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AnalyseGEOtop

R package for GEOtop simulation analysis including functionality for

• creating GEOtop input maps for a specific basin (using SAGA GIS library - RSAGA)
• read single / multiple point output from GEOtop simulation
• GEOtop output map animation (using ImageMagick)
• diagnostic plots on hydrological budget in GEOtop 3d simulation
• visualisation of Soil Water Retention Curve (van Genuchten model)

This package is based on the R package geotopbricks

How to start

First install the package with:

$ R
> install.packages("devtools")
> library(devtools)
> install_github("EURAC-Ecohydro/AnalyseGEOtop")

and then import the library with:

> library(AnalyseGeotop)

Folders structure

The present folders are:

• data: observations in .Rdata and .csv format;
• example: 1D analysis (Monte CL???)
• inst: scripts to plot point and basin files
• man: function description automatically generated by R
• R: functions
• validation_data: data in .csv format

.
├── AnalyseGEOtop.Rproj
├── data
│   ├── datalist
│   ├── Kaltern_SoilWatRet.RData
│   ├── lookup_tbl_observation.RData
│   ├── observations_B2.RData
│   ├── observations_Kaltern.RData
│   ├── observed_B2_d.csv
│   ├── observed_B2_h.csv
│   ├── SWCinfo.RData
│   ├── tbl_observations
│   └── validation.RData
├── DESCRIPTION
├── example
│   └── run_1d_Monte_CL.R
├── examples.R
├── inst
│   ├── GEOtop_Plot_1D
│   │   ├── Compare_Inputs.R
│   │   ├── GEOtop_Plot_Point_Johannes.R
│   │   └── GEOtop_Plot_Point.R
│   ├── GEOtop_Plot_3D
│   │   ├── GEOtop_Plot_Basin_Johannes.R
│   │   └── GEOtop_Plot_Basin.R
│   └── Rmd
│       ├── Analyse_GEOtop_point_simulation.Rmd
│       ├── Analyse_Multi_GEOtop_point_simulation.Rmd
│       ├── Verificate_GEOtop_point_simulation.md
│       └── Verificate_GEOtop_point_simulation.Rmd
├── man
│   ├── GEOtop_animateMAPS.Rd
│   ├── GEOtop_CheckHydroBudget.Rd
│   ├── GEOtop_CreateInptsMAPS.Rd
│   ├── GEOtop_EfluxOcanopy.Rd
│   ├── GEOtop_multiplePointPlot_Montecini.Rd
│   ├── GEOtop_ReadMultiPoint.Rd
│   ├── GEOtop_ReadPlotRst.Rd
│   ├── GEOtop_ReadPointData_Generalized.Rd
│   ├── GEOtop_ReadPointVar.Rd
│   ├── GEOtop_ReadValidationData.Rd
│   ├── GEOtop_VisSoilWaterRet_gg.Rd
│   └── GEOtop_VisSoilWaterRet.Rd
├── NAMESPACE
├── R
│   ├── GEOtop_AnimateMaps.R
│   ├── GEOtop_CheckHydroBudget.R
│   ├── GEOtop_CreateInptsMAPS.R
│   ├── GEOtop_EfluxOcanopy.R
│   ├── GEOtop_multiplePointPlot_Montecini.R
│   ├── Geotop_Plot_Loop.R
│   ├── GEOtop_ReadMultiPoint.R
│   ├── GEOtop_ReadPlotRst.R
│   ├── GEOtop_ReadPointData_Generalized.R
│   ├── GEOtop_ReadPointData.R
│   ├── GEOtop_ReadPointVar.R
│   ├── GEOtop_readValidationData.R
│   ├── GEOtop_UpdateLookUpTbl.R
│   ├── Geotop_VisSoilWaterRet_gg.R
│   └── GEOtop_VisSoilWaterRet.R
├── README.md
└── validation_data
    ├── EnergyFluxesVinschgau_I_2011_05-2014_04.csv
    ├── ET_B2.csv
    ├── VG1_06-11.csv
    └── VG2_06-11.csv

9 directories, 56 files