Update from upstream 2023-11-29 #237
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* intel-xed: fix git hash for mbuild, add version 2023.10.11 Fixes spack#40912 * Fix the git commit hash for mbuild 2022.04.17. This was broken in commit eef9939 by mixing up the hashes for xed versus mbuild. * Add versions 2023.08.21 and 2023.10.11. * fix style
* exago: fix v1.5.1 tag; only allow python up to 3.10 for for @:1.5 (spack#40676) * exago: fix v1.5.1 tag; only allow python up to 3.10 for for @:1.5 due to pybind error with py 3.11 * hiop@:1.0 +cuda: constrain to cuda@:11.9 * fixes syntax of maintainers --------- Co-authored-by: eugeneswalker <[email protected]>
* mapl: add 2.41 and 2.42 * Conflict MPICH 3
* julia: constrain patchelf version [email protected] breaks (at least) `libjulea-internal.so`, leading to errors like: ``` $ julia --version ERROR: Unable to load dependent library $SPACK/opt/spack/linux-centos8-x86_64_v3/gcc-12.3.0/julia-1.9.2-6hf5qx2q27jth2fkm6kgqmfdlhzzw6pl/bin/../lib/julia/libjulia-internal.so.1 Message:$SPACK/opt/spack/linux-centos8-x86_64_v3/gcc-12.3.0/julia-1.9.2-6hf5qx2q27jth2fkm6kgqmfdlhzzw6pl/bin/../lib/julia/libjulia-internal.so.1: ELF load command address/offset not properly aligned ``` * patchelf: prefer v0.17.x since v0.18 breaks libraries
* abinit: add v9.10.3 Changed configure arguments for specfying how to use Wannier90 for versions after 9.8. When the mpi variant is requested, set the F90 environment variable to point to the MPI Fortran wrapper when building versions after 9.8 instead of FC. --------- Co-authored-by: Alec Scott <[email protected]>
* lcov: add version2, perl dep at build and runtime * lcov: add runtime deps * namespace-autoclean: new perl package * datetime: dep on autoclean * formatting
The libevent release tarballs ship with a `configure` script generated by an old `libtool`. The `libtool` generated by `configure` is not compatible with `MACOSX_DEPLOYMENT_VERSION` > 10. Regeneration of the `configure` scripts fixes build on macOS.
Original configure contains:
```
case $host_os in
rhapsody* | darwin1.[012])
_lt_dar_allow_undefined='$wl-undefined ${wl}suppress' ;;
darwin1.*)
_lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;;
darwin*) # darwin 5.x on
# if running on 10.5 or later, the deployment target defaults
# to the OS version, if on x86, and 10.4, the deployment
# target defaults to 10.4. Don't you love it?
case ${MACOSX_DEPLOYMENT_TARGET-10.0},$host in
10.0,*86*-darwin8*|10.0,*-darwin[91]*)
_lt_dar_allow_undefined='$wl-undefined ${wl}dynamic_lookup' ;;
10.[012][,.]*)
_lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;;
10.*)
_lt_dar_allow_undefined='$wl-undefined ${wl}dynamic_lookup' ;;
esac
```
After re-running `autogen.sh`:
```
case $host_os in
rhapsody* | darwin1.[012])
_lt_dar_allow_undefined='$wl-undefined ${wl}suppress' ;;
darwin1.*)
_lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;;
darwin*)
case $MACOSX_DEPLOYMENT_TARGET,$host in
10.[012],*|,*powerpc*-darwin[5-8]*)
_lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;;
*)
_lt_dar_allow_undefined='$wl-undefined ${wl}dynamic_lookup' ;;
esac
```
* podio: Add myself as maintainer * podio: Add 0.17.2 tag
Libgit2 requires python as build dependency. I was getting an error because it was falling back to system Python which is compiled with Intel compilers and thus, `libgit2` was failing because it couldn't find `libimf.so` (which doesn't make sense). Co-authored-by: Harmen Stoppels <[email protected]>
This removes a few deprecated attributes from the schema of the "modules" section. Test data for deprecated options is removed as well.
…40947) This triggers warnings from icx compiler - that breaks petsc configure $ I_MPI_CC=icx /opt/intel/oneapi/mpi/2021.7.0/bin/mpiicc -E a.c > /dev/null $ __INTEL_POST_CFLAGS=-Wl,-rpath,/opt/intel/oneapi/mkl/2022.2.0/lib/intel64 I_MPI_CC=icx /opt/intel/oneapi/mpi/2021.7.0/bin/mpiicc -E a.c > /dev/null icx: warning: -Wl,-rpath,/opt/intel/oneapi/mkl/2022.2.0/lib/intel64: 'linker' input unused [-Wunused-command-line-argument]
This commit improves forward compatibility of Spack with newer build cache metadata formats. Before this commit, invalid or unrecognized metadata would be fatal errors, now they just cause a mirror to be skipped. Co-authored-by: Harmen Stoppels <[email protected]>
) * [lcov] Add build and runtime deps necessary for [email protected]: + Many additional Perl package dependecies are required for the new version of lcov. + Some of the new dependencies were not known to spack until now. * Style fix
* qt-*: new versions 6.6.1 * qt-quick3d: fixup
Co-authored-by: Tom Scogland <[email protected]> Co-authored-by: Wouter Deconinck <[email protected]> Co-authored-by: Massimiliano Culpo <[email protected]>
…yle (spack#41285) Bumps [vermin](https://github.com/netromdk/vermin) from 1.5.2 to 1.6.0. - [Release notes](https://github.com/netromdk/vermin/releases) - [Commits](netromdk/vermin@v1.5.2...v1.6.0) --- updated-dependencies: - dependency-name: vermin dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Setting CFLAGS/FCFLAGS overrides the default optimization flags. This commit brings them back.
* root: add a webgui patch * Update var/spack/repos/builtin/packages/root/package.py Co-authored-by: Massimiliano Culpo <[email protected]> * Add also the versions that don't need the webgui patch * Fix hash --------- Co-authored-by: jmcarcell <[email protected]> Co-authored-by: Massimiliano Culpo <[email protected]>
* solver: use a unique counter for condition, triggers and effects * Do not reset counters when re-running setup What we need is just a unique ID, it doesn't need to start from zero every time.
The changes in patch xdmf2-hdf51.13.2.patch have effectively been added to [email protected] (commit e81a2fe) So restrict application of patch fo @9:9.2
* apple-libuuid: update installation directory Copy design of Apple GL
* Initial commit to fix hip tests and bump hip-examples to 5.6.1 * fix styling * add installation of hip samples to share folder
…40135) * initial commit to update hipblas rocalution, rocsolver, rocsparse to new syntax * add rocblas test changes and fixes for hipblas and rocsolver tests * fix styling * remove updates for rocblas
|
Blocked by #236 |
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marcmengel
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Nov 29, 2023
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patchon Windows spack/spack#40513)+python(exago: fix exago missing on PYTHONPATH when+pythonspack/spack#40748)MACHTYPEwhich is not always defined (Fix an issue with using the environment variableMACHTYPEwhich is not always defined spack/spack#40733)license()docs with examples and links (docs: updatelicense()docs with examples and links spack/spack#40598)SetupContext.get_env_modificationsfixes and documentation (SetupContext.get_env_modificationsfixes and documentation spack/spack#40683)default_argscontext manager (Introducedefault_argscontext manager spack/spack#39964)whichintroduced in #37762 spack/spack#40935)lz4dependency spack/spack#40925)+:and-:operators (docs: tweak formatting of+:and-:operators spack/spack#40988)spack infocommand to display variants better spack/spack#40998)spack deconcretizecommand (spack deconcretizecommand spack/spack#38803)~ownlibson Windows (CMake Package: support building~ownlibson Win spack/spack#38758)@developspack/spack#41067)[email protected]:3.4.4since failing to install using clang@15 spack/spack#41083)when=arguments using wrong named specs (Add audit check to spotwhen=arguments using wrong named specs spack/spack#41107)