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Add an initial, skeleton page for Variant Entity Viewer, with appropr…
…iate routing (#1073) - Added a new, so far mostly empty, view for the Entity Viewer that will evolve into a view for variants - Updated server-side fetch code for EntityViewer pages — split it into gene data fetching vs variant data fetching - Picking an allele (first alternative allele) and adding it as a url parameter
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/** | ||
* See the NOTICE file distributed with this work for additional information | ||
* regarding copyright ownership. | ||
* | ||
* Licensed under the Apache License, Version 2.0 (the "License"); | ||
* you may not use this file except in compliance with the License. | ||
* You may obtain a copy of the License at | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, software | ||
* distributed under the License is distributed on an "AS IS" BASIS, | ||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
* See the License for the specific language governing permissions and | ||
* limitations under the License. | ||
*/ | ||
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import React from 'react'; | ||
import { useNavigate } from 'react-router-dom'; | ||
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import * as urlFor from 'src/shared/helpers/urlHelper'; | ||
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import { useAppSelector, useAppDispatch } from 'src/store'; | ||
import useEntityViewerIds from 'src/content/app/entity-viewer/hooks/useEntityViewerIds'; | ||
import useEntityViewerUrlCheck from 'src/content/app/entity-viewer/hooks/useEntityViewerUrlChecks'; | ||
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import { getBreakpointWidth } from 'src/global/globalSelectors'; | ||
import { getGenomeById } from 'src/shared/state/genome/genomeSelectors'; | ||
import { | ||
isEntityViewerSidebarOpen, | ||
getEntityViewerSidebarModalView | ||
} from 'src/content/app/entity-viewer/state/sidebar/entityViewerSidebarSelectors'; | ||
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import { deleteActiveEntityIdAndSave } from 'src/content/app/entity-viewer/state/general/entityViewerGeneralSlice'; | ||
import { toggleSidebar } from 'src/content/app/entity-viewer/state/sidebar/entityViewerSidebarSlice'; | ||
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import { StandardAppLayout } from 'src/shared/components/layout'; | ||
import EntityViewerSidebarToolstrip from './shared/components/entity-viewer-sidebar/entity-viewer-sidebar-toolstrip/EntityViewerSidebarToolstrip'; | ||
import EntityViewerSidebarModal from 'src/content/app/entity-viewer/shared/components/entity-viewer-sidebar/entity-viewer-sidebar-modal/EntityViewerSidebarModal'; | ||
import EntityViewerTopbar from './shared/components/entity-viewer-topbar/EntityViewerTopbar'; | ||
import GeneView from './gene-view/GeneView'; | ||
import GeneViewSidebar from './gene-view/components/gene-view-sidebar/GeneViewSideBar'; | ||
import GeneViewSidebarTabs from './gene-view/components/gene-view-sidebar-tabs/GeneViewSidebarTabs'; | ||
import MissingFeatureError from 'src/shared/components/error-screen/url-errors/MissingFeatureError'; | ||
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const EntityViewerForGene = () => { | ||
const { activeGenomeId, activeEntityId } = useEntityViewerIds(); | ||
const { | ||
genomeIdInUrl, | ||
entityIdInUrl, | ||
isFetching: isVerifyingUrl, | ||
isMissingEntity | ||
} = useEntityViewerUrlCheck(); | ||
const genome = useAppSelector((state) => | ||
getGenomeById(state, activeGenomeId ?? '') | ||
); | ||
const isSidebarOpen = useAppSelector(isEntityViewerSidebarOpen); | ||
const isSidebarModalOpen = Boolean( | ||
useAppSelector(getEntityViewerSidebarModalView) | ||
); | ||
const viewportWidth = useAppSelector(getBreakpointWidth); | ||
const dispatch = useAppDispatch(); | ||
const navigate = useNavigate(); | ||
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const openEntityViewerInterstitial = () => { | ||
dispatch(deleteActiveEntityIdAndSave()); | ||
navigate(urlFor.entityViewer({ genomeId: genomeIdInUrl })); | ||
}; | ||
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if (!activeGenomeId || !activeEntityId || isVerifyingUrl) { | ||
return null; | ||
} | ||
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if (isMissingEntity) { | ||
return ( | ||
<MissingFeatureError | ||
featureId={entityIdInUrl as string} | ||
genome={genome} | ||
showTopBar={true} | ||
onContinue={openEntityViewerInterstitial} | ||
/> | ||
); | ||
} | ||
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return ( | ||
<StandardAppLayout | ||
mainContent={<GeneView />} | ||
topbarContent={<EntityViewerTopbar />} | ||
sidebarContent={ | ||
<SidebarContent isSidebarModalOpen={isSidebarModalOpen} /> | ||
} | ||
sidebarNavigation={<GeneViewSidebarTabs />} | ||
sidebarToolstripContent={<EntityViewerSidebarToolstrip />} | ||
isSidebarOpen={isSidebarOpen} | ||
onSidebarToggle={() => dispatch(toggleSidebar())} | ||
isDrawerOpen={false} | ||
viewportWidth={viewportWidth} | ||
/> | ||
); | ||
}; | ||
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const SidebarContent = (props: { isSidebarModalOpen: boolean }) => { | ||
return props.isSidebarModalOpen ? ( | ||
<EntityViewerSidebarModal /> | ||
) : ( | ||
<GeneViewSidebar /> | ||
); | ||
}; | ||
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export default EntityViewerForGene; |
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/** | ||
* See the NOTICE file distributed with this work for additional information | ||
* regarding copyright ownership. | ||
* | ||
* Licensed under the Apache License, Version 2.0 (the "License"); | ||
* you may not use this file except in compliance with the License. | ||
* You may obtain a copy of the License at | ||
* http://www.apache.org/licenses/LICENSE-2.0 | ||
* | ||
* Unless required by applicable law or agreed to in writing, software | ||
* distributed under the License is distributed on an "AS IS" BASIS, | ||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
* See the License for the specific language governing permissions and | ||
* limitations under the License. | ||
*/ | ||
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import React from 'react'; | ||
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import { useAppSelector, useAppDispatch } from 'src/store'; | ||
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import { getBreakpointWidth } from 'src/global/globalSelectors'; | ||
import { | ||
isEntityViewerSidebarOpen, | ||
getEntityViewerSidebarModalView | ||
} from 'src/content/app/entity-viewer/state/sidebar/entityViewerSidebarSelectors'; | ||
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import { toggleSidebar } from 'src/content/app/entity-viewer/state/sidebar/entityViewerSidebarSlice'; | ||
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import { StandardAppLayout } from 'src/shared/components/layout'; | ||
import EntityViewerSidebarToolstrip from './shared/components/entity-viewer-sidebar/entity-viewer-sidebar-toolstrip/EntityViewerSidebarToolstrip'; | ||
import EntityViewerSidebarModal from 'src/content/app/entity-viewer/shared/components/entity-viewer-sidebar/entity-viewer-sidebar-modal/EntityViewerSidebarModal'; | ||
import VariantView from './variant-view/VariantView'; | ||
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const EntityViewerForVariant = () => { | ||
const isSidebarOpen = useAppSelector(isEntityViewerSidebarOpen); | ||
const isSidebarModalOpen = Boolean( | ||
useAppSelector(getEntityViewerSidebarModalView) | ||
); | ||
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const viewportWidth = useAppSelector(getBreakpointWidth); | ||
const dispatch = useAppDispatch(); | ||
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return ( | ||
<StandardAppLayout | ||
mainContent={<VariantView />} | ||
topbarContent={<div>Variant summary for top bar goes here</div>} | ||
sidebarContent={ | ||
<SidebarContent isSidebarModalOpen={isSidebarModalOpen} /> | ||
} | ||
sidebarNavigation={null} | ||
sidebarToolstripContent={<EntityViewerSidebarToolstrip />} | ||
isSidebarOpen={isSidebarOpen} | ||
onSidebarToggle={() => dispatch(toggleSidebar())} | ||
isDrawerOpen={false} | ||
viewportWidth={viewportWidth} | ||
/> | ||
); | ||
}; | ||
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const SidebarContent = (props: { isSidebarModalOpen: boolean }) => { | ||
return props.isSidebarModalOpen ? ( | ||
<EntityViewerSidebarModal /> | ||
) : ( | ||
<div>Variant information for sidebar goes here</div> | ||
); | ||
}; | ||
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export default EntityViewerForVariant; |
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