Add permits for index entries

src/main/java/nl/dtls/fairdatapoint/api/controller/index/IndexEntryController.java

@@ -26,6 +26,7 @@
 import nl.dtls.fairdatapoint.api.dto.index.entry.IndexEntryDTO;
 import nl.dtls.fairdatapoint.api.dto.index.entry.IndexEntryDetailDTO;
 import nl.dtls.fairdatapoint.api.dto.index.entry.IndexEntryInfoDTO;
+import nl.dtls.fairdatapoint.api.dto.index.entry.IndexEntryUpdateDTO;
 import nl.dtls.fairdatapoint.database.rdf.repository.exception.MetadataRepositoryException;
 import nl.dtls.fairdatapoint.service.index.entry.IndexEntryService;
 import org.eclipse.rdf4j.model.Model;
@@ -34,6 +35,7 @@
 import org.springframework.data.domain.Pageable;
 import org.springframework.http.HttpStatus;
 import org.springframework.http.MediaType;
+import org.springframework.security.access.prepost.PreAuthorize;
 import org.springframework.web.bind.annotation.*;
 
 import java.util.List;
@@ -50,16 +52,26 @@ public class IndexEntryController {
     @GetMapping(path = "", produces = MediaType.APPLICATION_JSON_VALUE)
     public Page<IndexEntryDTO> getEntriesPage(
             Pageable pageable,
-            @RequestParam(required = false, defaultValue = "") String state
+            @RequestParam(required = false, defaultValue = "") String state,
+            @RequestParam(required = false, defaultValue = "accepted") String permit
     ) {
-        return service.getEntriesPageDTOs(pageable, state);
+        return service.getEntriesPageDTOs(pageable, state, permit);
     }
 
     @GetMapping(path = "/{uuid}", produces = MediaType.APPLICATION_JSON_VALUE)
     public Optional<IndexEntryDetailDTO> getEntry(@PathVariable final String uuid) {
         return service.getEntryDetailDTO(uuid);
     }
 
+    @PutMapping(path = "/{uuid}", produces = MediaType.APPLICATION_JSON_VALUE)
+    @PreAuthorize("hasRole('ADMIN')")
+    public Optional<IndexEntryDetailDTO> updateEntry(
+            @PathVariable final String uuid,
+            @RequestBody IndexEntryUpdateDTO reqDto
+    ) {
+        return service.updateEntry(uuid, reqDto);
+    }
+
     @GetMapping(path = "/{uuid}/data", produces = "!application/json")
     public Model getEntryData(@PathVariable final String uuid) throws MetadataRepositoryException {
         return service.getEntryHarvestedData(uuid);
@@ -72,12 +84,16 @@ public void deleteEntry(@PathVariable final String uuid) throws MetadataReposito
     }
 
     @GetMapping(path = "/all", produces = MediaType.APPLICATION_JSON_VALUE)
-    public List<IndexEntryDTO> getEntriesAll() {
-        return service.getAllEntriesAsDTOs();
+    public List<IndexEntryDTO> getEntriesAll(
+            @RequestParam(required = false, defaultValue = "accepted") String permit
+    ) {
+        return service.getAllEntriesAsDTOs(permit);
     }
 
     @GetMapping(path = "/info", produces = MediaType.APPLICATION_JSON_VALUE)
-    public IndexEntryInfoDTO getEntriesInfo() {
-        return service.getEntriesInfo();
+    public IndexEntryInfoDTO getEntriesInfo(
+            @RequestParam(required = false, defaultValue = "accepted") String permit
+    ) {
+        return service.getEntriesInfo(permit);
     }
 }

src/main/java/nl/dtls/fairdatapoint/api/dto/index/entry/IndexEntryUpdateDTO.java

@@ -0,0 +1,38 @@
+/**
+ * The MIT License
+ * Copyright © 2017 DTL
+ *
+ * Permission is hereby granted, free of charge, to any person obtaining a copy
+ * of this software and associated documentation files (the "Software"), to deal
+ * in the Software without restriction, including without limitation the rights
+ * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the Software is
+ * furnished to do so, subject to the following conditions:
+ *
+ * The above copyright notice and this permission notice shall be included in
+ * all copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+ * THE SOFTWARE.
+ */
+package nl.dtls.fairdatapoint.api.dto.index.entry;
+
+import lombok.AllArgsConstructor;
+import lombok.Getter;
+import lombok.NoArgsConstructor;
+import lombok.Setter;
+import nl.dtls.fairdatapoint.entity.index.entry.IndexEntryPermit;
+
+@NoArgsConstructor
+@AllArgsConstructor
+@Getter
+@Setter
+public class IndexEntryUpdateDTO {
+
+    private IndexEntryPermit permit;
+}

src/main/java/nl/dtls/fairdatapoint/api/dto/index/settings/IndexSettingsDTO.java

@@ -39,6 +39,9 @@ public class IndexSettingsDTO {
     @NotNull
     private IndexSettingsPingDTO ping;
 
+    @NotNull
+    private Boolean autoPermit;
+
     @NotNull
     private Boolean isDefault;
 }

src/main/java/nl/dtls/fairdatapoint/api/dto/index/settings/IndexSettingsUpdateDTO.java

@@ -41,4 +41,7 @@ public class IndexSettingsUpdateDTO {
     @Valid
     @NotNull
     private IndexSettingsPingDTO ping;
+
+    @NotNull
+    private Boolean autoPermit;
 }

src/main/java/nl/dtls/fairdatapoint/database/mongo/repository/IndexEntryRepository.java

@@ -23,12 +23,14 @@
 package nl.dtls.fairdatapoint.database.mongo.repository;
 
 import nl.dtls.fairdatapoint.entity.index.entry.IndexEntry;
+import nl.dtls.fairdatapoint.entity.index.entry.IndexEntryPermit;
 import nl.dtls.fairdatapoint.entity.index.entry.IndexEntryState;
 import org.springframework.data.domain.Page;
 import org.springframework.data.domain.Pageable;
 import org.springframework.data.mongodb.repository.MongoRepository;
 
 import java.time.Instant;
+import java.util.List;
 import java.util.Optional;
 
 public interface IndexEntryRepository extends MongoRepository<IndexEntry, String> {
@@ -37,18 +39,26 @@ public interface IndexEntryRepository extends MongoRepository<IndexEntry, String
 
     Optional<IndexEntry> findByClientUrl(String clientUrl);
 
-    Page<IndexEntry> findAllByStateEquals(Pageable pageable, IndexEntryState state);
+    Page<IndexEntry> findAllByStateEqualsAndPermitIn(
+            Pageable pageable, IndexEntryState state, List<IndexEntryPermit> permit
+    );
 
-    Page<IndexEntry> findAllByStateEqualsAndLastRetrievalTimeBefore(Pageable pageable, IndexEntryState state,
-                                                                    Instant when);
+    Page<IndexEntry> findAllByStateEqualsAndLastRetrievalTimeBeforeAndPermitIn(
+            Pageable pageable, IndexEntryState state, Instant when, List<IndexEntryPermit> permit
+    );
 
-    Page<IndexEntry> findAllByStateEqualsAndLastRetrievalTimeAfter(Pageable pageable, IndexEntryState state,
-                                                                   Instant when);
+    Page<IndexEntry> findAllByStateEqualsAndLastRetrievalTimeAfterAndPermitIn(
+            Pageable pageable, IndexEntryState state, Instant when, List<IndexEntryPermit> permit
+    );
 
-    long countAllByStateEquals(IndexEntryState state);
+    long countAllByStateEqualsAndPermitIn(IndexEntryState state, List<IndexEntryPermit> permit);
 
-    long countAllByStateEqualsAndLastRetrievalTimeAfter(IndexEntryState state, Instant when);
+    long countAllByStateEqualsAndLastRetrievalTimeAfterAndPermitIn(
+            IndexEntryState state, Instant when, List<IndexEntryPermit> permit);
 
-    long countAllByStateEqualsAndLastRetrievalTimeBefore(IndexEntryState state, Instant when);
+    long countAllByStateEqualsAndLastRetrievalTimeBeforeAndPermitIn(
+            IndexEntryState state, Instant when, List<IndexEntryPermit> permit
+    );
 
+    Iterable<IndexEntry> findAllByPermitIn(List<IndexEntryPermit> permit);
 }

src/main/java/nl/dtls/fairdatapoint/entity/index/entry/IndexEntry.java

@@ -48,6 +48,8 @@ public class IndexEntry {
 
     private IndexEntryState state = IndexEntryState.Unknown;
 
+    private IndexEntryPermit permit = IndexEntryPermit.PENDING;
+
     @DateTimeFormat(iso = DateTimeFormat.ISO.DATE_TIME)
     private Instant registrationTime;
 

src/main/java/nl/dtls/fairdatapoint/entity/index/entry/IndexEntryPermit.java

@@ -0,0 +1,29 @@
+/**
+ * The MIT License
+ * Copyright © 2017 DTL
+ *
+ * Permission is hereby granted, free of charge, to any person obtaining a copy
+ * of this software and associated documentation files (the "Software"), to deal
+ * in the Software without restriction, including without limitation the rights
+ * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the Software is
+ * furnished to do so, subject to the following conditions:
+ *
+ * The above copyright notice and this permission notice shall be included in
+ * all copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+ * THE SOFTWARE.
+ */
+package nl.dtls.fairdatapoint.entity.index.entry;
+
+public enum IndexEntryPermit {
+    PENDING,
+    ACCEPTED,
+    REJECTED,
+}

src/main/java/nl/dtls/fairdatapoint/entity/index/settings/IndexSettings.java

@@ -46,10 +46,14 @@ public class IndexSettings {
     @NotNull
     private IndexSettingsPing ping;
 
+    @NotNull
+    private Boolean autoPermit;
+
     public static IndexSettings getDefault() {
         final IndexSettings settings = new IndexSettings();
         settings.setPing(IndexSettingsPing.getDefault());
         settings.setRetrieval(IndexSettingsRetrieval.getDefault());
+        settings.setAutoPermit(true);
         return settings;
     }
 

src/main/java/nl/dtls/fairdatapoint/entity/user/User.java

@@ -61,4 +61,8 @@ public User(
         this.passwordHash = passwordHash;
         this.role = role;
     }
+
+    public boolean isAdmin() {
+        return role.equals(UserRole.ADMIN);
+    }
 }