Fix rare NoSolutionError

At max_homology_length = 5 no solution is found sometimes.
Edinburgh-Genome-Foundry · Jan 13, 2025 · 0cb0710 · 0cb0710
1 parent 7f7bb09
commit 0cb0710
Showing 1 changed file with 5 additions and 2 deletions.
diff --git a/tests/builtin_specifications/test_AllowPrimer.py b/tests/builtin_specifications/test_AllowPrimer.py
@@ -1,23 +1,26 @@
 """Example of use of the AvoidChanges as an objective to minimize modifications
 of a sequence."""
 
+import numpy
+
 from dnachisel import AllowPrimer, DnaOptimizationProblem
 
 
 def test_AllowPrimer():
+    numpy.random.seed(123)
     primers = ["ATTGCGCCAAACT", "TAATCCACCCTAAT", "ATTCACACTTCAA"]
     problem = DnaOptimizationProblem(
         sequence=40 * "A",
         constraints=[
             AllowPrimer(
                 tmin=50,
                 tmax=60,
-                max_homology_length=5,
+                max_homology_length=7,
                 location=(10, 30),
                 avoid_heterodim_with=primers,
             )
         ],
-        logger=None
+        logger=None,
     )
     problem.resolve_constraints()
     assert problem.all_constraints_pass()