefiles/ufs_gaea.intel.lua b/modulefiles/ufs_gaea.intel.lua
@@ -5,7 +5,7 @@ help([[
 
 whatis([===[Loads libraries needed for building the UFS Weather Model on Gaea ]===])
 
-prepend_path("MODULEPATH", "/ncrc/proj/epic/spack-stack/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/ncrc/proj/epic/spack-stack/spack-stack-1.6.0/envs/upp-addon-env/install/modulefiles/Core")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2023.1.0"
 load(pathJoin("stack-intel", stack_intel_ver))

diff --git a/modulefiles/ufs_hera.gnu.lua b/modulefiles/ufs_hera.gnu.lua
@@ -4,7 +4,7 @@ loads UFS Model prerequisites for Hera/GNU
 
 prepend_path("MODULEPATH", "/scratch2/NCEPDEV/stmp1/role.epic/installs/gnu/modulefiles")
 prepend_path("MODULEPATH", "/scratch2/NCEPDEV/stmp1/role.epic/installs/openmpi/modulefiles")
-prepend_path("MODULEPATH", "/scratch2/NCEPDEV/stmp1/role.epic/spack-stack/spack-stack-1.6.0_gnu13/envs/ufs-wm-srw-rocky8/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/scratch2/NCEPDEV/stmp1/role.epic/spack-stack/spack-stack-1.6.0_gnu13/envs/upp-addon-env/install/modulefiles/Core")
 
 stack_gnu_ver=os.getenv("stack_gnu_ver") or "13.3.0"
 load(pathJoin("stack-gcc", stack_gnu_ver))

diff --git a/modulefiles/ufs_hera.intel.lua b/modulefiles/ufs_hera.intel.lua
@@ -2,7 +2,7 @@ help([[
 loads UFS Model prerequisites for Hera/Intel
 ]])
 
-prepend_path("MODULEPATH", "/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/scratch1/NCEPDEV/nems/role.epic/spack-stack/spack-stack-1.6.0/envs/upp-addon-env/install/modulefiles/Core")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2021.5.0"
 load(pathJoin("stack-intel", stack_intel_ver))

diff --git a/modulefiles/ufs_jet.intel.lua b/modulefiles/ufs_jet.intel.lua
@@ -2,7 +2,7 @@ help([[
 loads UFS Model prerequisites for Jet/Intel
 ]])
 
-prepend_path("MODULEPATH", "/mnt/lfs4/HFIP/hfv3gfs/role.epic/spack-stack/spack-stack-1.6.0/envs/unified-env-rocky8/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/contrib/spack-stack/spack-stack-1.6.0/envs/upp-addon-env/install/modulefiles/Core")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2021.5.0"
 load(pathJoin("stack-intel", stack_intel_ver))

diff --git a/modulefiles/ufs_orion.intel.lua b/modulefiles/ufs_orion.intel.lua
@@ -2,7 +2,7 @@ help([[
 loads UFS Model prerequisites for Orion/Intel
 ]])
 
-prepend_path("MODULEPATH", "/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/upp-addon-env/install/modulefiles/Core")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2021.9.0"
 load(pathJoin("stack-intel", stack_intel_ver))

diff --git a/modulefiles/ufs_s4.intel.lua b/modulefiles/ufs_s4.intel.lua
@@ -2,16 +2,25 @@ help([[
 loads UFS Model prerequisites for S4/Intel
 ]])
 
-prepend_path("MODULEPATH", "/data/prod/jedi/spack-stack/spack-stack-1.6.0/envs/unified-env/install/modulefiles/Core")
+prepend_path("MODULEPATH", "/data/prod/jedi/spack-stack/spack-stack-1.6.0/envs/upp-addon-env/install/modulefiles/Core")
 
 stack_intel_ver=os.getenv("stack_intel_ver") or "2021.5.0"
 load(pathJoin("stack-intel", stack_intel_ver))
 
 stack_impi_ver=os.getenv("stack_impi_ver") or "2021.5.0"
 load(pathJoin("stack-intel-oneapi-mpi", stack_impi_ver))
 
+stack_python_ver=os.getenv("stack_python_ver") or "3.10.13"
+load(pathJoin("stack-python", stack_python_ver))
+
+cmake_ver=os.getenv("cmake_ver") or "3.23.1"
+load(pathJoin("cmake", cmake_ver))
+
 load("ufs_common")
 
+nccmp_ver=os.getenv("nccmp_ver") or "1.9.0.1"
+load(pathJoin("nccmp", nccmp_ver))
+
 setenv("CC", "mpiicc")
 setenv("CXX", "mpiicpc")
 setenv("FC", "mpiifort")

diff --git a/modulefiles/ufs_wcoss2.intel.lua b/modulefiles/ufs_wcoss2.intel.lua
@@ -29,8 +29,8 @@ local ufs_modules = {
   {["fms-C"]       = "2023.04"},
   {["bacio"]       = "2.4.1"},
   {["crtm"]        = "2.4.0"},
-  {["g2"]          = "3.4.5"},
-  {["g2tmpl"]      = "1.10.2"},
+  {["g2"]          = "3.5.1"},
+  {["g2tmpl"]      = "1.13.0"},
   {["ip"]          = "3.3.3"},
   {["sp"]          = "2.3.3"},
   {["w3emc"]       = "2.9.2"},

diff --git a/tests/auto-jenkins/jobs/bl.py b/tests/auto-jenkins/jobs/bl.py
@@ -24,9 +24,9 @@ def set_directories(job_obj):
         rtbldir = '/scratch1/NCEPDEV/stmp4/emc.nemspara/FV3_RT/'\
                  f'REGRESSION_TEST'
     elif job_obj.machine == 'jet':
-        workdir = '/lfs4/HFIP/h-nems/emc.nemspara/autort/pr'
-        blstore = '/lfs4/HFIP/h-nems/emc.nemspara/RT/NEMSfv3gfs/'
-        rtbldir = '/lfs4/HFIP/h-nems/emc.nemspara/RT_BASELINE/'\
+        workdir = '/lfs5/HFIP/hfv3gfs/role.epic/h-nems/autort/pr'
+        blstore = '/lfs5/HFIP/hfv3gfs/role.epic/RT/NEMSfv3gfs'
+        rtbldir = '/lfs5/HFIP/hfv3gfs/role.epic/h-nems/RT_BASELINE/'\
                  f'emc.nemspara/FV3_RT/REGRESSION_TEST'
     elif job_obj.machine == 'orion':
         workdir = '/work/noaa/epic-ps/role-epic-ps/autort/tests/auto/pr'

diff --git a/tests/auto-jenkins/jobs/rt.py b/tests/auto-jenkins/jobs/rt.py
@@ -26,7 +26,7 @@ def set_directories(job_obj):
     if job_obj.machine == 'hera':
         workdir = '/scratch1/NCEPDEV/nems/role.epic/autort/pr'
     elif job_obj.machine == 'jet':
-        workdir = '/lfs4/HFIP/hfv3gfs/role.epic/autort/pr'
+        workdir = '/lfs5/HFIP/hfv3gfs/role.epic/h-nems/autort/pr'
     elif job_obj.machine == 'orion':
         workdir = '/work/noaa/epic-ps/role-epic-ps/autort/tests/auto/pr'
     elif job_obj.machine == 'hercules':

diff --git a/tests/auto-jenkins/rt_auto_jenkins.py b/tests/auto-jenkins/rt_auto_jenkins.py
@@ -76,7 +76,7 @@ def delete_pr_dirs(each_pr, machine):
     if machine == 'hera':                                                                                     
         workdir = '/scratch1/NCEPDEV/nems/role.epic/autort/pr'
     elif machine == 'jet':
-        workdir = '/lfs4/HFIP/hfv3gfs/role.epic/autort/pr'
+        workdir = '/lfs5/HFIP/hfv3gfs/role.epic/h-nems/autort/pr'
     elif machine == 'orion':
         workdir = '/work/noaa/epic-ps/role-epic-ps/autort/pr'
     elif machine == 'hercules':
@@ -110,7 +110,7 @@ def delete_rt_dirs(in_dir, machine, workdir):
     if machine == 'hera':                                                                                     
         rt_dir ='/scratch1/NCEPDEV/stmp4/role.epic/FV3_RT' 
     elif machine == 'jet':
-        rt_dir ='/lfs4/HFIP/hfv3gfs/role.epic/RT_BASELINE/'\
+        rt_dir ='/lfs5/HFIP/hfv3gfs/role.epic/h-nems/RT_BASELINE/'\
                f'emc.nemspara/FV3_RT'
     elif machine == 'orion':
         rt_dir = '/work/noaa/stmp/bcurtis/stmp/bcurtis/FV3_RT'

diff --git a/tests/auto-jenkins/start_rt_auto_jenkins.sh b/tests/auto-jenkins/start_rt_auto_jenkins.sh
@@ -14,11 +14,11 @@ elif [[ $HOSTNAME == Hercules-login-* ]]; then
   export PATH=/work/noaa/nems/emc.nemspara/soft/miniconda3/bin:$PATH
   export PYTHONPATH=/work/noaa/nems/emc.nemspara/soft/miniconda3/lib/python3.8/site-packages  
 elif [[ $HOSTNAME == fe* ]]; then
-  export PATH=/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/envs/ufs-weather-model/bin:/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/bin:$PATH
-  export PYTHONPATH=/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/envs/ufs-weather-model/lib/python3.8/site-packages:/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/lib/python3.8/site-packages
+  export PATH=/contrib/spack-stack/miniconda3/23.11.0/envs/ufs-weather-model/bin:/contrib/spack-stack/miniconda3/23.11.0/bin:${PATH}
+  export PYTHONPATH=/contrib/spack-stack/miniconda3/23.11.0/envs/ufs-weather-model/lib/python3.8/site-packages:/contrib/spack-stack/miniconda3/23.11.0/lib/python3.8/site-packages
 elif [[ $HOSTNAME == tfe* ]]; then
-  export PATH=/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/envs/ufs-weather-model/bin:/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/bin:$PATH
-  export PYTHONPATH=/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/envs/ufs-weather-model/lib/python3.8/site-packages:/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/lib/python3.8/site-packages
+  export PATH=/contrib/spack-stack/miniconda3/23.11.0/envs/ufs-weather-model/bin:/contrib/spack-stack/miniconda3/23.11.0/bin:${PATH}
+  export PYTHONPATH=/contrib/spack-stack/miniconda3/23.11.0/envs/ufs-weather-model/lib/python3.8/site-packages:/contrib/spack-stack/miniconda3/23.11.0/lib/python3.8/site-packages
 elif [[ $HOSTNAME == gaea* ]]; then
   export PATH=/lustre/f2/pdata/esrl/gsd/contrib/miniconda3/4.8.3/envs/ufs-weather-model/bin:$PATH
   export PYTHONPATH=/lustre/f2/pdata/esrl/gsd/contrib/miniconda3/4.8.3/lib/python3.8/site-packages

diff --git a/tests/auto/jobs/bl.py b/tests/auto/jobs/bl.py
@@ -24,9 +24,9 @@ def set_directories(job_obj):
         rtbldir = '/scratch1/NCEPDEV/stmp4/emc.nemspara/FV3_RT/'\
                  f'REGRESSION_TEST_{job_obj.compiler.upper()}'
     elif job_obj.machine == 'jet':
-        workdir = '/lfs4/HFIP/h-nems/emc.nemspara/autort/pr'
-        blstore = '/lfs4/HFIP/h-nems/emc.nemspara/RT/NEMSfv3gfs/'
-        rtbldir = '/lfs4/HFIP/h-nems/emc.nemspara/RT_BASELINE/'\
+        workdir = '/lfs5/HFIP/hfv3gfs/role.epic/h-nems/autort/pr'
+        blstore = '/lfs5/HFIP/hfv3gfs/role.epic/RT/NEMSfv3gfs'
+        rtbldir = '/lfs5/HFIP/hfv3gfs/role.epic/h-nems/RT_BASELINE/'\
                  f'emc.nemspara/FV3_RT/REGRESSION_TEST_{job_obj.compiler.upper()}'
     elif job_obj.machine == 'orion':
         workdir = '/work/noaa/nems/emc.nemspara/autort/pr'

diff --git a/tests/auto/jobs/rt.py b/tests/auto/jobs/rt.py
@@ -17,7 +17,7 @@ def set_directories(job_obj):
     if job_obj.machine == 'hera':
         workdir = '/scratch1/NCEPDEV/nems/emc.nemspara/autort/pr'
     elif job_obj.machine == 'jet':
-        workdir = '/lfs4/HFIP/h-nems/emc.nemspara/autort/pr'
+        workdir = '/lfs5/HFIP/hfv3gfs/role.epic/h-nems/autort/pr'
     elif job_obj.machine == 'orion':
         workdir = '/work/noaa/nems/emc.nemspara/autort/pr'
     elif job_obj.machine == 'derecho':

diff --git a/tests/auto/start_rt_auto.sh b/tests/auto/start_rt_auto.sh
@@ -11,8 +11,8 @@ elif [[ $HOSTNAME == Orion-login-* ]]; then
   export PATH=/work/noaa/nems/emc.nemspara/soft/miniconda3/bin:$PATH
   export PYTHONPATH=/work/noaa/nems/emc.nemspara/soft/miniconda3/lib/python3.8/site-packages
 elif [[ $HOSTNAME == fe* ]]; then
-  export PATH=/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/envs/ufs-weather-model/bin:/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/bin:$PATH
-  export PYTHONPATH=/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/envs/ufs-weather-model/lib/python3.8/site-packages:/lfs4/HFIP/hfv3gfs/software/miniconda3/4.8.3/lib/python3.8/site-packages
+  export PATH=/contrib/spack-stack/miniconda3/23.11.0/envs/ufs-weather-model/bin:/contrib/spack-stack/miniconda3/23.11.0/bin:${PATH}
+  export PYTHONPATH=/contrib/spack-stack/miniconda3/23.11.0/envs/ufs-weather-model/lib/python3.8/site-packages:/contrib/spack-stack/miniconda3/23.11.0/lib/python3.8/site-packages
 elif [[ $HOSTNAME == gaea* ]]; then
   export PATH=/lustre/f2/pdata/esrl/gsd/contrib/miniconda3/4.8.3/envs/ufs-weather-model/bin:$PATH
   export PYTHONPATH=/lustre/f2/pdata/esrl/gsd/contrib/miniconda3/4.8.3/lib/python3.8/site-packages

diff --git a/tests/bl_date.conf b/tests/bl_date.conf
@@ -1 +1 @@
-export BL_DATE=20240730
+export BL_DATE=20240909
diff --git a/tests/ci/Jenkinsfile.combined b/tests/ci/Jenkinsfile.combined
@@ -312,14 +312,6 @@ def generateStage(nodeLabel) {
                       echo "Testing concluded...removing labels for $machine from $GIT_URL"
                       git remote -v | grep -w sshorigin > /dev/null 2>&1 && git remote remove sshorigin > /dev/null 2>&1
                       git remote add sshorigin $SSH_ORIGIN > /dev/null 2>&1
-
-                      if [[ -f $WORKSPACE/tests/logs/RT-run-$machine.log ]] ; then
-                         git add $WORKSPACE/tests/logs/RT-run-$machine.log
-                      fi
-                      git commit  --allow-empty -m "[AutoRT] $machine Job Failed!\n\n\n on-behalf-of @ufs-community <[email protected]>"
-
-                      git pull sshorigin $FORK_BRANCH
-                      git push sshorigin HEAD:$FORK_BRANCH
 
                       tar --create --gzip --verbose --dereference --file "${machine_name_logs}.tgz" ${WORKSPACE}/tests/logs/*.log
 
@@ -351,12 +343,18 @@ pipeline {
         GIT_URL = 'https://github.com/ufs-community/ufs-weather-model.git'
     }
     stages {
-        stage('Run SonarQube Testing') {
+        stage('Launch SonarQube') {
             steps {
                 script {
+                    echo "BRANCH_NAME=${env.CHANGE_BRANCH}"
+                    echo "FORK_NAME=${env.CHANGE_FORK}"
+                    echo "CHANGE_URL=${env.CHANGE_URL}"
+                    echo "CHANGE_ID=${env.CHANGE_ID}"
                     build job: '/ufs-weather-model/ufs-wm-sonarqube', parameters: [
                         string(name: 'BRANCH_NAME', value: env.CHANGE_BRANCH ?: 'develop'),
-                        string(name: 'FORK_NAME', value: env.CHANGE_FORK ?: '')
+                        string(name: 'FORK_NAME', value: env.CHANGE_FORK ?: ''),
+                        string(name: 'CHANGE_URL', value: env.CHANGE_URL ?: ''),
+                        string(name: 'CHANGE_ID', value: env.CHANGE_ID ?: '')
                     ], wait: false
                 }
             }

diff --git a/tests/compile.sh b/tests/compile.sh
@@ -12,14 +12,8 @@ function trim {
 
 SECONDS=0
 
-uname_s=$(uname -s)
-if [[ ${uname_s} == Darwin ]]; then
-  greadlnk=$(greadlink -f -n "${BASH_SOURCE[0]}" )
-  MYDIR=$(cd "$(dirname "${greadlnk}" )" && pwd -P)
-else
-  readlnk=$(readlink -f -n "${BASH_SOURCE[0]}" )
-  MYDIR=$(cd "$(dirname "${readlnk}" )" && pwd -P)
-fi
+SCRIPT_REALPATH=$(realpath "${BASH_SOURCE[0]}")
+MYDIR=$(dirname "${SCRIPT_REALPATH}")
 readonly MYDIR
 
 # ----------------------------------------------------------------------