{2023.06}[foss/2022a] TensorFlow 2.11.0 #346

boegel · 2023-09-29T14:42:12Z

31 out of 70 required modules missing:

* Zip/3.0-GCCcore-11.3.0 (Zip-3.0-GCCcore-11.3.0.eb)
* Eigen/3.4.0-GCCcore-11.3.0 (Eigen-3.4.0-GCCcore-11.3.0.eb)
* protobuf/3.19.4-GCCcore-11.3.0 (protobuf-3.19.4-GCCcore-11.3.0.eb)
* double-conversion/3.2.0-GCCcore-11.3.0 (double-conversion-3.2.0-GCCcore-11.3.0.eb)
* GMP/6.2.1-GCCcore-11.3.0 (GMP-6.2.1-GCCcore-11.3.0.eb)
* Rust/1.60.0-GCCcore-11.3.0 (Rust-1.60.0-GCCcore-11.3.0.eb)
* git/2.36.0-GCCcore-11.3.0-nodocs (git-2.36.0-GCCcore-11.3.0-nodocs.eb)
* Python/3.10.4-GCCcore-11.3.0 (Python-3.10.4-GCCcore-11.3.0.eb)
* pybind11/2.9.2-GCCcore-11.3.0 (pybind11-2.9.2-GCCcore-11.3.0.eb)
* dill/0.3.6-GCCcore-11.3.0 (dill-0.3.6-GCCcore-11.3.0.eb)
* pkgconfig/1.5.5-GCCcore-11.3.0-python (pkgconfig-1.5.5-GCCcore-11.3.0-python.eb)
* hypothesis/6.46.7-GCCcore-11.3.0 (hypothesis-6.46.7-GCCcore-11.3.0.eb)
* Bazel/5.1.1-GCCcore-11.3.0 (Bazel-5.1.1-GCCcore-11.3.0.eb)
* giflib/5.2.1-GCCcore-11.3.0 (giflib-5.2.1-GCCcore-11.3.0.eb)
* Ninja/1.10.2-GCCcore-11.3.0 (Ninja-1.10.2-GCCcore-11.3.0.eb)
* Szip/2.1.1-GCCcore-11.3.0 (Szip-2.1.1-GCCcore-11.3.0.eb)
* flatbuffers/2.0.7-GCCcore-11.3.0 (flatbuffers-2.0.7-GCCcore-11.3.0.eb)
* ICU/71.1-GCCcore-11.3.0 (ICU-71.1-GCCcore-11.3.0.eb)
* JsonCpp/1.9.5-GCCcore-11.3.0 (JsonCpp-1.9.5-GCCcore-11.3.0.eb)
* LMDB/0.9.29-GCCcore-11.3.0 (LMDB-0.9.29-GCCcore-11.3.0.eb)
* NASM/2.15.05-GCCcore-11.3.0 (NASM-2.15.05-GCCcore-11.3.0.eb)
* libjpeg-turbo/2.1.3-GCCcore-11.3.0 (libjpeg-turbo-2.1.3-GCCcore-11.3.0.eb)
* nsync/1.25.0-GCCcore-11.3.0 (nsync-1.25.0-GCCcore-11.3.0.eb)
* protobuf-python/3.19.4-GCCcore-11.3.0 (protobuf-python-3.19.4-GCCcore-11.3.0.eb)
* HDF5/1.12.2-gompi-2022a (HDF5-1.12.2-gompi-2022a.eb)
* SciPy-bundle/2022.05-foss-2022a (SciPy-bundle-2022.05-foss-2022a.eb)
* h5py/3.7.0-foss-2022a (h5py-3.7.0-foss-2022a.eb)
* libpng/1.6.37-GCCcore-11.3.0 (libpng-1.6.37-GCCcore-11.3.0.eb)
* snappy/1.1.9-GCCcore-11.3.0 (snappy-1.1.9-GCCcore-11.3.0.eb)
* networkx/2.8.4-foss-2022a (networkx-2.8.4-foss-2022a.eb)
* TensorFlow/2.11.0-foss-2022a (TensorFlow-2.11.0-foss-2022a.eb)

eessi-bot · 2023-09-29T14:42:15Z

Instance eessi-bot-citc-aws is configured to build:

arch x86_64/generic for repo eessi-2021.12
arch x86_64/generic for repo eessi.org-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi-2023.06-software
arch x86_64/intel/haswell for repo eessi-2021.12
arch x86_64/intel/haswell for repo eessi.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-2021.12
arch x86_64/intel/skylake_avx512 for repo eessi.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-2023.06-software
arch x86_64/amd/zen2 for repo eessi-2021.12
arch x86_64/amd/zen2 for repo eessi.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-2023.06-software
arch x86_64/amd/zen3 for repo eessi-2021.12
arch x86_64/amd/zen3 for repo eessi.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-2023.06-software
arch aarch64/generic for repo eessi-2021.12
arch aarch64/generic for repo eessi.org-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-2021.12
arch aarch64/neoverse_n1 for repo eessi.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-2021.12
arch aarch64/neoverse_v1 for repo eessi.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-2023.06-software

boegel · 2023-09-29T14:42:26Z

bot: build repo:eessi-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2023-09-29T14:42:28Z

Updates by the bot instance eessi-bot-citc-aws (click for details)

received bot command build repo:eessi-2023.06-software arch:aarch64/neoverse_v1 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 7613, for details & status see {2023.06}[foss/2022a] TensorFlow 2.11.0 #346 (comment)

eessi-bot · 2023-09-29T14:42:35Z

New job on instance eessi-bot-citc-aws for architecture aarch64-neoverse_v1 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_346/7613

date	job status	comment
Sep 29 14:42:34 UTC 2023	submitted	job id `7613` awaits release by job manager
Sep 29 14:42:40 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 29 14:56:12 UTC 2023	running	job `7613` is running
Sep 29 17:34:43 UTC 2023	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7613.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1696008619.tar.gz` size: 573 MiB (601190126 bytes) entries: 75347 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `Bazel/5.1.1-GCCcore-11.3.0.lua` `dill/0.3.6-GCCcore-11.3.0.lua` `double-conversion/3.2.0-GCCcore-11.3.0.lua` `Eigen/3.4.0-GCCcore-11.3.0.lua` `flatbuffers/2.0.7-GCCcore-11.3.0.lua` `giflib/5.2.1-GCCcore-11.3.0.lua` `git/2.36.0-GCCcore-11.3.0-nodocs.lua` `GMP/6.2.1-GCCcore-11.3.0.lua` `h5py/3.7.0-foss-2022a.lua` `HDF5/1.12.2-gompi-2022a.lua` `hypothesis/6.46.7-GCCcore-11.3.0.lua` `ICU/71.1-GCCcore-11.3.0.lua` `JsonCpp/1.9.5-GCCcore-11.3.0.lua` `libjpeg-turbo/2.1.3-GCCcore-11.3.0.lua` `libpng/1.6.37-GCCcore-11.3.0.lua` `LMDB/0.9.29-GCCcore-11.3.0.lua` `NASM/2.15.05-GCCcore-11.3.0.lua` `networkx/2.8.4-foss-2022a.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `nsync/1.25.0-GCCcore-11.3.0.lua` `pkgconfig/1.5.5-GCCcore-11.3.0-python.lua` `protobuf/3.19.4-GCCcore-11.3.0.lua` `protobuf-python/3.19.4-GCCcore-11.3.0.lua` `pybind11/2.9.2-GCCcore-11.3.0.lua` `Python/3.10.4-GCCcore-11.3.0.lua` `Rust/1.60.0-GCCcore-11.3.0.lua` `SciPy-bundle/2022.05-foss-2022a.lua` `snappy/1.1.9-GCCcore-11.3.0.lua` `Szip/2.1.1-GCCcore-11.3.0.lua` `Zip/3.0-GCCcore-11.3.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `Bazel/5.1.1-GCCcore-11.3.0` `dill/0.3.6-GCCcore-11.3.0` `double-conversion/3.2.0-GCCcore-11.3.0` `Eigen/3.4.0-GCCcore-11.3.0` `flatbuffers/2.0.7-GCCcore-11.3.0` `giflib/5.2.1-GCCcore-11.3.0` `git/2.36.0-GCCcore-11.3.0-nodocs` `GMP/6.2.1-GCCcore-11.3.0` `h5py/3.7.0-foss-2022a` `HDF5/1.12.2-gompi-2022a` `hypothesis/6.46.7-GCCcore-11.3.0` `ICU/71.1-GCCcore-11.3.0` `JsonCpp/1.9.5-GCCcore-11.3.0` `libjpeg-turbo/2.1.3-GCCcore-11.3.0` `libpng/1.6.37-GCCcore-11.3.0` `LMDB/0.9.29-GCCcore-11.3.0` `NASM/2.15.05-GCCcore-11.3.0` `networkx/2.8.4-foss-2022a` `Ninja/1.10.2-GCCcore-11.3.0` `nsync/1.25.0-GCCcore-11.3.0` `pkgconfig/1.5.5-GCCcore-11.3.0-python` `protobuf/3.19.4-GCCcore-11.3.0` `protobuf-python/3.19.4-GCCcore-11.3.0` `pybind11/2.9.2-GCCcore-11.3.0` `Python/3.10.4-GCCcore-11.3.0` `Rust/1.60.0-GCCcore-11.3.0` `SciPy-bundle/2022.05-foss-2022a` `snappy/1.1.9-GCCcore-11.3.0` `Szip/2.1.1-GCCcore-11.3.0` `Zip/3.0-GCCcore-11.3.0` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

boegel · 2023-09-30T08:02:19Z

Same problem as in #343 :

/tmp/eb-esitnstn/eb-vmjuzsmj/eb-eoggyst1/eb-1a_l2ddk/tmpag2kz9yq/rpath_wrappers/gcc_wrapper/gcc -U_FORTIFY_SOURCE -fstack-protector -Wall -Wunused-but-set-parameter -Wno-free-nonheap-object -fno-omit-frame-pointer -g0 -O2 '-D_FORTIFY_SOURCE=1' -DNDEBUG -ffunction-sections -fdata-sections -MD -MF bazel-out/aarch64-opt/bin/external/XNNPACK/_objs/asm_microkernels/3/4x16c4-minmax-rndnu-aarch64-neondot-ld128.pic.d -fPIC -iquote external/XNNPACK -iquote bazel-out/aarch64-opt/bin/external/XNNPACK -isystem external/XNNPACK/include -isystem bazel-out/aarch64-opt/bin/external/XNNPACK/include -isystem external/XNNPACK/src -isystem bazel-out/aarch64-opt/bin/external/XNNPACK/src -Wno-all -Wno-extra -Wno-deprecated -Wno-deprecated-declarations -Wno-ignored-attributes -Wno-unknown-warning -Wno-array-parameter -Wno-stringop-overflow -Wno-array-bounds -Wunused-result '-Werror=unused-result' -DAUTOLOAD_DYNAMIC_KERNELS -O2 -ftree-vectorize '-mcpu=native' -fno-math-errno -fPIC -fPIC -Iinclude -Isrc '-march=armv8.2-a+fp16+dotprod' -O2 -fno-canonical-system-headers -Wno-builtin-macro-redefined '-D__DATE__="redacted"' '-D__TIMESTAMP__="redacted"' '-D__TIME__="redacted"' -c external/XNNPACK/src/qu8-igemm/gen/4x16c4-minmax-rndnu-aarch64-neondot-ld128.S -o bazel-out/aarch64-opt/bin/external/XNNPACK/_objs/asm_microkernels/3/4x16c4-minmax-rndnu-aarch64-neondot-ld128.pic.o)
# Configuration: a224c8afb49181e93a8e149806f65517774524036a5f02c72227e226f6d6f67c
# Execution platform: @local_execution_config_platform//:platform
cc1: warning: switch '-mcpu=zeus+crypto+sha3+sm4+nodotprod+noprofile+nopauth' conflicts with '-march=armv8.2-a+fp16+dotprod' switch
cc1: note: unrecognized command-line option '-Wno-unknown-warning' may have been intended to silence earlier diagnostics
external/XNNPACK/src/qu8-igemm/gen/4x16c4-minmax-rndnu-aarch64-neondot-ld128.S: Assembler messages:
external/XNNPACK/src/qu8-igemm/gen/4x16c4-minmax-rndnu-aarch64-neondot-ld128.S:123: Error: selected processor does not support `udot v12.4s,v8.16b,v0.16b'

boegel · 2023-09-30T08:14:08Z

There are also 18 failing tests (out of 35441) for scipy 1.8.1, but the test command is still existing with zero exit code...

FAILED optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139 - A...
FAILED optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139
FAILED optimize/tests/test_optimize.py::test_equal_bounds[None-constraints3-<lambda>-kwds0-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[None-constraints3-Bounds-kwds0-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[None-constraints5-<lambda>-kwds0-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[None-constraints5-<lambda>-kwds1-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[None-constraints5-<lambda>-kwds2-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[None-constraints5-Bounds-kwds0-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[None-constraints5-Bounds-kwds1-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[None-constraints5-Bounds-kwds2-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[callback-constraints3-<lambda>-kwds0-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[callback-constraints3-Bounds-kwds0-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[callback-constraints5-<lambda>-kwds0-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[callback-constraints5-<lambda>-kwds1-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[callback-constraints5-<lambda>-kwds2-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[callback-constraints5-Bounds-kwds0-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[callback-constraints5-Bounds-kwds1-SLSQP]
FAILED optimize/tests/test_optimize.py::test_equal_bounds[callback-constraints5-Bounds-kwds2-SLSQP]
= 18 failed, 35441 passed, 2756 skipped, 11452 deselected, 104 xfailed, 11 xpassed, 34 warnings in 391.16s (0:06:31) =

boegel · 2023-09-30T08:20:42Z

bot: build repo:eessi-2023.06-software arch:x86_64/amd/zen2

eessi-bot · 2023-09-30T08:20:45Z

Updates by the bot instance eessi-bot-citc-aws (click for details)

received bot command build repo:eessi-2023.06-software arch:x86_64/amd/zen2 from boegel
- expanded format: build repository:eessi-2023.06-software architecture:x86_64/amd/zen2
handling command build repository:eessi-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 7617, for details & status see {2023.06}[foss/2022a] TensorFlow 2.11.0 #346 (comment)

eessi-bot · 2023-09-30T08:20:52Z

New job on instance eessi-bot-citc-aws for architecture x86_64-amd-zen2 for repository eessi-2023.06-software in job dir /mnt/shared/home/bot/eessi-bot-software-layer/jobs/2023.09/pr_346/7617

date	job status	comment
Sep 30 08:20:51 UTC 2023	submitted	job id `7617` awaits release by job manager
Sep 30 08:21:54 UTC 2023	released	job awaits launch by Slurm scheduler
Sep 30 08:25:58 UTC 2023	running	job `7617` is running
Sep 30 17:41:41 UTC 2023	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7617.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1696095508.tar.gz` size: 866 MiB (908878123 bytes) entries: 95125 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `Bazel/5.1.1-GCCcore-11.3.0.lua` `dill/0.3.6-GCCcore-11.3.0.lua` `double-conversion/3.2.0-GCCcore-11.3.0.lua` `Eigen/3.4.0-GCCcore-11.3.0.lua` `flatbuffers/2.0.7-GCCcore-11.3.0.lua` `giflib/5.2.1-GCCcore-11.3.0.lua` `git/2.36.0-GCCcore-11.3.0-nodocs.lua` `GMP/6.2.1-GCCcore-11.3.0.lua` `h5py/3.7.0-foss-2022a.lua` `HDF5/1.12.2-gompi-2022a.lua` `hypothesis/6.46.7-GCCcore-11.3.0.lua` `ICU/71.1-GCCcore-11.3.0.lua` `JsonCpp/1.9.5-GCCcore-11.3.0.lua` `libjpeg-turbo/2.1.3-GCCcore-11.3.0.lua` `libpng/1.6.37-GCCcore-11.3.0.lua` `LMDB/0.9.29-GCCcore-11.3.0.lua` `NASM/2.15.05-GCCcore-11.3.0.lua` `networkx/2.8.4-foss-2022a.lua` `Ninja/1.10.2-GCCcore-11.3.0.lua` `nsync/1.25.0-GCCcore-11.3.0.lua` `pkgconfig/1.5.5-GCCcore-11.3.0-python.lua` `protobuf/3.19.4-GCCcore-11.3.0.lua` `protobuf-python/3.19.4-GCCcore-11.3.0.lua` `pybind11/2.9.2-GCCcore-11.3.0.lua` `Python/3.10.4-GCCcore-11.3.0.lua` `Rust/1.60.0-GCCcore-11.3.0.lua` `SciPy-bundle/2022.05-foss-2022a.lua` `snappy/1.1.9-GCCcore-11.3.0.lua` `Szip/2.1.1-GCCcore-11.3.0.lua` `TensorFlow/2.11.0-foss-2022a.lua` `Zip/3.0-GCCcore-11.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `Bazel/5.1.1-GCCcore-11.3.0` `dill/0.3.6-GCCcore-11.3.0` `double-conversion/3.2.0-GCCcore-11.3.0` `Eigen/3.4.0-GCCcore-11.3.0` `flatbuffers/2.0.7-GCCcore-11.3.0` `giflib/5.2.1-GCCcore-11.3.0` `git/2.36.0-GCCcore-11.3.0-nodocs` `GMP/6.2.1-GCCcore-11.3.0` `h5py/3.7.0-foss-2022a` `HDF5/1.12.2-gompi-2022a` `hypothesis/6.46.7-GCCcore-11.3.0` `ICU/71.1-GCCcore-11.3.0` `JsonCpp/1.9.5-GCCcore-11.3.0` `libjpeg-turbo/2.1.3-GCCcore-11.3.0` `libpng/1.6.37-GCCcore-11.3.0` `LMDB/0.9.29-GCCcore-11.3.0` `NASM/2.15.05-GCCcore-11.3.0` `networkx/2.8.4-foss-2022a` `Ninja/1.10.2-GCCcore-11.3.0` `nsync/1.25.0-GCCcore-11.3.0` `pkgconfig/1.5.5-GCCcore-11.3.0-python` `protobuf/3.19.4-GCCcore-11.3.0` `protobuf-python/3.19.4-GCCcore-11.3.0` `pybind11/2.9.2-GCCcore-11.3.0` `Python/3.10.4-GCCcore-11.3.0` `Rust/1.60.0-GCCcore-11.3.0` `SciPy-bundle/2022.05-foss-2022a` `snappy/1.1.9-GCCcore-11.3.0` `Szip/2.1.1-GCCcore-11.3.0` `TensorFlow/2.11.0-foss-2022a` `Zip/3.0-GCCcore-11.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`

boegel · 2023-10-02T06:44:12Z

I've opened a dedicated issue in the EasyBuild repo for the problem on aarch64/*, since this is in no way specific to EESSI: easybuilders/easybuild-easyconfigs#18899

bedroge · 2024-04-16T07:16:27Z

Closing this PR, because it's targeting the now unsupported pilot repository.

…WARE_SUBDIR_OVERRIDE make sure that software directory that corresponds to $EESSI_SOFTWARE_SUBDIR_OVERRIDE exists

{2023.06}[foss/2022a] TensorFlow 2.11.0

b646b7f

boegel added the pilot-2023.06 label Sep 29, 2023

boegel mentioned this pull request Sep 29, 2023

{2023.06}[foss/2021b] TensorFlow 2.8.4 #343

Closed

boegel mentioned this pull request Sep 30, 2023

numpy/scipy test suite failures on aarch64/neoverse_v1 (SciPy-bundle) #318

Open

boegel mentioned this pull request Oct 1, 2023

failing build of recent TensorFlow easyconfigs on AWS Graviton3 (aarch64/neoverse_v1) easybuilders/easybuild-easyconfigs#18899

Closed

boegel changed the base branch from 2023.06 to pilot.eessi-hpc.org-2023.06 November 21, 2023 21:19

bedroge closed this Apr 16, 2024

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{2023.06}[foss/2022a] TensorFlow 2.11.0 #346

{2023.06}[foss/2022a] TensorFlow 2.11.0 #346

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boegel commented Oct 2, 2023

bedroge commented Apr 16, 2024

{2023.06}[foss/2022a] TensorFlow 2.11.0 #346

{2023.06}[foss/2022a] TensorFlow 2.11.0 #346

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