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update overview of available software #343

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update overview of available software #343

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2 changes: 1 addition & 1 deletion docs/available_software/data/json_data.json
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2 changes: 1 addition & 1 deletion docs/available_software/data/json_data_detail.json
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3 changes: 2 additions & 1 deletion docs/available_software/detail/Abseil.md
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Expand Up @@ -18,12 +18,13 @@ The overview below shows which Abseil installations are available per target arc
To start using Abseil, load one of these modules using a `module load` command like:

```shell
module load Abseil/20230125.3-GCCcore-12.3.0
module load Abseil/20240116.1-GCCcore-13.2.0
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Abseil/20240116.1-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
|Abseil/20230125.3-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
|Abseil/20230125.2-GCCcore-12.2.0|x|x|x|x|x|x|-|x|x|
9 changes: 8 additions & 1 deletion docs/available_software/detail/Arrow.md
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Expand Up @@ -18,17 +18,24 @@ The overview below shows which Arrow installations are available per target arch
To start using Arrow, load one of these modules using a `module load` command like:

```shell
module load Arrow/14.0.1-gfbf-2023a
module load Arrow/16.1.0-gfbf-2023b
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Arrow/16.1.0-gfbf-2023b|x|x|x|x|x|x|x|x|x|
|Arrow/14.0.1-gfbf-2023a|x|x|x|x|x|x|x|x|x|
|Arrow/11.0.0-gfbf-2022b|x|x|x|x|x|x|-|x|x|


### Arrow/16.1.0-gfbf-2023b

This is a list of extensions included in the module:

pyarrow-16.1.0

### Arrow/14.0.1-gfbf-2023a

This is a list of extensions included in the module:
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28 changes: 28 additions & 0 deletions docs/available_software/detail/Mustache.md
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---
hide:
- toc
---

Mustache
========


Mustache (Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps usingScale-Space Representation) is a tool for multi-scale detection of chromatin loops from Hi-C and Micro-Ccontact maps in high resolutions (10kbp all the way to 500bp and even more).Mustache uses recent technical advances in scale-space theory inComputer Vision to detect chromatin loops caused by interaction of DNA segments with a variable size.

https://github.com/ay-lab/mustache
# Available modules


The overview below shows which Mustache installations are available per target architecture in EESSI, ordered based on software version (new to old).

To start using Mustache, load one of these modules using a `module load` command like:

```shell
module load Mustache/1.3.3-foss-2023b
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|Mustache/1.3.3-foss-2023b|x|x|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion docs/available_software/detail/RE2.md
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Expand Up @@ -18,12 +18,13 @@ The overview below shows which RE2 installations are available per target archit
To start using RE2, load one of these modules using a `module load` command like:

```shell
module load RE2/2023-08-01-GCCcore-12.3.0
module load RE2/2024-03-01-GCCcore-13.2.0
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|RE2/2024-03-01-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
|RE2/2023-08-01-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
|RE2/2023-03-01-GCCcore-12.2.0|x|x|x|x|x|x|-|x|x|
1 change: 1 addition & 0 deletions docs/available_software/detail/RapidJSON.md
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Expand Up @@ -26,4 +26,5 @@ module load RapidJSON/1.1.0-GCCcore-12.2.0
| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|RapidJSON/1.1.0-GCCcore-12.2.0|x|x|x|x|x|x|-|x|x|
|RapidJSON/1.1.0-20240409-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
|RapidJSON/1.1.0-20230928-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
35 changes: 35 additions & 0 deletions docs/available_software/detail/cooler.md
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---

cooler
======


Cooler is a support library for a storage format, also called cooler, used to store genomic interaction data of any size, such as Hi-C contact matrices.

https://open2c.github.io/cooler
# Available modules


The overview below shows which cooler installations are available per target architecture in EESSI, ordered based on software version (new to old).

To start using cooler, load one of these modules using a `module load` command like:

```shell
module load cooler/0.10.2-foss-2023b
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|cooler/0.10.2-foss-2023b|x|x|x|x|x|x|x|x|x|


### cooler/0.10.2-foss-2023b

This is a list of extensions included in the module:

asciitree-0.3.3, cooler-0.10.2, cytoolz-1.0.0, toolz-1.0.0
3 changes: 2 additions & 1 deletion docs/available_software/detail/dill.md
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Expand Up @@ -18,11 +18,12 @@ The overview below shows which dill installations are available per target archi
To start using dill, load one of these modules using a `module load` command like:

```shell
module load dill/0.3.7-GCCcore-12.3.0
module load dill/0.3.8-GCCcore-13.2.0
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|dill/0.3.8-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
|dill/0.3.7-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion docs/available_software/detail/h5py.md
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Expand Up @@ -18,12 +18,13 @@ The overview below shows which h5py installations are available per target archi
To start using h5py, load one of these modules using a `module load` command like:

```shell
module load h5py/3.9.0-foss-2023a
module load h5py/3.11.0-foss-2023b
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|h5py/3.11.0-foss-2023b|x|x|x|x|x|x|x|x|x|
|h5py/3.9.0-foss-2023a|x|x|x|x|x|x|x|x|x|
|h5py/3.8.0-foss-2022b|x|x|x|x|x|x|-|x|x|
28 changes: 28 additions & 0 deletions docs/available_software/detail/hic-straw.md
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hic-straw
=========


Straw is a library which allows rapid streaming of contact data from .hic files.

https://github.com/aidenlab/straw
# Available modules


The overview below shows which hic-straw installations are available per target architecture in EESSI, ordered based on software version (new to old).

To start using hic-straw, load one of these modules using a `module load` command like:

```shell
module load hic-straw/1.3.1-foss-2023b
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|hic-straw/1.3.1-foss-2023b|x|x|x|x|x|x|x|x|x|
28 changes: 28 additions & 0 deletions docs/available_software/detail/multiprocess.md
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---

multiprocess
============


better multiprocessing and multithreading in python

https://github.com/uqfoundation/multiprocess
# Available modules


The overview below shows which multiprocess installations are available per target architecture in EESSI, ordered based on software version (new to old).

To start using multiprocess, load one of these modules using a `module load` command like:

```shell
module load multiprocess/0.70.16-gfbf-2023b
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|multiprocess/0.70.16-gfbf-2023b|x|x|x|x|x|x|x|x|x|
3 changes: 2 additions & 1 deletion docs/available_software/detail/pyfaidx.md
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Expand Up @@ -18,13 +18,14 @@ The overview below shows which pyfaidx installations are available per target ar
To start using pyfaidx, load one of these modules using a `module load` command like:

```shell
module load pyfaidx/0.8.1.1-GCCcore-12.3.0
module load pyfaidx/0.8.1.1-GCCcore-13.2.0
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|pyfaidx/0.8.1.1-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
|pyfaidx/0.8.1.1-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
|pyfaidx/0.7.2.1-GCCcore-12.2.0|x|x|x|x|x|x|-|x|x|

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9 changes: 8 additions & 1 deletion docs/available_software/detail/statsmodels.md
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Expand Up @@ -18,16 +18,23 @@ The overview below shows which statsmodels installations are available per targe
To start using statsmodels, load one of these modules using a `module load` command like:

```shell
module load statsmodels/0.14.1-gfbf-2023a
module load statsmodels/0.14.1-gfbf-2023b
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|statsmodels/0.14.1-gfbf-2023b|x|x|x|x|x|x|x|x|x|
|statsmodels/0.14.1-gfbf-2023a|x|x|x|x|x|x|x|x|x|


### statsmodels/0.14.1-gfbf-2023b

This is a list of extensions included in the module:

patsy-0.5.6, statsmodels-0.14.1

### statsmodels/0.14.1-gfbf-2023a

This is a list of extensions included in the module:
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3 changes: 2 additions & 1 deletion docs/available_software/detail/utf8proc.md
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Expand Up @@ -18,12 +18,13 @@ The overview below shows which utf8proc installations are available per target a
To start using utf8proc, load one of these modules using a `module load` command like:

```shell
module load utf8proc/2.8.0-GCCcore-12.3.0
module load utf8proc/2.9.0-GCCcore-13.2.0
```

*(This data was automatically generated on {{ generated_time }})*

| |aarch64/generic|aarch64/neoverse_n1|aarch64/neoverse_v1|x86_64/generic|x86_64/amd/zen2|x86_64/amd/zen3|x86_64/amd/zen4|x86_64/intel/haswell|x86_64/intel/skylake_avx512|
| :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: | :---: |
|utf8proc/2.9.0-GCCcore-13.2.0|x|x|x|x|x|x|x|x|x|
|utf8proc/2.8.0-GCCcore-12.3.0|x|x|x|x|x|x|x|x|x|
|utf8proc/2.8.0-GCCcore-12.2.0|x|x|x|x|x|x|-|x|x|
2 changes: 1 addition & 1 deletion mkdocs.yml
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Expand Up @@ -132,7 +132,7 @@ extra:
- icon: fontawesome/brands/twitter
link: https://twitter.com/eessi_hpc
# this gets auto-updated via update_generated_time.sh script run in update_available_software.yml action
generated_time: "Tue, 12 Nov 2024 at 01:27:51 UTC"
generated_time: "Fri, 15 Nov 2024 at 01:42:59 UTC"
extra_javascript:
# mermaid diagram
- https://cdn.jsdelivr.net/npm/mermaid@10/dist/mermaid.esm.min.mjs
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