Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

[WIP] Add hillslope scripts (to python/ctsm/) and external, plus docs #2425

Draft
wants to merge 181 commits into
base: b4b-dev
Choose a base branch
from
Draft

[WIP] Add hillslope scripts (to python/ctsm/) and external, plus docs #2425

wants to merge 181 commits into from

Commits on Mar 15, 2024

  1. Add representative-hillslopes external (optional) in tools/external/.

    @samsrabin
    samsrabin committed Mar 15, 2024
    Configuration menu
    Copy the full SHA
    af111d1 View commit details
    Browse the repository at this point in the history

  2. UNTESTED! Bring in CTSM-specific hillslope Python scripts.

    @samsrabin
    samsrabin committed Mar 15, 2024
    Configuration menu
    Copy the full SHA
    f00c21c View commit details
    Browse the repository at this point in the history

Commits on Mar 18, 2024

  1. synthetic_hillslope: Remove unused bits.

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    697559b View commit details
    Browse the repository at this point in the history

  2. synthetic_hillslope: Add basic input arguments. 

    * -i/--input-file
* -o/--output-file
* --overwrite
    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    e6e3b38 View commit details
    Browse the repository at this point in the history

  3. synthetic_hillslope: Save settings as netCDF attributes.

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    8c9024c View commit details
    Browse the repository at this point in the history

  4. synthetic_hillslope: Change hard-coded settings to command-line options.

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    f662e56 View commit details
    Browse the repository at this point in the history

  5. synthetic_hillslope: Remove check_file_permissions().

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    bc9ed36 View commit details
    Browse the repository at this point in the history

  6. synthetic_hillslope: Remove unused code re: timetag.

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    5d54aeb View commit details
    Browse the repository at this point in the history

  7. synthetic_hillslope: Use shutil.copyfile() instead of subprocess.

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    a7515e0 View commit details
    Browse the repository at this point in the history

  8. synthetic_hillslope: Format with black.

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    f05fcbc View commit details
    Browse the repository at this point in the history

  9. Add previous commit to .git-blame-ignore-revs.

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    66e6045 View commit details
    Browse the repository at this point in the history

  10. synthetic_hillslope: Factor out create_variables(), write_to_file().

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    86aa9a3 View commit details
    Browse the repository at this point in the history

  11. synthetic_hillslope: Rename f and w to infile and outfile.

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    60b71b0 View commit details
    Browse the repository at this point in the history

  12. synthetic_hillslope: Add docstrings.

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    e021680 View commit details
    Browse the repository at this point in the history

  13. Simplify calculation of aspect.

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    d4b1bcb View commit details
    Browse the repository at this point in the history

  14. synthetic_hillslope: Reduce nesting in i-j loop.

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    92e655f View commit details
    Browse the repository at this point in the history

  15. synthetic_hillslope: Define *cosp_height() functions outside main().

    @samsrabin
    samsrabin committed Mar 18, 2024
    Configuration menu
    Copy the full SHA
    e28e757 View commit details
    Browse the repository at this point in the history

Commits on Mar 19, 2024

  1. synthetic_hillslope: Don't check hcase is slope_aspect; that's handle… 

    …d by parser.
    @samsrabin
    samsrabin committed Mar 19, 2024
    Configuration menu
    Copy the full SHA
    4a7377c View commit details
    Browse the repository at this point in the history

  2. synthetic_hillslope: More refactoring to reduce size of main().

    @samsrabin
    samsrabin committed Mar 19, 2024
    Configuration menu
    Copy the full SHA
    d87ab72 View commit details
    Browse the repository at this point in the history

  3. synthetic_hillslope: Resolve pylint complaint about netCDF4.Dataset().

    @samsrabin
    samsrabin committed Mar 19, 2024
    Configuration menu
    Copy the full SHA
    cc47ddd View commit details
    Browse the repository at this point in the history

  4. synthetic_hillslope: Actually close outfile.

    @samsrabin
    samsrabin committed Mar 19, 2024
    Configuration menu
    Copy the full SHA
    db46dce View commit details
    Browse the repository at this point in the history

  5. synthetic_hillslope: Suppress a pointless-string-statement warning.

    @samsrabin
    samsrabin committed Mar 19, 2024
    Configuration menu
    Copy the full SHA
    ddd2790 View commit details
    Browse the repository at this point in the history

  6. synthetic_hillslope: Functionize define_hillslope_geom_arrays().

    @samsrabin
    samsrabin committed Mar 19, 2024
    Configuration menu
    Copy the full SHA
    8a2fda7 View commit details
    Browse the repository at this point in the history

  7. synthetic_hillslope: Rename im and jm to n_lon and n_lat.

    @samsrabin
    samsrabin committed Mar 19, 2024
    Configuration menu
    Copy the full SHA
    65ed60d View commit details
    Browse the repository at this point in the history

Commits on Mar 20, 2024

  1. Run python/ctsm/hillslopes/ through black formatter.

    @samsrabin
    samsrabin committed Mar 20, 2024
    Configuration menu
    Copy the full SHA
    eb4906d View commit details
    Browse the repository at this point in the history

  2. Add previous commit to .git-blame-ignore-revs.

    @samsrabin
    samsrabin committed Mar 20, 2024
    Configuration menu
    Copy the full SHA
    e57d3f0 View commit details
    Browse the repository at this point in the history

  3. combine_gridcell_files: Clean up top of module.

    @samsrabin
    samsrabin committed Mar 20, 2024
    Configuration menu
    Copy the full SHA
    92b761c View commit details
    Browse the repository at this point in the history

  4. combine_gridcell_files: Split into parse_args() and main().

    @samsrabin
    samsrabin committed Mar 20, 2024
    Configuration menu
    Copy the full SHA
    077b131 View commit details
    Browse the repository at this point in the history

  5. Hillslope scripts: Replace use of stop.

    @samsrabin
    samsrabin committed Mar 20, 2024
    Configuration menu
    Copy the full SHA
    37b0718 View commit details
    Browse the repository at this point in the history

Commits on Mar 21, 2024

  1. combine_gridcell_files: Split out write_to_file() and create_variable… 

    …s().
    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    51b7b9c View commit details
    Browse the repository at this point in the history

  2. combine_gridcell_files: Move options to arguments.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    c80f08d View commit details
    Browse the repository at this point in the history

  3. combine_gridcell_files: Fix variable names in read-in netCDF.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    3f60e61 View commit details
    Browse the repository at this point in the history

  4. Share create_variables code between hillslope scripts. 

    Specifically, synthetic_hillslope.py and combine_gridcell_files.py.
* Canonical way to run these is now from tools/hillslopes/.
* Changes long_name of two variables in output of combine_gridcell_files.py.
    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    02318dd View commit details
    Browse the repository at this point in the history

  5. combine_gridcell_files: Suppress pylint warning about netCDF4.Dataset.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    08b8f7a View commit details
    Browse the repository at this point in the history

  6. combine_gridcell_files: Add a docstring.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    fa98b49 View commit details
    Browse the repository at this point in the history

  7. combine_gridcell_files: Don't use subprocess.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    bfceccb View commit details
    Browse the repository at this point in the history

  8. synthetic_hillslope: Use LANDFRAC_PFT instead of PFTDATA_MASK. 

    The latter is removed in ctsm5.2.
    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    6530250 View commit details
    Browse the repository at this point in the history

  9. combine_gridcell_files: Simplify some booleans.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    017a06e View commit details
    Browse the repository at this point in the history

  10. combine_gridcell_files: Improve variable names.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    a0784ab View commit details
    Browse the repository at this point in the history

  11. combine_gridcell_files: Don't assume Unix filepath separators.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    0982051 View commit details
    Browse the repository at this point in the history

  12. Replace loop_call.py with functionality in combine_gridcell_files. 

    Specifying a chunk index now requires the --cndx argument. Multiple chunk indices can be specified as a comma-separated list. Leaving off the --cndx argument will process all chunks. New argument --n-chunks defaults to 36.
    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    fa96067 View commit details
    Browse the repository at this point in the history

  13. combine_chunk_files: Remove some unneeded stuff.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    2aa15f3 View commit details
    Browse the repository at this point in the history

  14. combine_chunk_files: Turn options into arguments.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    34c59cd View commit details
    Browse the repository at this point in the history

  15. combine_chunk_files: Add --overwrite flag.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    f34c261 View commit details
    Browse the repository at this point in the history

  16. combine_chunk_files: Add --verbose flag.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    21ca682 View commit details
    Browse the repository at this point in the history

  17. combine_chunk_files: Reduce nesting.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    f0d34eb View commit details
    Browse the repository at this point in the history

  18. combine_chunk_files: Include dem_source.

    @samsrabin
    samsrabin committed Mar 21, 2024
    Configuration menu
    Copy the full SHA
    79b0a0d View commit details
    Browse the repository at this point in the history

Commits on Mar 22, 2024

  1. combine_chunk_files: Fix an error msg.

    @samsrabin
    samsrabin committed Mar 22, 2024
    Configuration menu
    Copy the full SHA
    5a54585 View commit details
    Browse the repository at this point in the history

  2. combine_chunk_files: Don't use subprocess.

    @samsrabin
    samsrabin committed Mar 22, 2024
    Configuration menu
    Copy the full SHA
    50d298f View commit details
    Browse the repository at this point in the history

  3. Point representative-hillslopes external at Sean's branch.

    @samsrabin
    samsrabin committed Mar 22, 2024
    Configuration menu
    Copy the full SHA
    a816cf6 View commit details
    Browse the repository at this point in the history

  4. combine_gridcell_files: 58 statements is OK.

    @samsrabin
    samsrabin committed Mar 22, 2024
    Configuration menu
    Copy the full SHA
    e0395d1 View commit details
    Browse the repository at this point in the history

Commits on Apr 2, 2024

  1. "pylint: disable=no-name-in-module" for importing netCDF4.Dataset.

    @samsrabin
    samsrabin committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    2bf1fc6 View commit details
    Browse the repository at this point in the history

  2. combine_chunk_files: Reformat with black.

    @samsrabin
    samsrabin committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    63c4873 View commit details
    Browse the repository at this point in the history

  3. Add previous commit to .git-blame-ignore-revs.

    @samsrabin
    samsrabin committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    65ecbeb View commit details
    Browse the repository at this point in the history

  4. combine_chunk_files: Reduce nesting.

    @samsrabin
    samsrabin committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    c74d848 View commit details
    Browse the repository at this point in the history

  5. Convenience functions for making hillslope variables.

    @samsrabin
    samsrabin committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    54e5abb View commit details
    Browse the repository at this point in the history

  6. combine_chunk_files: Remove unused variable 'command'.

    @samsrabin
    samsrabin committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    9a94ab0 View commit details
    Browse the repository at this point in the history

  7. combine_chunk_files: Simplify top of loop thru chunks.

    @samsrabin
    samsrabin committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    dc0add9 View commit details
    Browse the repository at this point in the history

  8. combine_chunk_files: Rename initializeArrays to arrays_uninitialized.

    @samsrabin
    samsrabin committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    f1ce7e6 View commit details
    Browse the repository at this point in the history

  9. combine_chunk_files: Simplify some booleans.

    @samsrabin
    samsrabin committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    27c2567 View commit details
    Browse the repository at this point in the history

  10. combine_chunk_files: Rename addBedrock and addStream for pylint.

    @samsrabin
    samsrabin committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    eb03d81 View commit details
    Browse the repository at this point in the history

  11. combine_chunk_files: Move variable fill to immediately after creation.

    @samsrabin
    samsrabin committed Apr 2, 2024
    Configuration menu
    Copy the full SHA
    c931942 View commit details
    Browse the repository at this point in the history

Commits on Apr 3, 2024

  1. combine_chunk_files: Save just hillslope_file. Use xarray.

    @samsrabin
    samsrabin committed Apr 3, 2024
    Configuration menu
    Copy the full SHA
    68b17cc View commit details
    Browse the repository at this point in the history

  2. Add --n-bins arg to combine_chunk_files and combine_gridcell_files.

    @samsrabin
    samsrabin committed Apr 3, 2024
    Configuration menu
    Copy the full SHA
    7b67d61 View commit details
    Browse the repository at this point in the history

  3. combine_chunk_files: Use trapezoid instead of section_quad files.

    @samsrabin
    samsrabin committed Apr 3, 2024
    Configuration menu
    Copy the full SHA
    75c9ca4 View commit details
    Browse the repository at this point in the history

  4. combine_chunk_files: Remove coordinate vars nmaxhillcol and nhillslope.

    @samsrabin
    samsrabin committed Apr 3, 2024
    Configuration menu
    Copy the full SHA
    752a1c7 View commit details
    Browse the repository at this point in the history

  5. combine_chunk_files: Save as netCDF4-classic.

    @samsrabin
    samsrabin committed Apr 3, 2024
    Configuration menu
    Copy the full SHA
    8f108b8 View commit details
    Browse the repository at this point in the history

  6. combine_gridcell_files: Improve --n-bins description.

    @samsrabin
    samsrabin committed Apr 3, 2024
    Configuration menu
    Copy the full SHA
    060a66d View commit details
    Browse the repository at this point in the history

  7. Add --hillslope-form to combine_gridcell_files and combine_chunk_files.

    @samsrabin
    samsrabin committed Apr 3, 2024
    Configuration menu
    Copy the full SHA
    589877b View commit details
    Browse the repository at this point in the history

  8. combine_chunk_files: Functionize read_hillslope_vars().

    @samsrabin
    samsrabin committed Apr 3, 2024
    Configuration menu
    Copy the full SHA
    89e25bd View commit details
    Browse the repository at this point in the history

  9. combine_chunk_files: Remove unused variable h_pftndx.

    @samsrabin
    samsrabin committed Apr 3, 2024
    Configuration menu
    Copy the full SHA
    f27f7de View commit details
    Browse the repository at this point in the history

Commits on Apr 4, 2024

  1. combine_chunk_files: Refactor into class HillslopeVars.

    @samsrabin
    samsrabin committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    712c566 View commit details
    Browse the repository at this point in the history

  2. combine_chunk_files: Resolve variable name pylint complaints.

    @samsrabin
    samsrabin committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    8f92840 View commit details
    Browse the repository at this point in the history

  3. Split HillslopeVars.read() into versions for old/new varnames.

    @samsrabin
    samsrabin committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    a880ed7 View commit details
    Browse the repository at this point in the history

  4. combine_chunk_files: Remove unused imports.

    @samsrabin
    samsrabin committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    9e8fae1 View commit details
    Browse the repository at this point in the history

  5. Add wrapper script tools/hillslopes/combine_chunk_files.

    @samsrabin
    samsrabin committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    fee572c View commit details
    Browse the repository at this point in the history

  6. Add tools/external/ to .gitignore.

    @samsrabin
    samsrabin committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    ef103b1 View commit details
    Browse the repository at this point in the history

  7. synthetic_hillslope now saves hillslope_file instead of fsurdat.

    @samsrabin
    samsrabin committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    063a6d9 View commit details
    Browse the repository at this point in the history

  8. combine_chunk_files: Don't use xarray. 

    Avoids creating new _FillValue variable attribute.
    @samsrabin
    samsrabin committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    bc4304c View commit details
    Browse the repository at this point in the history

  9. Move HillslopeVars to hillslope_utils.

    @samsrabin
    samsrabin committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    3a4fe27 View commit details
    Browse the repository at this point in the history

  10. combine_gridcell_files: Use HillslopeVars.

    @samsrabin
    samsrabin committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    66eba03 View commit details
    Browse the repository at this point in the history

  11. combine_gridcell_files: Only read hillslope data dimensions/settings … 

    …once.
    @samsrabin
    samsrabin committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    1958107 View commit details
    Browse the repository at this point in the history

  12. HillslopeVars: Mark internal functions with leading underscore.

    @samsrabin
    samsrabin committed Apr 4, 2024
    Configuration menu
    Copy the full SHA
    0eb3ad1 View commit details
    Browse the repository at this point in the history

Commits on Apr 5, 2024

  1. Rename sjm and sim to n_lat and n_lon.

    @samsrabin
    samsrabin committed Apr 5, 2024
    Configuration menu
    Copy the full SHA
    6218aee View commit details
    Browse the repository at this point in the history

  2. Bugfix for HillslopeVars.update() default arg.

    @samsrabin
    samsrabin committed Apr 5, 2024
    Configuration menu
    Copy the full SHA
    6789c15 View commit details
    Browse the repository at this point in the history

  3. Bugfix: Use of chunk_mask in HillslopeVars.update().

    @samsrabin
    samsrabin committed Apr 5, 2024
    Configuration menu
    Copy the full SHA
    fb53d01 View commit details
    Browse the repository at this point in the history

Commits on Apr 16, 2024

  1. combine_chunk_files.py: Bugfix for --n-chunks argparse.

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    d3e9a43 View commit details
    Browse the repository at this point in the history

  2. hillslope_utils.py: Use NETCDF_FORMAT constant.

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    ec82aa3 View commit details
    Browse the repository at this point in the history

  3. hillslope_utils.py: Functionize add_longxy_latixy_nc().

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    a9e05b0 View commit details
    Browse the repository at this point in the history

  4. combine_chunk_files.py: Save LATIXY and LONGXY.

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    c89600c View commit details
    Browse the repository at this point in the history

  5. hillslope_utils.py: Change LONGXY/LATIXY metadata to match fsurdat.

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    a3287e1 View commit details
    Browse the repository at this point in the history

  6. combine_chunk_files.py: Save AREA.

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    ff58969 View commit details
    Browse the repository at this point in the history

  7. combine_chunk_files.py: Add input_file and creation_date.

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    fb2caaf View commit details
    Browse the repository at this point in the history

  8. combine_chunk_files.py: Functionize finish_saving().

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    0fc80f5 View commit details
    Browse the repository at this point in the history

  9. hillslope_utils.py: Functionize _remove_hillslope_data().

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    0261c18 View commit details
    Browse the repository at this point in the history

  10. Reformat hillslope scripts with black.

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    7053b29 View commit details
    Browse the repository at this point in the history

  11. Add previous commit to .git-blame-ignore-revs.

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    71be2e7 View commit details
    Browse the repository at this point in the history

  12. synthetic_hillslope.py: Remove unused import shutil.

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    a981e69 View commit details
    Browse the repository at this point in the history

  13. synthetic_hillslope.py: Resolve a few pylint complaints.

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    90e4810 View commit details
    Browse the repository at this point in the history

  14. synthetic_hillslope.py: Add default info to --help.

    @samsrabin
    samsrabin committed Apr 16, 2024
    Configuration menu
    Copy the full SHA
    b4a78e7 View commit details
    Browse the repository at this point in the history

Commits on Apr 25, 2024

  1. synthetic_hillslopes: Use HillslopeVars. 

    Identical to previous outputs except a long name and a unit.
    @samsrabin
    samsrabin committed Apr 25, 2024
    Configuration menu
    Copy the full SHA
    90e1dfe View commit details
    Browse the repository at this point in the history

  2. synthetic_hillslope: Use context manager to open input file.

    @samsrabin
    samsrabin committed Apr 25, 2024
    Configuration menu
    Copy the full SHA
    5643e3f View commit details
    Browse the repository at this point in the history

  3. Improve hillslope script --help outputs.

    @samsrabin
    samsrabin committed Apr 25, 2024
    Configuration menu
    Copy the full SHA
    dc2cd68 View commit details
    Browse the repository at this point in the history

Commits on Sep 9, 2024

  1. Format with black.

    @samsrabin
    samsrabin committed Sep 9, 2024
    Configuration menu
    Copy the full SHA
    179e2ee View commit details
    Browse the repository at this point in the history

  2. Add previous commit to .git-blame-ignore-revs.

    @samsrabin
    samsrabin committed Sep 9, 2024
    Configuration menu
    Copy the full SHA
    8be2c38 View commit details
    Browse the repository at this point in the history

  3. Refactor: New functions in synthetic_hillslope to satisfy pylint.

    @samsrabin
    samsrabin committed Sep 9, 2024
    Configuration menu
    Copy the full SHA
    d7bd49c View commit details
    Browse the repository at this point in the history

  4. Resolve or ignore invalid-name pylint warning in synthetic_hillslope.

    @samsrabin
    samsrabin committed Sep 9, 2024
    Configuration menu
    Copy the full SHA
    5bbdf89 View commit details
    Browse the repository at this point in the history

  5. synthetic_hillslopes: Copy Dataset_Version from original.

    @samsrabin
    samsrabin committed Sep 9, 2024
    Configuration menu
    Copy the full SHA
    25292b6 View commit details
    Browse the repository at this point in the history

  6. synthetic_hillslope: Add optional --fsurdat flag to save fsurdat inst… 

    …ead of hillslope_file.
    @samsrabin
    samsrabin committed Sep 9, 2024
    Configuration menu
    Copy the full SHA
    7ad47fd View commit details
    Browse the repository at this point in the history

  7. Dataset_Version no longer needed manually.

    @samsrabin
    samsrabin committed Sep 9, 2024
    Configuration menu
    Copy the full SHA
    005b7fa View commit details
    Browse the repository at this point in the history

Commits on Sep 23, 2024

  1. combine_gridcell_files: Improve description of --overwrite.

    @samsrabin
    samsrabin committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    2918296 View commit details
    Browse the repository at this point in the history

  2. combine_gridcell_files: Remove --n-chunks argument. 

    If --cndx not given, will automatically detect chunks to process based on filenames in input dir.
    @samsrabin
    samsrabin committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    8fdd12a View commit details
    Browse the repository at this point in the history

  3. combine_gridcell_files: Improve description.

    @samsrabin
    samsrabin committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    f391c75 View commit details
    Browse the repository at this point in the history

  4. combine_chunk_files: Improve description.

    @samsrabin
    samsrabin committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    0fac7b9 View commit details
    Browse the repository at this point in the history

  5. Functionize get_chunks_to_process(); move to hillslope_utils.

    @samsrabin
    samsrabin committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    9920c82 View commit details
    Browse the repository at this point in the history

  6. combine_chunk_files: Remove --n-chunks argument. 

    If --cndx not given, will automatically detect chunks to process based on filenames in input dir.
    @samsrabin
    samsrabin committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    04217bc View commit details
    Browse the repository at this point in the history

  7. Bugfix to make get_mask_var work in combine_chunk_files.

    @samsrabin
    samsrabin committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    39e1841 View commit details
    Browse the repository at this point in the history

  8. combine_chunk_files: Throw error if no files found.

    @samsrabin
    samsrabin committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    c3d1bbc View commit details
    Browse the repository at this point in the history

  9. combine_chunk_files: Work on surface datasets w/o PFTDATA_MASK.

    @samsrabin
    samsrabin committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    b868d05 View commit details
    Browse the repository at this point in the history

  10. Remove a troubleshooting print().

    @samsrabin
    samsrabin committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    737d6dc View commit details
    Browse the repository at this point in the history

  11. combine_chunk_files: Work on surface datasets w/o AREA.

    @samsrabin
    samsrabin committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    9105ca8 View commit details
    Browse the repository at this point in the history

  12. combine_chunk_files: Add a docstring.

    @samsrabin
    samsrabin committed Sep 23, 2024
    Configuration menu
    Copy the full SHA
    54a93ed View commit details
    Browse the repository at this point in the history

Commits on Oct 1, 2024

  1. synthetic_hillslope.py: Add date suffix to default output.

    @samsrabin
    samsrabin committed Oct 1, 2024
    Configuration menu
    Copy the full SHA
    3fdea34 View commit details
    Browse the repository at this point in the history

  2. synthetic_hillslope.py: Copy LATIXY/LONGXY to output.

    @samsrabin
    samsrabin committed Oct 1, 2024
    Configuration menu
    Copy the full SHA
    f510b4d View commit details
    Browse the repository at this point in the history

Commits on Oct 3, 2024

  1. Point doc-builder to my fork. Avoid old fork of sphinx_rtd_theme. 

    Based on ESMCI/cime#4613. Builds OK, but I'm not sure if the new versions setup works.
    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    bca4618 View commit details
    Browse the repository at this point in the history

  2. Resolve some sphinx warnings.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    4c2361d View commit details
    Browse the repository at this point in the history

  3. Fix MOSART conceptual figure references.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    490d229 View commit details
    Browse the repository at this point in the history

  4. Replace a reference to RTM with MOSART.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    4a9e1a2 View commit details
    Browse the repository at this point in the history

  5. Resolve "WARNING: unsupported theme option 'versions' given" 

    Might break things?
    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    497e991 View commit details
    Browse the repository at this point in the history

  6. Add sphinx_mdinclude.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    3511baa View commit details
    Browse the repository at this point in the history

  7. Add ctsm-docs.yml.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    dcb2f0f View commit details
    Browse the repository at this point in the history

  8. Replace ctsm-docs.yml with equivalent requirements.txt.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    94874d2 View commit details
    Browse the repository at this point in the history

  9. Copy CIME's docs.yml workflow to our repo.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    5f54b61 View commit details
    Browse the repository at this point in the history

  10. Update docs.yml with our URL.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    18598eb View commit details
    Browse the repository at this point in the history

  11. Pare down doc/requirements.txt.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    e95c291 View commit details
    Browse the repository at this point in the history

  12. Have PR preview actions run even on branches from forks

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    c3788bb View commit details
    Browse the repository at this point in the history

  13. Add pages:write perms to build-and-deploy action.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    674ab46 View commit details
    Browse the repository at this point in the history

  14. Update peaceiris/actions-gh-pages from v3 to v4.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    a5063f6 View commit details
    Browse the repository at this point in the history

  15. Set gibberish publish_branch.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    a5f4573 View commit details
    Browse the repository at this point in the history

  16. Set external_repository to hopefully publish to user's fork.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    442f13d View commit details
    Browse the repository at this point in the history

  17. Remove pages preview/push stuff; only check docs build.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    76c3238 View commit details
    Browse the repository at this point in the history

  18. Remove write perms for test-build action.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    03857ff View commit details
    Browse the repository at this point in the history

  19. Delete cleanup job.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    dccbcdd View commit details
    Browse the repository at this point in the history

  20. If PR branch is from ESCOMP/CTSM (not fork), run build-and-deploy.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    868e0d0 View commit details
    Browse the repository at this point in the history

  21. Only do test-build if the PR branch is from a fork, not ESCOMP/CTSM.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    1fa1eb5 View commit details
    Browse the repository at this point in the history

  22. build_docs will now fail if sphinx warnings are generated. 

    Via updating doc-builder external to c51795f; branch update-20241002: Merge branch 'warnings-as-errors' into update-20241002
    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    9d5a455 View commit details
    Browse the repository at this point in the history

  23. TEST: Introduce Sphinx errors. Github workflow should fail.

    @samsrabin
    samsrabin committed Oct 3, 2024
    Configuration menu
    Copy the full SHA
    ee94753 View commit details
    Browse the repository at this point in the history

Commits on Oct 4, 2024

  1. docs.yml now fails when sphinx has warnings.

    @samsrabin
    samsrabin committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    a893eb5 View commit details
    Browse the repository at this point in the history

  2. Revert "Only do test-build if the PR branch is from a fork, not ESCOM… 

    …P/CTSM."

This reverts commit 1fa1eb5.
    @samsrabin
    samsrabin committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    dc8dd92 View commit details
    Browse the repository at this point in the history

  3. Add docs.yml job to test doc-builder.

    @samsrabin
    samsrabin committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    adb99fc View commit details
    Browse the repository at this point in the history

  4. Fix SPHINXOPTS in test-build-makefile.

    @samsrabin
    samsrabin committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    da0a8bd View commit details
    Browse the repository at this point in the history

  5. Fix working dir of test-doc-builder.

    @samsrabin
    samsrabin committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    3575ea4 View commit details
    Browse the repository at this point in the history

  6. Revert "TEST: Introduce Sphinx errors. Github workflow should fail." 

    This reverts commit ee94753.
    @samsrabin
    samsrabin committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    6fb71bc View commit details
    Browse the repository at this point in the history

  7. TEST: Introduce Sphinx errors. Github workflow should fail.

    @samsrabin
    samsrabin committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    8bbdf94 View commit details
    Browse the repository at this point in the history

  8. Revert "TEST: Introduce Sphinx errors. Github workflow should fail." 

    This reverts commit 8bbdf94.
    @samsrabin
    samsrabin committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    eb74874 View commit details
    Browse the repository at this point in the history

  9. Disable "Push new docs."

    @samsrabin
    samsrabin committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    6a3049e View commit details
    Browse the repository at this point in the history

  10. Disable "needs: cleanup" for build-and-deploy.

    @samsrabin
    samsrabin committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    259ad13 View commit details
    Browse the repository at this point in the history

  11. Publish preview to gh-pages-preview instead of gh-pages.

    @samsrabin
    samsrabin committed Oct 4, 2024
    Configuration menu
    Copy the full SHA
    afd87b6 View commit details
    Browse the repository at this point in the history

Commits on Oct 7, 2024

  1. Delete docs cleanup and build-and-deploy jobs.

    @samsrabin
    samsrabin committed Oct 7, 2024
    Configuration menu
    Copy the full SHA
    71c4386 View commit details
    Browse the repository at this point in the history

  2. Docs workflow should run on PRs going to b4b-dev too.

    @samsrabin
    samsrabin committed Oct 7, 2024
    Configuration menu
    Copy the full SHA
    76e2c6e View commit details
    Browse the repository at this point in the history

  3. Remove action version specifiers from docs workflow.

    @samsrabin
    samsrabin committed Oct 7, 2024
    Configuration menu
    Copy the full SHA
    2d60500 View commit details
    Browse the repository at this point in the history

  4. Remove branches specifiers from docs workflow.

    @samsrabin
    samsrabin committed Oct 7, 2024
    Configuration menu
    Copy the full SHA
    b7c888e View commit details
    Browse the repository at this point in the history

  5. Revert "Remove action version specifiers from docs workflow." 

    This reverts commit 2d60500.
    @samsrabin
    samsrabin committed Oct 7, 2024
    Configuration menu
    Copy the full SHA
    0752bec View commit details
    Browse the repository at this point in the history

  6. Revert doc-builder to canonical v1.0.8.

    @samsrabin
    samsrabin committed Oct 7, 2024
    Configuration menu
    Copy the full SHA
    5fed746 View commit details
    Browse the repository at this point in the history

Commits on Oct 8, 2024

  1. Merge branch 'update-docs-builder-2' into hillslope-scripts-2 

    # Conflicts:
#	.git-blame-ignore-revs
#	.gitignore
#	Externals.cfg
    @samsrabin
    samsrabin committed Oct 8, 2024
    Configuration menu
    Copy the full SHA
    490f88f View commit details
    Browse the repository at this point in the history

  2. Point doc-builder at my branch. 

    * Treats Sphinx warnings as errors (see also PR at ESMCI/doc-builder#4)
* Points at my Docker container, which includes Python package needed for mdinclude in .rst files
    @samsrabin
    samsrabin committed Oct 8, 2024
    Configuration menu
    Copy the full SHA
    3a0394c View commit details
    Browse the repository at this point in the history

  3. Point representative-hillslopes submodule at my branch. 

    Updated README.
    @samsrabin
    samsrabin committed Oct 8, 2024
    Configuration menu
    Copy the full SHA
    5f8f958 View commit details
    Browse the repository at this point in the history

  4. Add User's Guide page: creating-hillslope-datasets.rst.

    @samsrabin
    samsrabin committed Oct 8, 2024
    Configuration menu
    Copy the full SHA
    46fbfce View commit details
    Browse the repository at this point in the history

Commits on Oct 11, 2024

  1. Actually add representative-hillslopes external.

    @samsrabin
    samsrabin committed Oct 11, 2024
    Configuration menu
    Copy the full SHA
    9ab3e6b View commit details
    Browse the repository at this point in the history

  2. Format hillslopes scripts with black.

    @samsrabin
    samsrabin committed Oct 11, 2024
    Configuration menu
    Copy the full SHA
    4b03f5a View commit details
    Browse the repository at this point in the history

  3. Add previous commit to .git-blame-ignore-revs.

    @samsrabin
    samsrabin committed Oct 11, 2024
    Configuration menu
    Copy the full SHA
    cb2363a View commit details
    Browse the repository at this point in the history

  4. build_docs script now exits with error if anything goes wrong.

    @samsrabin
    samsrabin committed Oct 11, 2024
    Configuration menu
    Copy the full SHA
    2c5f3ea View commit details
    Browse the repository at this point in the history

Commits on Oct 13, 2024

  1. Download submods in docs.yml.

    @samsrabin
    samsrabin committed Oct 13, 2024
    Configuration menu
    Copy the full SHA
    96f7ac5 View commit details
    Browse the repository at this point in the history

  2. Update git-fleximod to v0.9.2; fixes g-f update -o call. 

    Closes ESCOMP#2786.
    @samsrabin
    samsrabin committed Oct 13, 2024
    Configuration menu
    Copy the full SHA
    b7b9183 View commit details
    Browse the repository at this point in the history

  3. Docs build test: Call git-fleximod in its own step.

    @samsrabin
    samsrabin committed Oct 13, 2024
    Configuration menu
    Copy the full SHA
    e12bd1e View commit details
    Browse the repository at this point in the history

  4. Docs build check: Remove .git/hooks to avoid git-lfs error.

    @samsrabin
    samsrabin committed Oct 13, 2024
    Configuration menu
    Copy the full SHA
    4bce938 View commit details
    Browse the repository at this point in the history

Commits on Oct 15, 2024

  1. Add system tests for CTSM hillslope scripts.

    @samsrabin
    samsrabin committed Oct 15, 2024
    Configuration menu
    Copy the full SHA
    c6df412 View commit details
    Browse the repository at this point in the history

  2. Hillslope scripts now use CTSM logging.

    @samsrabin
    samsrabin committed Oct 15, 2024
    Configuration menu
    Copy the full SHA
    61122a2 View commit details
    Browse the repository at this point in the history

  3. Exercise a bit more of the CTSM-specific hillslope scripts. 

    By renaming some of the test hillslope gridcell files, this tests the scripts' ability to handle (a) multiple gridcells per chunk and (b) missing chunks.
    @samsrabin
    samsrabin committed Oct 15, 2024
    Configuration menu
    Copy the full SHA
    ae15b23 View commit details
    Browse the repository at this point in the history

  4. Add another check to test_combine_gridcell_files().

    @samsrabin
    samsrabin committed Oct 15, 2024
    Configuration menu
    Copy the full SHA
    c7dbb53 View commit details
    Browse the repository at this point in the history

  5. Edit paths in creating-hillslope-datasets.rst.

    @samsrabin
    samsrabin committed Oct 15, 2024
    Configuration menu
    Copy the full SHA
    a6af9ac View commit details
    Browse the repository at this point in the history