adding GROMACS 2021.5 with foss/2021b to EESSI pilot 2023.06

[xinan1911]

No description provided.

[eessi-bot]

Instance eessi-bot-citc-aws is configured to build:

• arch x86_64/generic for repo eessi-2021.12
• arch x86_64/generic for repo eessi-2023.06-compat
• arch x86_64/generic for repo eessi-2023.06-software
• arch x86_64/intel/haswell for repo eessi-2021.12
• arch x86_64/intel/haswell for repo eessi-2023.06-compat
• arch x86_64/intel/haswell for repo eessi-2023.06-software
• arch x86_64/intel/skylake_avx512 for repo eessi-2021.12
• arch x86_64/intel/skylake_avx512 for repo eessi-2023.06-compat
• arch x86_64/intel/skylake_avx512 for repo eessi-2023.06-software
• arch x86_64/amd/zen2 for repo eessi-2021.12
• arch x86_64/amd/zen2 for repo eessi-2023.06-compat
• arch x86_64/amd/zen2 for repo eessi-2023.06-software
• arch x86_64/amd/zen3 for repo eessi-2021.12
• arch x86_64/amd/zen3 for repo eessi-2023.06-compat
• arch x86_64/amd/zen3 for repo eessi-2023.06-software
• arch aarch64/generic for repo eessi-2021.12
• arch aarch64/generic for repo eessi-2023.06-compat
• arch aarch64/generic for repo eessi-2023.06-software
• arch aarch64/neoverse_n1 for repo eessi-2021.12
• arch aarch64/neoverse_n1 for repo eessi-2023.06-compat
• arch aarch64/neoverse_n1 for repo eessi-2023.06-software
• arch aarch64/neoverse_v1 for repo eessi-2021.12
• arch aarch64/neoverse_v1 for repo eessi-2023.06-compat
• arch aarch64/neoverse_v1 for repo eessi-2023.06-software

[xinan1911]

bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen2

[eessi-bot]

Updates by the bot instance eessi-bot-citc-aws (click for details)

• received bot command build repo:eessi-2023.06-software arch:x86_64/amd/zen2 from xinan1911

  • expanded format: build repository:eessi-2023.06-software architecture:x86_64/amd/zen2

• handling command build repository:eessi-2023.06-software architecture:x86_64/amd/zen2 resulted in:

  • submitted job 6188, for details & status see adding GROMACS 2021.5 with foss/2021b to EESSI pilot 2023.06 #313 (comment)

[eessi-bot]

New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen2 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.07/pr_313/6188

date	job status	comment
Jul 31 15:11:14 UTC 2023	submitted	job id 6188 awaits release by job manager
Jul 31 15:11:51 UTC 2023	released	job awaits launch by Slurm scheduler
Jul 31 15:15:59 UTC 2023	running	job 6188 is running
Jul 31 16:38:00 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-6188.out ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.gz created! Artefacts eessi-2023.06-software-linux-x86_64-amd-zen2-1690821387.tar.gz size: 168 MiB (176452689 bytes) entries: 14622 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all Eigen/3.3.9-GCCcore-11.2.0.lua GROMACS/2021.5-foss-2021b.lua hypothesis/6.14.6-GCCcore-11.2.0.lua networkx/2.6.3-foss-2021b.lua pybind11/2.7.1-GCCcore-11.2.0.lua scikit-build/0.11.1-GCCcore-11.2.0.lua SciPy-bundle/2021.10-foss-2021b.lua software under 2023.06/software/linux/x86_64/amd/zen2/software Eigen/3.3.9-GCCcore-11.2.0 GROMACS/2021.5-foss-2021b hypothesis/6.14.6-GCCcore-11.2.0 networkx/2.6.3-foss-2021b pybind11/2.7.1-GCCcore-11.2.0 scikit-build/0.11.1-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b other under 2023.06/software/linux/x86_64/amd/zen2 .lmod/cache/spiderT.lua .lmod/cache/spiderT.luac_5.1 .lmod/cache/timestamp

[xinan1911]

bot: build repo:eessi-2023.06-software arch:aarch64-neoverse_v1

[eessi-bot]

Updates by the bot instance eessi-bot-citc-aws (click for details)

• received bot command build repo:eessi-2023.06-software arch:aarch64-neoverse_v1 from xinan1911

  • expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1

• handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

  • submitted job 6189, for details & status see adding GROMACS 2021.5 with foss/2021b to EESSI pilot 2023.06 #313 (comment)

[eessi-bot]

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.08/pr_313/6189

date	job status	comment
Aug 01 07:25:35 UTC 2023	submitted	job id 6189 awaits release by job manager
Aug 01 07:26:13 UTC 2023	released	job awaits launch by Slurm scheduler
Aug 01 07:30:22 UTC 2023	running	job 6189 is running
Aug 01 07:47:58 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file slurm-6189.out ❌ found message matching ERROR: ❌ found message matching FAILED: ❌ found message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.gz created! Artefacts eessi-2023.06-software-linux-aarch64-neoverse_v1-1690876006.tar.gz size: 2 MiB (2717893 bytes) entries: 1083 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all Eigen/3.3.9-GCCcore-11.2.0.lua hypothesis/6.14.6-GCCcore-11.2.0.lua pybind11/2.7.1-GCCcore-11.2.0.lua scikit-build/0.11.1-GCCcore-11.2.0.lua software under 2023.06/software/linux/aarch64/neoverse_v1/software Eigen/3.3.9-GCCcore-11.2.0 hypothesis/6.14.6-GCCcore-11.2.0 pybind11/2.7.1-GCCcore-11.2.0 scikit-build/0.11.1-GCCcore-11.2.0 other under 2023.06/software/linux/aarch64/neoverse_v1 .lmod/cache/spiderT.lua .lmod/cache/spiderT.luac_5.1 .lmod/cache/timestamp

[xinan1911]

There is a previous try in #304.
I have reproduced the error in aarch64-neoverse_v1. I will close this pr and please refer to the pr above.