Add permits for index entries

src/main/java/nl/dtls/fairdatapoint/api/controller/index/IndexAdminController.java

@@ -31,8 +31,8 @@
 import nl.dtls.fairdatapoint.database.rdf.repository.exception.MetadataRepositoryException;
 import nl.dtls.fairdatapoint.entity.index.event.Event;
 import nl.dtls.fairdatapoint.service.UtilityService;
+import nl.dtls.fairdatapoint.service.index.entry.IndexEntryService;
 import nl.dtls.fairdatapoint.service.index.event.EventService;
-import nl.dtls.fairdatapoint.service.index.harvester.HarvesterService;
 import nl.dtls.fairdatapoint.service.index.webhook.WebhookService;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.http.HttpStatus;
@@ -57,7 +57,7 @@ public class IndexAdminController {
     private WebhookService webhookService;
 
     @Autowired
-    private HarvesterService harvesterService;
+    private IndexEntryService indexEntryService;
 
     @Operation(hidden = true)
     @PostMapping("/trigger")
@@ -72,7 +72,7 @@ public void triggerMetadataRetrieve(
         final Event event = eventService.acceptAdminTrigger(request, reqDto);
         webhookService.triggerWebhooks(event);
         eventService.triggerMetadataRetrieval(event);
-        harvesterService.harvest(reqDto.getClientUrl());
+        indexEntryService.harvest(reqDto.getClientUrl());
     }
 
     @Operation(hidden = true)

src/main/java/nl/dtls/fairdatapoint/api/controller/index/IndexEntryController.java

@@ -23,17 +23,26 @@
 package nl.dtls.fairdatapoint.api.controller.index;
 
 import io.swagger.v3.oas.annotations.tags.Tag;
+import jakarta.servlet.http.HttpServletRequest;
 import nl.dtls.fairdatapoint.api.dto.index.entry.IndexEntryDTO;
 import nl.dtls.fairdatapoint.api.dto.index.entry.IndexEntryDetailDTO;
 import nl.dtls.fairdatapoint.api.dto.index.entry.IndexEntryInfoDTO;
+import nl.dtls.fairdatapoint.api.dto.index.entry.IndexEntryUpdateDTO;
+import nl.dtls.fairdatapoint.api.dto.index.ping.PingDTO;
 import nl.dtls.fairdatapoint.database.rdf.repository.exception.MetadataRepositoryException;
+import nl.dtls.fairdatapoint.entity.index.entry.IndexEntryPermit;
+import nl.dtls.fairdatapoint.entity.index.event.Event;
 import nl.dtls.fairdatapoint.service.index.entry.IndexEntryService;
+import nl.dtls.fairdatapoint.service.index.event.EventService;
+import nl.dtls.fairdatapoint.service.index.harvester.HarvesterService;
+import nl.dtls.fairdatapoint.service.index.webhook.WebhookService;
 import org.eclipse.rdf4j.model.Model;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.data.domain.Page;
 import org.springframework.data.domain.Pageable;
 import org.springframework.http.HttpStatus;
 import org.springframework.http.MediaType;
+import org.springframework.security.access.prepost.PreAuthorize;
 import org.springframework.web.bind.annotation.*;
 
 import java.util.List;
@@ -47,19 +56,55 @@ public class IndexEntryController {
     @Autowired
     private IndexEntryService service;
 
+    @Autowired
+    private HarvesterService harvesterService;
+
+    @Autowired
+    private EventService eventService;
+
+    @Autowired
+    private WebhookService webhookService;
+
+    @Autowired
+    private IndexEntryService indexEntryService;
+
     @GetMapping(path = "", produces = MediaType.APPLICATION_JSON_VALUE)
     public Page<IndexEntryDTO> getEntriesPage(
             Pageable pageable,
-            @RequestParam(required = false, defaultValue = "") String state
+            @RequestParam(required = false, defaultValue = "") String state,
+            @RequestParam(required = false, defaultValue = "accepted") String permit
     ) {
-        return service.getEntriesPageDTOs(pageable, state);
+        return service.getEntriesPageDTOs(pageable, state, permit);
     }
 
     @GetMapping(path = "/{uuid}", produces = MediaType.APPLICATION_JSON_VALUE)
     public Optional<IndexEntryDetailDTO> getEntry(@PathVariable final String uuid) {
         return service.getEntryDetailDTO(uuid);
     }
 
+    @PutMapping(path = "/{uuid}", produces = MediaType.APPLICATION_JSON_VALUE)
+    @PreAuthorize("hasRole('ADMIN')")
+    public Optional<IndexEntryDetailDTO> updateEntry(
+            @PathVariable final String uuid,
+            @RequestBody IndexEntryUpdateDTO reqDto,
+            HttpServletRequest request
+    ) throws MetadataRepositoryException {
+        final Optional<IndexEntryDetailDTO> resDto = service.updateEntry(uuid, reqDto);
+        if (resDto.isPresent()) {
+            final String clientUrl = resDto.get().getClientUrl();
+            if (resDto.get().getPermit().equals(IndexEntryPermit.ACCEPTED)) {
+                final Event event = eventService.acceptAdminTrigger(request, new PingDTO(clientUrl));
+                webhookService.triggerWebhooks(event);
+                eventService.triggerMetadataRetrieval(event);
+                indexEntryService.harvest(clientUrl);
+            }
+            else {
+                harvesterService.deleteHarvestedData(clientUrl);
+            }
+        }
+        return resDto;
+    }
+
     @GetMapping(path = "/{uuid}/data", produces = "!application/json")
     public Model getEntryData(@PathVariable final String uuid) throws MetadataRepositoryException {
         return service.getEntryHarvestedData(uuid);
@@ -72,12 +117,16 @@ public void deleteEntry(@PathVariable final String uuid) throws MetadataReposito
     }
 
     @GetMapping(path = "/all", produces = MediaType.APPLICATION_JSON_VALUE)
-    public List<IndexEntryDTO> getEntriesAll() {
-        return service.getAllEntriesAsDTOs();
+    public List<IndexEntryDTO> getEntriesAll(
+            @RequestParam(required = false, defaultValue = "accepted") String permit
+    ) {
+        return service.getAllEntriesAsDTOs(permit);
     }
 
     @GetMapping(path = "/info", produces = MediaType.APPLICATION_JSON_VALUE)
-    public IndexEntryInfoDTO getEntriesInfo() {
-        return service.getEntriesInfo();
+    public IndexEntryInfoDTO getEntriesInfo(
+            @RequestParam(required = false, defaultValue = "accepted") String permit
+    ) {
+        return service.getEntriesInfo(permit);
     }
 }

src/main/java/nl/dtls/fairdatapoint/api/controller/index/IndexPingController.java

@@ -35,8 +35,8 @@
 import nl.dtls.fairdatapoint.database.rdf.repository.exception.MetadataRepositoryException;
 import nl.dtls.fairdatapoint.entity.index.event.Event;
 import nl.dtls.fairdatapoint.service.UtilityService;
+import nl.dtls.fairdatapoint.service.index.entry.IndexEntryService;
 import nl.dtls.fairdatapoint.service.index.event.EventService;
-import nl.dtls.fairdatapoint.service.index.harvester.HarvesterService;
 import nl.dtls.fairdatapoint.service.index.webhook.WebhookService;
 import org.springframework.beans.factory.annotation.Autowired;
 import org.springframework.http.HttpStatus;
@@ -57,7 +57,7 @@ public class IndexPingController {
     private WebhookService webhookService;
 
     @Autowired
-    private HarvesterService harvesterService;
+    private IndexEntryService indexEntryService;
 
     @Autowired
     private UtilityService utilityService;
@@ -100,7 +100,7 @@ public ResponseEntity<Void> receivePing(
         final Event event = eventService.acceptIncomingPing(reqDto, request);
         log.info("Triggering metadata retrieval for {}", event.getRelatedTo().getClientUrl());
         eventService.triggerMetadataRetrieval(event);
-        harvesterService.harvest(reqDto.getClientUrl());
+        indexEntryService.harvest(reqDto.getClientUrl());
         webhookService.triggerWebhooks(event);
         return new ResponseEntity<>(HttpStatus.NO_CONTENT);
     }

src/main/java/nl/dtls/fairdatapoint/api/dto/index/entry/IndexEntryDTO.java

@@ -27,6 +27,7 @@
 import lombok.Getter;
 import lombok.NoArgsConstructor;
 import lombok.Setter;
+import nl.dtls.fairdatapoint.entity.index.entry.IndexEntryPermit;
 import org.hibernate.validator.constraints.URL;
 
 @NoArgsConstructor
@@ -45,6 +46,9 @@ public class IndexEntryDTO {
     @NotNull
     private IndexEntryStateDTO state;
 
+    @NotNull
+    private IndexEntryPermit permit;
+
     @NotNull
     private String registrationTime;
 

src/main/java/nl/dtls/fairdatapoint/api/dto/index/entry/IndexEntryDetailDTO.java

@@ -28,6 +28,7 @@
 import lombok.NoArgsConstructor;
 import lombok.Setter;
 import nl.dtls.fairdatapoint.api.dto.index.event.EventDTO;
+import nl.dtls.fairdatapoint.entity.index.entry.IndexEntryPermit;
 import nl.dtls.fairdatapoint.entity.index.entry.RepositoryMetadata;
 import org.hibernate.validator.constraints.URL;
 
@@ -49,6 +50,9 @@ public class IndexEntryDetailDTO {
     @NotNull
     private IndexEntryStateDTO state;
 
+    @NotNull
+    private IndexEntryPermit permit;
+
     @NotNull
     private RepositoryMetadata currentMetadata;
 

src/main/java/nl/dtls/fairdatapoint/api/dto/index/entry/IndexEntryUpdateDTO.java

@@ -0,0 +1,38 @@
+/**
+ * The MIT License
+ * Copyright © 2017 DTL
+ *
+ * Permission is hereby granted, free of charge, to any person obtaining a copy
+ * of this software and associated documentation files (the "Software"), to deal
+ * in the Software without restriction, including without limitation the rights
+ * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+ * copies of the Software, and to permit persons to whom the Software is
+ * furnished to do so, subject to the following conditions:
+ *
+ * The above copyright notice and this permission notice shall be included in
+ * all copies or substantial portions of the Software.
+ *
+ * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+ * THE SOFTWARE.
+ */
+package nl.dtls.fairdatapoint.api.dto.index.entry;
+
+import lombok.AllArgsConstructor;
+import lombok.Getter;
+import lombok.NoArgsConstructor;
+import lombok.Setter;
+import nl.dtls.fairdatapoint.entity.index.entry.IndexEntryPermit;
+
+@NoArgsConstructor
+@AllArgsConstructor
+@Getter
+@Setter
+public class IndexEntryUpdateDTO {
+
+    private IndexEntryPermit permit;
+}

src/main/java/nl/dtls/fairdatapoint/api/dto/index/settings/IndexSettingsDTO.java

@@ -39,6 +39,9 @@ public class IndexSettingsDTO {
     @NotNull
     private IndexSettingsPingDTO ping;
 
+    @NotNull
+    private Boolean autoPermit;
+
     @NotNull
     private Boolean isDefault;
 }

src/main/java/nl/dtls/fairdatapoint/api/dto/index/settings/IndexSettingsUpdateDTO.java

@@ -41,4 +41,7 @@ public class IndexSettingsUpdateDTO {
     @Valid
     @NotNull
     private IndexSettingsPingDTO ping;
+
+    @NotNull
+    private Boolean autoPermit;
 }

src/main/java/nl/dtls/fairdatapoint/config/properties/InstanceProperties.java

@@ -38,6 +38,7 @@ public class InstanceProperties {
     private boolean behindProxy = true;
     private String persistentUrl;
     private boolean index;
+    private boolean indexAutoPermit;
 
     private String title = "FAIR Data Point";
     private String subtitle = "Metadata for machines";