fix ols ingest when directAncestors is not an array, add skos:exactMa…

…tch to identifier props
EBISPOT · Aug 12, 2024 · bf96829 · bf96829
1 parent 04d102a
commit bf96829
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/01_ingest/grebi_ingest_ols/src/main.rs b/01_ingest/grebi_ingest_ols/src/main.rs
@@ -214,8 +214,8 @@ fn read_entities(json: &mut JsonStreamReader<BufReader<StdinLock<'_>>>, output_n
         output_nodes.write_all(r#"","grebi:type":[""#.as_bytes()).unwrap();
         output_nodes.write_all(grebitype.as_bytes()).unwrap();
         if obj.contains_key("ols:directAncestor") {
-            for ancestor in obj.get("ols:directAncestor").unwrap().as_array().unwrap() {
-                if type_superclasses.contains(ancestor.as_str().unwrap()) {
+            for ancestor in get_string_values(obj.get("ols:directAncestor").unwrap()) { 
+                if type_superclasses.contains(ancestor) {
                     output_nodes.write_all(r#","#.as_bytes()).unwrap();
                     output_nodes.write_all(ancestor.to_string().as_bytes()).unwrap();
                 }

diff --git a/configs/subgraph_configs/ebi_full_monarch.json b/configs/subgraph_configs/ebi_full_monarch.json
@@ -16,7 +16,8 @@
         "obo:chebi/smiles",
         "impc:pmId",
         "impc:humanGeneAccId",
-        "monarch:iri"
+        "monarch:iri",
+        "skos:exactMatch"
     ],
     "additional_equivalence_groups": [
         ["grebi:name", "ols:label", "rdfs:label", "monarch:name", "impc:name", "reactome:displayName"],