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removed double quotes
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ens-ftricomi committed Apr 12, 2024
1 parent 3231ba7 commit 5bf80d5
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions pipelines/nextflow/modules/omark/omark_output.nf
Original file line number Diff line number Diff line change
Expand Up @@ -30,10 +30,10 @@ process OMARK_OUTPUT {
path("*_proteins_detailed_summary.txt"), emit:summary_file

script:
"""

def summary_name = summary_file
def species = db.species.toLowerCase()
def gca = db.gca.toLowerCase().replaceAll(/\./, "v").replaceAll(/_/, "")
summary_name = [species, gca, "omark", "proteins_detailed_summary.txt"].join("_")
"""

}

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