Merge pull request #343 from EESSIbot/update-software-overview-173163…

…4980 update overview of available software
EESSI · Nov 15, 2024 · 660be34 · 660be34
2 parents ee1462f + 8b68c92
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diff --git a/docs/available_software/data/json_data.json b/docs/available_software/data/json_data.json
diff --git a/docs/available_software/data/json_data_detail.json b/docs/available_software/data/json_data_detail.json
diff --git a/docs/available_software/detail/Abseil.md b/docs/available_software/detail/Abseil.md
@@ -18,12 +18,13 @@ The overview below shows which Abseil installations are available per target arc
 To start using Abseil, load one of these modules using a `module load` command like:
 
 ```shell
-module load Abseil/20230125.3-GCCcore-12.3.0
+module load Abseil/20240116.1-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{ generated_time }})*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Abseil/20240116.1-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
 |Abseil/20230125.3-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
 |Abseil/20230125.2-GCCcore-12.2.0|x|x|x|x|x|x|-|x|x|
diff --git a/docs/available_software/detail/Arrow.md b/docs/available_software/detail/Arrow.md
@@ -18,17 +18,24 @@ The overview below shows which Arrow installations are available per target arch
 To start using Arrow, load one of these modules using a `module load` command like:
 
 ```shell
-module load Arrow/14.0.1-gfbf-2023a
+module load Arrow/16.1.0-gfbf-2023b
 ```
 
 *(This data was automatically generated on {{ generated_time }})*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Arrow/16.1.0-gfbf-2023b|x|x|x|x|x|x|x|x|x|
 |Arrow/14.0.1-gfbf-2023a|x|x|x|x|x|x|x|x|x|
 |Arrow/11.0.0-gfbf-2022b|x|x|x|x|x|x|-|x|x|
 
 
+### Arrow/16.1.0-gfbf-2023b
+
+This is a list of extensions included in the module:
+
+pyarrow-16.1.0
+
 ### Arrow/14.0.1-gfbf-2023a
 
 This is a list of extensions included in the module:

diff --git a/docs/available_software/detail/Mustache.md b/docs/available_software/detail/Mustache.md
@@ -0,0 +1,28 @@
+---
+hide:
+  - toc
+---
+
+Mustache
+========
+
+
+Mustache (Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps usingScale-Space Representation) is a tool for multi-scale detection of chromatin loops from Hi-C and Micro-Ccontact maps in high resolutions (10kbp all the way to 500bp and even more).Mustache uses recent technical advances in scale-space theory inComputer Vision to detect chromatin loops caused by interaction of DNA segments with a variable size.
+
+https://github.com/ay-lab/mustache
+# Available modules
+
+
+The overview below shows which Mustache installations are available per target architecture in EESSI, ordered based on software version (new to old).
+
+To start using Mustache, load one of these modules using a `module load` command like:
+
+```shell
+module load Mustache/1.3.3-foss-2023b
+```
+
+*(This data was automatically generated on {{ generated_time }})*  
+
+| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|Mustache/1.3.3-foss-2023b|x|x|x|x|x|x|x|x|x|
diff --git a/docs/available_software/detail/RE2.md b/docs/available_software/detail/RE2.md
@@ -18,12 +18,13 @@ The overview below shows which RE2 installations are available per target archit
 To start using RE2, load one of these modules using a `module load` command like:
 
 ```shell
-module load RE2/2023-08-01-GCCcore-12.3.0
+module load RE2/2024-03-01-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{ generated_time }})*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|RE2/2024-03-01-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
 |RE2/2023-08-01-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
 |RE2/2023-03-01-GCCcore-12.2.0|x|x|x|x|x|x|-|x|x|
diff --git a/docs/available_software/detail/RapidJSON.md b/docs/available_software/detail/RapidJSON.md
@@ -26,4 +26,5 @@ module load RapidJSON/1.1.0-GCCcore-12.2.0
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
 |RapidJSON/1.1.0-GCCcore-12.2.0|x|x|x|x|x|x|-|x|x|
+|RapidJSON/1.1.0-20240409-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
 |RapidJSON/1.1.0-20230928-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
diff --git a/docs/available_software/detail/cooler.md b/docs/available_software/detail/cooler.md
@@ -0,0 +1,35 @@
+---
+hide:
+  - toc
+---
+
+cooler
+======
+
+
+Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices.
+
+https://open2c.github.io/cooler
+# Available modules
+
+
+The overview below shows which cooler installations are available per target architecture in EESSI, ordered based on software version (new to old).
+
+To start using cooler, load one of these modules using a `module load` command like:
+
+```shell
+module load cooler/0.10.2-foss-2023b
+```
+
+*(This data was automatically generated on {{ generated_time }})*  
+
+| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|cooler/0.10.2-foss-2023b|x|x|x|x|x|x|x|x|x|
+
+
+### cooler/0.10.2-foss-2023b
+
+This is a list of extensions included in the module:
+
+asciitree-0.3.3, cooler-0.10.2, cytoolz-1.0.0, toolz-1.0.0
diff --git a/docs/available_software/detail/dill.md b/docs/available_software/detail/dill.md
@@ -18,11 +18,12 @@ The overview below shows which dill installations are available per target archi
 To start using dill, load one of these modules using a `module load` command like:
 
 ```shell
-module load dill/0.3.7-GCCcore-12.3.0
+module load dill/0.3.8-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{ generated_time }})*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|dill/0.3.8-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
 |dill/0.3.7-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
diff --git a/docs/available_software/detail/h5py.md b/docs/available_software/detail/h5py.md
@@ -18,12 +18,13 @@ The overview below shows which h5py installations are available per target archi
 To start using h5py, load one of these modules using a `module load` command like:
 
 ```shell
-module load h5py/3.9.0-foss-2023a
+module load h5py/3.11.0-foss-2023b
 ```
 
 *(This data was automatically generated on {{ generated_time }})*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|h5py/3.11.0-foss-2023b|x|x|x|x|x|x|x|x|x|
 |h5py/3.9.0-foss-2023a|x|x|x|x|x|x|x|x|x|
 |h5py/3.8.0-foss-2022b|x|x|x|x|x|x|-|x|x|
diff --git a/docs/available_software/detail/hic-straw.md b/docs/available_software/detail/hic-straw.md
@@ -0,0 +1,28 @@
+---
+hide:
+  - toc
+---
+
+hic-straw
+=========
+
+
+Straw is a library which allows rapid streaming of contact data from .hic files.
+
+https://github.com/aidenlab/straw
+# Available modules
+
+
+The overview below shows which hic-straw installations are available per target architecture in EESSI, ordered based on software version (new to old).
+
+To start using hic-straw, load one of these modules using a `module load` command like:
+
+```shell
+module load hic-straw/1.3.1-foss-2023b
+```
+
+*(This data was automatically generated on {{ generated_time }})*  
+
+| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|hic-straw/1.3.1-foss-2023b|x|x|x|x|x|x|x|x|x|
diff --git a/docs/available_software/detail/multiprocess.md b/docs/available_software/detail/multiprocess.md
@@ -0,0 +1,28 @@
+---
+hide:
+  - toc
+---
+
+multiprocess
+============
+
+
+better multiprocessing and multithreading in python
+
+https://github.com/uqfoundation/multiprocess
+# Available modules
+
+
+The overview below shows which multiprocess installations are available per target architecture in EESSI, ordered based on software version (new to old).
+
+To start using multiprocess, load one of these modules using a `module load` command like:
+
+```shell
+module load multiprocess/0.70.16-gfbf-2023b
+```
+
+*(This data was automatically generated on {{ generated_time }})*  
+
+| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
+| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|multiprocess/0.70.16-gfbf-2023b|x|x|x|x|x|x|x|x|x|
diff --git a/docs/available_software/detail/pyfaidx.md b/docs/available_software/detail/pyfaidx.md
@@ -18,13 +18,14 @@ The overview below shows which pyfaidx installations are available per target ar
 To start using pyfaidx, load one of these modules using a `module load` command like:
 
 ```shell
-module load pyfaidx/0.8.1.1-GCCcore-12.3.0
+module load pyfaidx/0.8.1.1-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{ generated_time }})*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|pyfaidx/0.8.1.1-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
 |pyfaidx/0.8.1.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
 |pyfaidx/0.7.2.1-GCCcore-12.2.0|x|x|x|x|x|x|-|x|x|
 

diff --git a/docs/available_software/detail/statsmodels.md b/docs/available_software/detail/statsmodels.md
@@ -18,16 +18,23 @@ The overview below shows which statsmodels installations are available per targe
 To start using statsmodels, load one of these modules using a `module load` command like:
 
 ```shell
-module load statsmodels/0.14.1-gfbf-2023a
+module load statsmodels/0.14.1-gfbf-2023b
 ```
 
 *(This data was automatically generated on {{ generated_time }})*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|statsmodels/0.14.1-gfbf-2023b|x|x|x|x|x|x|x|x|x|
 |statsmodels/0.14.1-gfbf-2023a|x|x|x|x|x|x|x|x|x|
 
 
+### statsmodels/0.14.1-gfbf-2023b
+
+This is a list of extensions included in the module:
+
+patsy-0.5.6, statsmodels-0.14.1
+
 ### statsmodels/0.14.1-gfbf-2023a
 
 This is a list of extensions included in the module:

diff --git a/docs/available_software/detail/utf8proc.md b/docs/available_software/detail/utf8proc.md
@@ -18,12 +18,13 @@ The overview below shows which utf8proc installations are available per target a
 To start using utf8proc, load one of these modules using a `module load` command like:
 
 ```shell
-module load utf8proc/2.8.0-GCCcore-12.3.0
+module load utf8proc/2.9.0-GCCcore-13.2.0
 ```
 
 *(This data was automatically generated on {{ generated_time }})*  
 
 | |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
 | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
+|utf8proc/2.9.0-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
 |utf8proc/2.8.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
 |utf8proc/2.8.0-GCCcore-12.2.0|x|x|x|x|x|x|-|x|x|
diff --git a/mkdocs.yml b/mkdocs.yml
@@ -132,7 +132,7 @@ extra:
     - icon: fontawesome/brands/twitter
       link: https://twitter.com/eessi_hpc
   # this gets auto-updated via update_generated_time.sh script run in update_available_software.yml action
-  generated_time: "Tue, 12 Nov 2024 at 01:27:51 UTC"
+  generated_time: "Fri, 15 Nov 2024 at 01:42:59 UTC"
 extra_javascript:
   # mermaid diagram
   - https://cdn.jsdelivr.net/npm/mermaid@10/dist/mermaid.esm.min.mjs