added regex for cleaning study data

Ensembl · Oct 21, 2024 · ab619b6 · ab619b6
1 parent c3be8ad
commit ab619b6
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/pipelines/nextflow/workflows/bin/get_metadata.py b/pipelines/nextflow/workflows/bin/get_metadata.py
@@ -143,8 +143,8 @@ def json_parse(response: str, fields: list):
 
     table_study = {
         "study": {
-            "study_accession": output_data["study_accession"],
-            "center_name": output_data["center_name"],
+            "study_accession": re.sub(r"[!\"#$%&()*\+,\-\'.\/:;<=>?@\[\]^`{|}~]", "",output_data["study_accession"]),
+            "center_name": re.sub(r"[!\"#$%&()*\+,\-\'.\/:;<=>?@\[\]^`{|}~]", "",output_data["center_name"]),
         }
     }