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Merge pull request #59 from FlyBase/release_2022-01-24
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release files 2022-01-24
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@Clare72
Clare72 authored Jan 24, 2022
2 parents 0181a49 + fd0fc41 commit 3c17db5
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Showing 30 changed files with 1,982 additions and 679 deletions.
6 changes: 3 additions & 3 deletions fbdv-base.json
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Expand Up @@ -3218,7 +3218,7 @@
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#date",
"val": "06:12:2021 09:25"
"val": "24:01:2022 09:24"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#default-namespace",
Expand All @@ -3230,11 +3230,11 @@
},
{
"pred": "http://www.w3.org/2002/07/owl#versionInfo",
"val": "2021-12-06"
"val": "2022-01-24"
}
],
"subsets": [],
"version": "http://purl.obolibrary.org/obo/fbdv/releases/2021-12-06/fbdv-base.json",
"version": "http://purl.obolibrary.org/obo/fbdv/releases/2022-01-24/fbdv-base.json",
"xrefs": []
},
"nodes": [
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6 changes: 3 additions & 3 deletions fbdv-base.obo
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@@ -1,6 +1,6 @@
format-version: 1.2
data-version: fbdv/releases/2021-12-06/fbdv-base.owl
date: 06:12:2021 09:25
data-version: fbdv/releases/2022-01-24/fbdv-base.owl
date: 24:01:2022 09:24
subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation"
subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation"
subsetdef: goslim_aspergillus "Aspergillus GO slim"
Expand Down Expand Up @@ -30,7 +30,7 @@ property_value: IAO:0000700 FBdv:00000000
property_value: IAO:0000700 FBdv:00005259
property_value: IAO:0000700 FBdv:00007013
property_value: IAO:0000700 FBdv:00007024
property_value: owl:versionInfo "2021-12-06" xsd:string
property_value: owl:versionInfo "2022-01-24" xsd:string

[Term]
id: FBdv:00000000
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6 changes: 3 additions & 3 deletions fbdv-base.owl
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Expand Up @@ -12,7 +12,7 @@
xmlns:terms="http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/fbdv/fbdv-base.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fbdv/releases/2021-12-06/fbdv-base.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fbdv/releases/2022-01-24/fbdv-base.owl"/>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBdv_00000000"/>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBdv_00005259"/>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/FBdv_00007013"/>
Expand All @@ -26,10 +26,10 @@
<dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
<terms:license rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://creativecommons.org/licenses/by/3.0/</terms:license>
<oboInOwl:NamespaceIdRule rdf:datatype="http://www.w3.org/2001/XMLSchema#string">* FBdv:$sequence(8,7000,10000)$</oboInOwl:NamespaceIdRule>
<oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">06:12:2021 09:25</oboInOwl:date>
<oboInOwl:date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">24:01:2022 09:24</oboInOwl:date>
<oboInOwl:default-namespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">FlyBase_development_CV</oboInOwl:default-namespace>
<oboInOwl:hasOBOFormatVersion rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1.2</oboInOwl:hasOBOFormatVersion>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2021-12-06</owl:versionInfo>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2022-01-24</owl:versionInfo>
</owl:Ontology>


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180 changes: 170 additions & 10 deletions fbdv-full.json
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Expand Up @@ -220,6 +220,15 @@
"http://purl.obolibrary.org/obo/BFO_0000015"
]
},
{
"domainClassIds": [
"http://purl.obolibrary.org/obo/BFO_0000015"
],
"predicateId": "http://purl.obolibrary.org/obo/RO_0019000",
"rangeClassIds": [
"http://purl.obolibrary.org/obo/PATO_0000001"
]
},
{
"domainClassIds": [
"http://purl.obolibrary.org/obo/BFO_0000040"
Expand Down Expand Up @@ -386,6 +395,11 @@
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/BFO_0000019"
},
{
"obj": "http://purl.obolibrary.org/obo/BFO_0000020",
"pred": "is_a",
"sub": "http://purl.obolibrary.org/obo/PATO_0000001"
},
{
"obj": "http://purl.obolibrary.org/obo/BFO_0000050",
"pred": "subPropertyOf",
Expand Down Expand Up @@ -4251,6 +4265,11 @@
"pred": "subPropertyOf",
"sub": "http://purl.obolibrary.org/obo/RO_0002608"
},
{
"obj": "http://purl.obolibrary.org/obo/RO_0002410",
"pred": "subPropertyOf",
"sub": "http://purl.obolibrary.org/obo/RO_0019000"
},
{
"obj": "http://purl.obolibrary.org/obo/RO_0002411",
"pred": "inverseOf",
Expand Down Expand Up @@ -4510,6 +4529,16 @@
"obj": "http://purl.obolibrary.org/obo/RO_0011002",
"pred": "subPropertyOf",
"sub": "http://purl.obolibrary.org/obo/RO_0002448"
},
{
"obj": "http://purl.obolibrary.org/obo/RO_0019000",
"pred": "subPropertyOf",
"sub": "http://purl.obolibrary.org/obo/RO_0019001"
},
{
"obj": "http://purl.obolibrary.org/obo/RO_0019000",
"pred": "subPropertyOf",
"sub": "http://purl.obolibrary.org/obo/RO_0019002"
}
],
"equivalentNodesSets": [],
Expand Down Expand Up @@ -4676,7 +4705,7 @@
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#date",
"val": "06:12:2021 09:24"
"val": "24:01:2022 09:23"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#default-namespace",
Expand All @@ -4688,11 +4717,11 @@
},
{
"pred": "http://www.w3.org/2002/07/owl#versionInfo",
"val": "2021-12-06"
"val": "2022-01-24"
}
],
"subsets": [],
"version": "http://purl.obolibrary.org/obo/fbdv/releases/2021-12-06/fbdv-full.json",
"version": "http://purl.obolibrary.org/obo/fbdv/releases/2022-01-24/fbdv-full.json",
"xrefs": []
},
"nodes": [
Expand Down Expand Up @@ -10660,7 +10689,6 @@
"http://purl.obolibrary.org/obo/go#goslim_aspergillus",
"http://purl.obolibrary.org/obo/go#goslim_candida",
"http://purl.obolibrary.org/obo/go#goslim_chembl",
"http://purl.obolibrary.org/obo/go#goslim_generic",
"http://purl.obolibrary.org/obo/go#goslim_metagenomics",
"http://purl.obolibrary.org/obo/go#goslim_pir",
"http://purl.obolibrary.org/obo/go#goslim_plant",
Expand Down Expand Up @@ -11416,6 +11444,19 @@
},
"type": "PROPERTY"
},
{
"id": "http://purl.obolibrary.org/obo/PATO_0000001",
"lbl": "quality",
"meta": {
"basicPropertyValues": [
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000589",
"val": "quality (PATO)"
}
]
},
"type": "CLASS"
},
{
"id": "http://purl.obolibrary.org/obo/RO_0000052",
"lbl": "characteristic of",
Expand Down Expand Up @@ -11768,7 +11809,7 @@
},
{
"id": "http://purl.obolibrary.org/obo/RO_0002012",
"lbl": "occurent part of",
"lbl": "occurent_part_of",
"meta": {
"basicPropertyValues": [
{
Expand All @@ -11781,7 +11822,7 @@
}
],
"definition": {
"val": "A part of relation that applies only between occurents.",
"val": "A part of relation that applies only between occurrents.",
"xrefs": []
},
"xrefs": [
Expand Down Expand Up @@ -12956,10 +12997,6 @@
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000232",
"val": "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized."
},
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000232",
"val": "This relation is currently used experimentally by the Gene Ontology Consortium. It may not be stable and may be obsoleted at some future time."
}
],
"subsets": [
Expand Down Expand Up @@ -14310,6 +14347,94 @@
},
"type": "PROPERTY"
},
{
"id": "http://purl.obolibrary.org/obo/RO_0017001",
"lbl": "utilizes",
"meta": {
"basicPropertyValues": [
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000112",
"val": "A diagnostic testing device utilizes a specimen."
},
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000117",
"val": "Asiyah Lin"
},
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000117",
"val": "https://orcid.org/0000-0001-9625-1899 Bill Duncan"
},
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000232",
"val": "A diagnostic testing device utilizes a specimen means that the diagnostic testing device is capable of an assay, and this assay a specimen as its input."
},
{
"pred": "http://purl.obolibrary.org/obo/IAO_0000232",
"val": "See github ticket https://github.com/oborel/obo-relations/issues/497"
},
{
"pred": "http://www.geneontology.org/formats/oboInOwl#creation_date",
"val": "2021-11-08"
}
],
"definition": {
"val": "X utilizes Y means X and Y are material entities, and X is capable of some process P that has input Y.",
"xrefs": []
}
},
"type": "PROPERTY"
},
{
"id": "http://purl.obolibrary.org/obo/RO_0019000",
"lbl": "regulates characteristic",
"meta": {
"basicPropertyValues": [
{
"pred": "http://purl.org/dc/terms/contributor",
"val": "https://orcid.org/0000-0002-8688-6599"
}
],
"definition": {
"val": "A relationship that holds between a process and a characteristic in which process (P) regulates characteristic (C) iff: P results in the existence of C OR affects the intensity or magnitude of C.",
"xrefs": []
}
},
"type": "PROPERTY"
},
{
"id": "http://purl.obolibrary.org/obo/RO_0019001",
"lbl": "positively regulates characteristic",
"meta": {
"basicPropertyValues": [
{
"pred": "http://purl.org/dc/terms/contributor",
"val": "https://orcid.org/0000-0002-8688-6599"
}
],
"definition": {
"val": "A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.",
"xrefs": []
}
},
"type": "PROPERTY"
},
{
"id": "http://purl.obolibrary.org/obo/RO_0019002",
"lbl": "negatively regulates characteristic",
"meta": {
"basicPropertyValues": [
{
"pred": "http://purl.org/dc/terms/contributor",
"val": "https://orcid.org/0000-0002-8688-6599"
}
],
"definition": {
"val": "A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.",
"xrefs": []
}
},
"type": "PROPERTY"
},
{
"id": "http://purl.obolibrary.org/obo/fbdv#systematic_synonym",
"lbl": "Systematic synonym",
Expand Down Expand Up @@ -14712,6 +14837,13 @@
],
"predicateId": "http://purl.obolibrary.org/obo/RO_0002428"
},
{
"chainPredicateIds": [
"http://purl.obolibrary.org/obo/RO_0002211",
"http://purl.obolibrary.org/obo/RO_0019000"
],
"predicateId": "http://purl.obolibrary.org/obo/RO_0019000"
},
{
"chainPredicateIds": [
"http://purl.obolibrary.org/obo/RO_0002212",
Expand Down Expand Up @@ -14740,6 +14872,13 @@
],
"predicateId": "http://purl.obolibrary.org/obo/RO_0002430"
},
{
"chainPredicateIds": [
"http://purl.obolibrary.org/obo/RO_0002212",
"http://purl.obolibrary.org/obo/RO_0019001"
],
"predicateId": "http://purl.obolibrary.org/obo/RO_0019002"
},
{
"chainPredicateIds": [
"http://purl.obolibrary.org/obo/RO_0002213",
Expand All @@ -14761,6 +14900,27 @@
],
"predicateId": "http://purl.obolibrary.org/obo/RO_0002429"
},
{
"chainPredicateIds": [
"http://purl.obolibrary.org/obo/RO_0002213",
"http://purl.obolibrary.org/obo/RO_0019001"
],
"predicateId": "http://purl.obolibrary.org/obo/RO_0019001"
},
{
"chainPredicateIds": [
"http://purl.obolibrary.org/obo/RO_0002213",
"http://purl.obolibrary.org/obo/RO_0019002"
],
"predicateId": "http://purl.obolibrary.org/obo/RO_0019002"
},
{
"chainPredicateIds": [
"http://purl.obolibrary.org/obo/RO_0002215",
"http://purl.obolibrary.org/obo/RO_0002233"
],
"predicateId": "http://purl.obolibrary.org/obo/RO_0017001"
},
{
"chainPredicateIds": [
"http://purl.obolibrary.org/obo/RO_0002233",
Expand Down
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