Adds a multi-process test with srf emiss and constituent fluxes

components/eamxx/tests/multi-process/physics_only/CMakeLists.txt

@@ -11,6 +11,7 @@ if (SCREAM_DOUBLE_PRECISION)
       add_subdirectory(mam/shoc_cldfrac_mam4_aci_p3_mam4_optics_rrtmgp)
       add_subdirectory(mam/p3_mam4_wetscav)
       add_subdirectory(mam/shoc_cldfrac_p3_wetscav)
+      add_subdirectory(mam/mam4_srf_online_emiss_mam4_constituent_fluxes)
     endif()
 endif()
 

components/eamxx/tests/multi-process/physics_only/mam/mam4_srf_online_emiss_mam4_constituent_fluxes/CMakeLists.txt

@@ -0,0 +1,53 @@
+INCLUDE (ScreamUtils)
+
+set (TEST_BASE_NAME mam4_srf_online_emiss_mam4_constituent_fluxes)
+set (FIXTURES_BASE_NAME ${TEST_BASE_NAME}_generate_output_nc_files)
+
+# Create the test
+CreateADUnitTest(${TEST_BASE_NAME}
+  LIBS mam
+  LABELS physics mam4_srf_online_emiss mam4_constituent_fluxes
+  MPI_RANKS ${TEST_RANK_START} ${TEST_RANK_END}
+  FIXTURES_SETUP_INDIVIDUAL ${FIXTURES_BASE_NAME}
+)
+
+# Set AD configurable options
+set (ATM_TIME_STEP 1800)
+SetVarDependingOnTestSize(NUM_STEPS 2 5 48)  # 1h 4h 24h
+set (RUN_T0 2021-10-12-45000)
+
+# Ensure test input files are present in the data dir
+GetInputFile(scream/init/${EAMxx_tests_IC_FILE_MAM4xx_72lev})
+GetInputFile(cam/topo/${EAMxx_tests_TOPO_FILE})
+
+# Ensure test input files are present in the data dir
+set (TEST_INPUT_FILES
+  scream/mam4xx/emissions/ne2np4/DMSflux.2010.ne2np4_conserv.POPmonthlyClimFromACES4BGC_c20240726.nc
+  scream/mam4xx/emissions/ne2np4/cmip6_mam4_so2_surf_ne2np4_2010_clim_c20240723.nc
+  scream/mam4xx/emissions/ne2np4/cmip6_mam4_bc_a4_surf_ne2np4_2010_clim_c20240726.nc
+  scream/mam4xx/emissions/ne2np4/cmip6_mam4_num_a1_surf_ne2np4_2010_clim_c20240726.nc
+  scream/mam4xx/emissions/ne2np4/cmip6_mam4_num_a2_surf_ne2np4_2010_clim_c20240726.nc
+  scream/mam4xx/emissions/ne2np4/cmip6_mam4_num_a4_surf_ne2np4_2010_clim_c20240726.nc
+  scream/mam4xx/emissions/ne2np4/cmip6_mam4_pom_a4_surf_ne2np4_2010_clim_c20240726.nc
+  scream/mam4xx/emissions/ne2np4/cmip6_mam4_so4_a1_surf_ne2np4_2010_clim_c20240726.nc
+  scream/mam4xx/emissions/ne2np4/cmip6_mam4_so4_a2_surf_ne2np4_2010_clim_c20240726.nc
+)
+foreach (file IN ITEMS ${TEST_INPUT_FILES})
+  GetInputFile(${file})
+endforeach()
+
+## Copy (and configure) yaml files needed by tests
+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/input.yaml
+               ${CMAKE_CURRENT_BINARY_DIR}/input.yaml)
+configure_file(${CMAKE_CURRENT_SOURCE_DIR}/output.yaml
+               ${CMAKE_CURRENT_BINARY_DIR}/output.yaml)
+
+# Compare output files produced by npX tests, to ensure they are bfb
+include (CompareNCFiles)
+CompareNCFilesFamilyMpi (
+  TEST_BASE_NAME ${TEST_BASE_NAME}
+  FILE_META_NAME ${TEST_BASE_NAME}_output.INSTANT.nsteps_x${NUM_STEPS}.npMPIRANKS.${RUN_T0}.nc
+  MPI_RANKS ${TEST_RANK_START} ${TEST_RANK_END}
+  LABELS physics mam4_srf_online_emiss mam4_constituent_fluxes
+  META_FIXTURES_REQUIRED ${FIXTURES_BASE_NAME}_npMPIRANKS_omp1
+)

components/eamxx/tests/multi-process/physics_only/mam/mam4_srf_online_emiss_mam4_constituent_fluxes/input.yaml

@@ -0,0 +1,45 @@
+%YAML 1.1
+---
+driver_options:
+  atmosphere_dag_verbosity_level: 5
+
+time_stepping:
+  time_step: ${ATM_TIME_STEP}
+  run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
+  number_of_steps: ${NUM_STEPS}
+
+atmosphere_processes:
+  atm_procs_list: [mam4_srf_online_emiss, mam4_constituent_fluxes]
+  schedule_type: Sequential
+  mam4_srf_online_emiss:
+    # MAM4xx-Surface-Emissions
+    srf_remap_file: ""
+    srf_emis_specifier_for_DMS: ${SCREAM_DATA_DIR}/mam4xx/emissions/ne2np4/DMSflux.2010.ne2np4_conserv.POPmonthlyClimFromACES4BGC_c20240726.nc
+    srf_emis_specifier_for_SO2: ${SCREAM_DATA_DIR}/mam4xx/emissions/ne2np4/cmip6_mam4_so2_surf_ne2np4_2010_clim_c20240723.nc
+    srf_emis_specifier_for_bc_a4: ${SCREAM_DATA_DIR}/mam4xx/emissions/ne2np4/cmip6_mam4_bc_a4_surf_ne2np4_2010_clim_c20240726.nc
+    srf_emis_specifier_for_num_a1: ${SCREAM_DATA_DIR}/mam4xx/emissions/ne2np4/cmip6_mam4_num_a1_surf_ne2np4_2010_clim_c20240726.nc
+    srf_emis_specifier_for_num_a2: ${SCREAM_DATA_DIR}/mam4xx/emissions/ne2np4/cmip6_mam4_num_a2_surf_ne2np4_2010_clim_c20240726.nc
+    srf_emis_specifier_for_num_a4: ${SCREAM_DATA_DIR}/mam4xx/emissions/ne2np4/cmip6_mam4_num_a4_surf_ne2np4_2010_clim_c20240726.nc
+    srf_emis_specifier_for_pom_a4: ${SCREAM_DATA_DIR}/mam4xx/emissions/ne2np4/cmip6_mam4_pom_a4_surf_ne2np4_2010_clim_c20240726.nc
+    srf_emis_specifier_for_so4_a1: ${SCREAM_DATA_DIR}/mam4xx/emissions/ne2np4/cmip6_mam4_so4_a1_surf_ne2np4_2010_clim_c20240726.nc
+    srf_emis_specifier_for_so4_a2: ${SCREAM_DATA_DIR}/mam4xx/emissions/ne2np4/cmip6_mam4_so4_a2_surf_ne2np4_2010_clim_c20240726.nc
+
+grids_manager:
+  Type: Mesh Free
+  geo_data_source: IC_FILE
+  grids_names: [Physics GLL]
+  Physics GLL:
+    aliases: [Physics]
+    type: point_grid
+    number_of_global_columns:   218
+    number_of_vertical_levels:   72
+
+initial_conditions:
+  # The name of the file containing the initial conditions for this test.
+  Filename: ${SCREAM_DATA_DIR}/init/${EAMxx_tests_IC_FILE_MAM4xx_72lev}
+  topography_filename: ${TOPO_DATA_DIR}/${EAMxx_tests_TOPO_FILE}
+
+# The parameters for I/O control
+Scorpio:
+  output_yaml_files: ["output.yaml"]
+...

components/eamxx/tests/multi-process/physics_only/mam/mam4_srf_online_emiss_mam4_constituent_fluxes/output.yaml

@@ -0,0 +1,41 @@
+%YAML 1.1
+---
+filename_prefix: shoc_mam4_drydep_output
+Averaging Type: Instant
+Field Names:
+  - bc_a1
+  - bc_a3
+  - bc_a4
+  - dst_a1
+  - dst_a3
+  - so4_a1
+  - so4_a2
+  - so4_a3
+  - pom_a1
+  - pom_a3
+  - pom_a4
+  - soa_a1
+  - soa_a2
+  - soa_a3
+  - nacl_a1
+  - nacl_a2
+  - nacl_a3
+  - mom_a1
+  - mom_a2
+  - mom_a3
+  - mom_a4
+  - num_a1
+  - num_a2
+  - num_a3
+  - num_a4
+  - constituent_fluxes
+  - O3
+  - H2O2
+  - H2SO4
+  - SO2
+  - DMS
+  - SOAG
+output_control:
+  Frequency: ${NUM_STEPS}
+  frequency_units: nsteps
+...